Gene detail

Detailed information of XP_065065172.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_4:1804172...1810664
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065209100.1

CAACAGCattgtataaaatatatctaaaatggCGGCTAATTTGGATGAAAAGGCGGCGCTGGCACAGGCAGATGATGCAGTTAAATCGCTTTTCCAGTTCAGAGATCACTATTTTGAAACACACGGGCTAGAAAATGCAAGGCAAAAAGCATCAGATTTGGATAAGACCCTAAAAGAGACATTAACAAAACTAGATAAACTTCAATtCTGTATTGACAACAAGGCCTCATACTTTAGCCTTAGAGGGAAAGCTTTAAATGTTGTTGCTGAGTATGACTCACAAGCTGTAGACTTCTTATCAAAAGCAGTCAAGCTTGATCCATCGTTAACAGAAGCCTGGAACAACCTTGGTGAGTGCTACTGGAAAAACAAAGACATTGATGCTGCAAGAAATTGCTTTATGTGTGCTTTAGCTAAGAAAAGAGACAAAGTAACTCTTAGAAATTTGTCTATGGTGCTGAGACAAATTGGAAAAGACTCAACagagattttagaaaatgtgaAAGAAAGTGTGAAAATTGCCAAAGAGGCAGTGGGTCAAGATTTTTCAGATGGAAGGTCATGGTtTGTCCTAGGAAATGCCTACTTGTCATTGTTCTTTGCTGGTGGACAGAGCCCGAGTTCCTTGAAACAGTCAATGGCAGCATATACAAAAGCTGAGAAAGATACCATTGAACGAAATAATCCAGATTTACATTTCAACAGAGCAATGGCATACAGGTATCAAGAAGAGTATGCCTTGGCTTTAGGTGGTTTTGAGAGAGCAGCACTCTTGGACCCACAATGGGAAGACCCCAGAGACGAAAAAAGGAAACTAGAAAGCTATTTGCGCAATACTCTTGAGTACATAGAAGGAAAAGGAAaactcaaagcaaaaaagctgCAGAACCTAGTTCGTTCTCTCAAACCATCTGATGCTGGTCCTTACAGTGGTAGTGAGTACACAAGTCCTGCTGGCAAAACAACCTCAATCACACAagtaatgataaaaaatttggagaGAGAAGTCAACACAGGAAAAGTCATTGTAGGCAAAGTGGCTGCTGTAATACCATTTGAAAATCCAGTACCTTTCCCATTTGTGCTTGTTGATGCTGACATGGAGTGCATTGGTGTTACTGTCTTCAACTTGGTTGCTGGCAAAGGTTTCAATGTTGGGGATTCTATAGCAATACCTGAACCATATGTGCAAGAAACTGAAATCAAACTTGAGAGTGGTGAGATGCTCAACTTCAAAAGTATAAGAGTTGACAACCCAGTAGTAATGGCGGTTAACAAGAGAAAAATTGGAGCAGATAAATTGGCCTTTAGTGTCCTCTCTGTGACAAACAAAAGCGACTGATGTTTCTTGTCCATCACTTAAAGAATATCACCATGCTGGAAGGATCATTCAGCCCTTGAAATGCTCAGCAAtaactttgtcaaaattggAAAGCAAGCTACCTCCTGCGGGGTTTGATTAGCATCCGTTCCCAGTGAGACACAGTTAGGAATTTATTTTAGACATTCAGTTTTTCatgagaaaaactttttttatcacaGTTTGCTTCATGGAACTATAAAAAACACTTCTTACCTGTTGTTAAGAtagattatttatttgttaagaTTTTCCTTCTATAGAAGCTAGTTCATATAGTTAAAGATGAGAATAACTAATGTAGAATTATGGTCTTTGTGCTTTGtcaggaaaaagaaaagttcaagAGCACAATGGTaaatacttttcattttatgtacTCTGTGGTCAAGTTCAGCATTGGACTTTCTACTGCATCATTTGATAACCTCCCTCCAACTCATAGCTGTGGAGTCATGATATTTTTAGACTTTAATGCTTTTGGAATCAAACAACTCAAGTTAGAATAGTGTAACTAGTGTCAGTTTGTTATTCTTTGCTTGACAAACATTAATGTTGACATCAATGTTGGGGTAGACAATCTTTTATGGGTTATCAGTTTAGCTTTGATTAGTAAGTTTTCGATCAAAATCAGTTGTCATAAATTGTAGATAacatattatatttattcatgtcattgtacataaaattttttgctcgTAGTCTAAGGTTCTCTTTTCATTGTCttctattgtttaaaattttaaaaaccgtTAGCAGGTTTAGGCCACTTCATGGTACCATCCTTCAAAGAAACCCACATTTGCATGATGATTGCTACATGATAATGGAACTctgagtagcaacttagaTCCCTTTTTGTACACATCAAAGCATATGCTGCCCTGTGTATTATTCTGCAAAAGAACTGTCTATATAATGAcaaatttgtttcataaaaattaCTTGTTTGGTAATACctaaaaaaactgaagaagCAGATCTATCAGAGATCCCAACATgtagataaat

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006469 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16669 all species →	TTC5_OB	Tetratricopeptide repeat protein 5 OB fold domain	Domain	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR038645 all species →	Homologous_superfamily	TTC5, OB fold domain superfamily	Interproscan
IPR032076 all species →	Domain	Tetratricopeptide repeat protein 5, OB fold domain	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR26312 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24928	TTC5; tetratricopeptide repeat protein 5	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.