Gene detail

Detailed information of XP_065065057.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_4:5121879...5144742
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135691195

ATGGCAGTGGATTATTTTTGGAGAGCGGACGATTATCATTCATACCATAAAACTGAAAGATTCACTTTACTTGTTTTGGCACCAGGGGAAATATATTTTGAAGACTTTAGTGTCTTTTATTACCCAATTGAGAAGTCAGAAGATGAGGCATTTAAAAGGAAGCAAAAAGGAAGACTGAAATTATGTTCAAAGTCACTGGTCTTTGATCCTATTGATAGTTCATATCCAATGCTCAAGCTTCAGTACAAAGATTTGGTCAGTATAGGAAAATGGGATGGATCATTGCTGTCAAGGCTTGCCAGTCAAGGGGATATTCTGATGGTAGAGACAAAACAGTGTATTCAGATGAAAGAGTCAGGGCTTTTGGGACCATACAAGCATATAAGGGAGAAGAAAAAGCATTTGTTTTCTTTGAATTTTGGGAGTCTGTCTACTACATTACCACTGATTGAGCAGCTTCACAGAGCATCTACATTGAATCCACACGATGAAGCCTCAATGATTGCAACAATAGTCCAATCAATTCAAGCAAGAACAGCATTTAATACAAGTTGGATCGAAGACCTTTATGAGAAGATCATACTTGAAGTAACAGGGGAGAAGATAACACCTCTTGTCTGCAATCCTGGAAAAGTTCTTCTTACATCATCAAGACTTTATTTTCAACCATTTAATAACGTTGAGCCGTTACCAGTTATCAAAGTAAAATTGTCTGATGTAAGCAAAGTCATAAAAAGAAGATATTTGCTGAGACATGTGGGTTTGGAGATATCTTCGTCAACATCAAATCGTCCTTTATATCTTGTTTTTGAATCTGAAGAAATTAGAAATTCTGTTTACAATCGATTGCTTGAGCAAGAAGATCTCTCATTGGAGGAATCAGAGCAAGAAAACATGTTGCTGAAATGGCAGGCGGGCGCCATTTCGAATTTCGACTATCTAATGTATCTAAACAGCCAAGCTGATCGAAGTTTGAATGACATAACACAGTATCCTGTCTTCCCATGGGTGATTCGTGATTATGAGAGCGATCATCTAGACTTGGAAGATCCTAAAACGTTTAGAGATTTATCAATACCAATTGGAGCGATTGACAAGTCCCGCTTGCAGCAACTAAAGGTCCGCAGCAAATCAATGCCAGAACCGAAGTTTCTGTACGGATCTCATTATTCCACGCCTGGTTTTGTTTTATATTACTTGGTACGAGTCGCACCTGAGTACATGCTTTGTCTGCAAAATGGAAGGTTCGATAAAGCAGATCGCCTCTTTAACAGTATTAAATCTTGTTGGGATAATTGCTGTACAGGGCATTCAGACTTCAAAGAGTTGATTCCAGAATTTTATTCCTCTGATGGGAAATTTTTGCAAAATAGAATGAATTTACAGCTTGGAACAAGACAAGATGGAGTACGAGTGCATCATGTGGCTTTGCCTCCTTGGGCTAATGACGCCAAAGATTATATACAAAAATCCCGAGATGCATTGGAATGCTCATATGTCTCAGAGAATATCCATCACTGGATTGACTTGATTTTCGGTTACAAACAACGTGGCGAAGAGGCATGGAAGGCGGACAATGTCTTCTACTACCTGACATATGAAGGTGCCGTTGATCTTGACACCATCACCAACCCTAACGAGCAAGAGTCTTTAAAGCAACAAATTCTAGAATTCGGACAAACACCAAAACAGTTATTTATGCATCCACATCCGCATCGTAAGGCACAGAACATACCACACCCGATACCACTAGAAAGTTTACTTGATACTGATGAACTGGCTCATCATGGATTAAATGAGGAGGATATTCCAGTCATAGAAGTGAAATTGGAAGATATTGATTCATCACAGAATCTGGATGAGAAGAAACCTTTGGAAGATTTGTGCAATCTGAAGCTTGTCCGTACAATGAAAAGTCACAAAGATGCGGTTTTAGGTCTTAGTATCTCCGAAAAAGAAGACAATATTTTTTCAGTCTCTCTAGATTCACAACTGAAAATGAACAGTTTGGAAGACGGTACTCAGATTCGGGGGATGAATTTATCAAGCATGGCACTGTCTTGTTGTGTGCTAATGCCAAACTCAGATTTAGTGCTGGTTGGCTCTTGGGACAATAATCTATACGTTTACTCAGTGGACTTTGGAAGGGCAATATTTGAGAGTAATATTCATAATGATGCAGTATCTTCAATGTGTTGGAAGAACAATATTTTGGTGACAGCTTCGTGGGATTCAACTGTTAAGGTATGGTTCTTCGATCCCAAGCAATTCTCGAAAAAGCGTGGTCCTCCAGAACTGCAGGGAGAGCTTGACCATGATACAGAGGTTACAGCTGTTGACTTGCATGTAGATGGCGATGAGAAATTGATTGTATCTGGAACCAAAGATGGGCATATTTTTCTCTGGAATCTTGATTCTATGGTCCTGCGAAGCCAGCATTGGAATCATCAAGATGTTGTCACAAAAGTTGTTTTCAGTCCAGATGGTCAAAGAATCCTGAGTTGTAGTGAGGATCAATTCATGAAGGTGATTGATGTTGACACTGGGCTGGAGATTTATTCAAAGGACATTGATCAGCCAATAAGATCCGCATCATCTGATGGTCAGCTGGTTGTTGCTGGGGTCGAATCAGGCGATGTTGTTATTTGGGATCTGATAAAGATGAATTGTGTCAATACAATTAAACTCAGTGAAAAACCTATTCGAAGCATTGGAGTGTCAGCAAAGTCGAATATCGTTGTCGCTGGTAGTGACGACGGACACGTGTTTGTTCTCAAGCCAGCAGGTTCCCAACTATAA

Transcript

rna-XM_065208985.1

GCGATGAGCCATGACAAGGAAAATACCCGCCAGTGAAAATATTCCGCAGAAAAGTTAAAACATTGGACTACTCTGGGATGAAATAAGGGAACAAGGAAGGTAAAATATACCTTGATATAGCCTAAAAGTGCACAAGCACAGGATATATCATGGAGTCTGTTGATTAACAGATTTTACAAAACCATGGAGATGGATGAACCCTGGCGCAATACCTAGTAGACTGGTATTTTGAATTCGAATTGATCAGGCTTAATCTTTGCCGAATACGATTTGTTGAAGAATTTTcacagtaaatttaagttggCTTCTTTTATCCATTTGTTGTTACAATGGCAGTGGATTATTTTTGGAGAGCGGACGATTATCATTCATACCATAAAACTGAAAGaTTCACTTTACTTGTTTTGGCACCAGgggaaatatattttgaagacTTTAGTGTCTTTTATTACCCAATTGAGAAGTCAGAAGATGAGGCATTTAAAAGGAAGCAAAAAGGAAGACTGAAATTATGTTCAAAGTCACTGGTCTTTGATCCTATTGATAGTTCATATCCAATGCTCAAGCTTCAGTACAAAGATTTGGTCAGTATAGGAAAATGGGATGGATCATTGCTGTCAAGGCTTGCCAGTCAAGGGGATATTCTGATGGTAGAGACAAAACAGTGTATTCAGATGAAAGAGTCAGGGCTTTTGGGACCATACAAGCATATAAGGgagaagaaaaagcatttgttttctttgaattttgggaGTCTGTCTACTACATTACCACTGATTGAGCAGCTTCACAGAGCATCTACATTGAATCCACACGATGAAGCCTCAATGATTGCAACAATAGTCCAATCAATTCAAGCAAGAACAGCATTTAATACAAGTTGGATCGAAGACCTTTATGAGAAGATCATACTTGAAGTAACAGGGGAGAAGATAACACCTCTTGTCTGCAATCCTGGAAAAGTTCTTCTTACATCATCAAGACTTTATTTTCAACCATTTAATAACGTTGAGCCGttACCAGTTATCAAAGTAAAATTGTCTGATGTAAGCAAAGTCataaaaagaagatatttGCTGAGACATGTGGGTTTGGAGATATCTTCGTCAACATCAAATCGTCCTTtatatcttgtttttgaatctgaagaaattagaaattctGTTTACAATCGATTGCTTGAGCAAGAAGATCTCTCATTGGAGGAATCAGAGCAAGAAAACATGTTGCTGAAATGGCAGGCGGGCGCCATTTCGAATTTCGACTATCTAATGTATCTAAACAGCCAAGCTGATCGAAGTTTGAATGACATAACACAGTATCCTGTCTTCCCATGGGTGATTCGTGATTATGAGAGCGATCATCTAGaCTTGGAAGATCCTAAAACGTTTAGAGATTTATCAATACCAATTGGAGCGATTGACAAGTCCCGCTTGCAGCAACTAAAGGTCCGCAGCAAATCAATGCCAGAACCGAAGTTTCTGTACGGATCTCATTATTCCACGCCtggttttgttttatattaCTTGGTACGAGTCGCACCTGAGTACATGCTTTGTCTGCAAAATGGAAGGTTCGATAAAGCAGATCGCCTCTTTAACAGTATTAAATCTTGTTGGGATAATTGCTGTACAGGGCATTCAGACTTCAAAGAGttgaTTCCAGAATTTTATTCCTCTGatgggaaatttttgcaaaatagaatGAATTTACAGCTTGGAACAAGACAAGATGGAGTACGAGTGCATCATGTGGCTTTGCCTCCTTGGGCTAATGACGCCAAAGATTATATACAAAAATCCCGAGATGCATTGGAATGCTCATATGTCTCAGAGAATATCCATCACTGGATTGACTTGATTTTCGGTTACAAACAACGTGGCGAAGAGGCATGGAAGGCGGACAATGTCTTCTACTACCTGACATATGAAGGTGCCGTTGATCTTGACACcaTCACCAACCCTAACGAGCAAGAGTCTTTAAAGCAACAAATTCTAGAATTCGGACAAACACCAAAACAGTTATTTATGCATCCACATCCGCATCGTAAGGCACAGAACATACCACACCCGATACCACTAGAAAGTTTACTTGATACTGATGAACTGGCTCATCATGGATTAAATGAGGAGGATATTCCAGTCATAGAAGTGAAATTGGAAGATATTGATTCATCACAGAATCTGGATGAGAAGAAACCTTTGGAAGATTTGTGCAATCTGAAGCTTGTCCGTACAATGAAAAGTCACAAAGATGCGGTTTTAGGTCTTAGTATCTCCGAAAAAgaagacaatattttttcagtctCTCTAGATTCACAACTGAAAATGAACAGTTTGGAAGACGGTACTCAGATTCGGGGGATGAATTTATCAAGCATGGCACTGTCTTGTTGTGTGCTAATGCCAAACTCAGATTTAGTGCTGGTTGGCTCTTGGGACAATAATCTATACGTTTACTCAGTGGACTTTGGAAGGGCAATATTTGAGAGTAATATTCATAATGATGCAGTATCTTCAATGTGTTGGAAGAACAATATTTTGGTGACAGCTTCGTGGGATTCAACTGTTAAGGTATGGTTCTTCGATCCCAAGCAATTCTCGAAAAAGCGTGGTCCTCCAGAACTGCAGGGAGAGCTTGACCATGATACAGAGGTTACAGCTGTTGACTTGCATGTAGATGGCGATGAGAAATTGATTGTATCTGGAACCAAAGATGgGCATATTTTTCTCTGGAATCTTGATTCTATGGTCCTGCGAAGCCAGCATTGGAATCATCAAGATGTTGTCacaaaagttgttttcagTCCagatGGTCAAAGAATCCTGAGTTGTAGTGAGGATCAATTCATGAAGGTGATTGATGTTGACACTGGGCTGGAGATTTATTCAAAGGACATTGATCAGCCAATAAGATCCGCATCATCTGATGGTCAGCTGGTTGTTGCTGGGGTCGAATCAGGCGATGTTGTTATTTGGGATCTGATAAAGATGAATTGTGTCAATACAATTAAACTCAGTGAAAAACCTATTCGAAGCATTGGAGTGTCAGCAAAGTCGAATATCGTTGTCGCTGGTAGTGACGACGGACACGTGTTTGTTCTCAAGCCAGCAGGTTCCCAACTATAAttcctttttcaatgaaatttaaatgacttttcaagatattttttcaaccgctttctttttatctaattaTCCATGGTAGTATgaatttcaaaggaatttaGCATCACTTCCAGTTGCATTTGAACTGACGGGTATTATCTTTGAGACTTTTATAAATCTTCACCCTTCAGTTCACTTCATTCGCTTTGATATATGTACGGCCTCATTCActataaaataaacattttcaatatgcaAGCATGCGTTTTTAGCATTCTCGaacgttttgaaaatattattgggAAAGATTTCACTGCAGTATTTTTATAACTATGAGCAAaggtatttaatttttctcaaagagaATAACCGGCAAGTATAAAGAATATAATGCAAAAGTTTTGTTGGtgccttcaatttttctcaacaGTTTAGTGGGAAGACACTGATTTTGTTCAGTTATTGTAGCTAAAGTTGAACGTATTATATTTGTTCGGATATATCAGGCTTTTCTTCCAATAAACAAacctacccccccccccctccctatttATATGTGAATGGACTTGACACTTTCTTATTCGTGTGTTAAGTACGGGATTGTTTCTATATCCCACTGATTTTCTGATTCTGAATTTTACACCACATTATTTTTAAGATGCTGTTTGTATGCAGGATCAATGGCATCGTCTTTAAATTGTCTGACCCGATCCTCAATGCTTGGAAAAACAAACTACCAAGTTTATGCATCCAATAATCAGCGCAGTAGTCTCCCTCGGGCATTGTAGGGCATATTTAGTAAATGTAGACAGCCACAAACTTATTTTGTTCTTGGTGGGTTTGTGCTGTCTTCTTCTGTCCTTTAATGTGAATATTTTCCCCTTTAGATAActgataaaaaaacatttttgacgaCCGTTTGTGTATCTTCTATTGAAGTTTGATTTGTTATGTTCCAAGCTAAAGTCgtattttgttcttgattgtcagatttgatttaatattgtacctttaatttattttctgaatttatTTGTGATGTACTATGTGTGTTTCGTTAAGAGCGAGATTATGAAATAACTT

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002222 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20426 all species →	NBCH_WD40	Neurobeachin beta propeller domain	Repeat	Interproscan
PF02138 all species →	Beach	Beige/BEACH domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000409 all species →	Domain	BEACH domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR046851 all species →	Domain	Neurobeachin, beta-propeller domain	Interproscan
IPR036372 all species →	Homologous_superfamily	BEACH domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR050865 all species →	Family	BEACH Domain-Containing	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR023362 all species →	Domain	PH-BEACH domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13743 all species →	BEIGE/BEACH-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18953	NSMAF, FAN; factor associated with neutral sphingomyelinase activation	-	Sphingolipid signaling pathway	ko04071	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.