Gene detail

Detailed information of XP_065065191.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_4:3175006...3199498
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135691298

ATGGCGGCAGAAAAGATGTTGGGCCGGGTACCAAGTAGCACCCCATACGTTTCATGGTTTGAATTTCTTTTGGATAAAACTGGCAAACTTCTCAAAGAACATGTTGCATCGAAAAATGCAGATCCTTCACCACTACAGTTGTGCAAAACATTTCTCCAGAAATGCTCTATGCCTTCCCAGATAGCTGGTGGCCAGCCTCAAATGCCTGCAGAGAATGAAAGAACAAAACAGCTTAGGTTTCTTGCACTTGTTGTTGCCTCCTACACACACTGGGATTTGGATGAGATCGACGATAGCATTCAACTGCCGTTCCAATATCTATTGATGGTTGAACTTCTACGGAATTATGGTTTATCAGAGAATACAATAACTGGTATGTTTCAGCCTGAAGGTATGGACAACAGACTGCTTATGGTTTGGATTCTATTTCACAGATGGATTGTGCGCTCTATAGTGAAGATAAGTCAGAGCAGAAAGCCGGAAAAAAGCAGAATGAGGCCTGGGAATTCAAACAGTGTTTCACAAGAAGAGCAGATGATCCCCATGCTATATGGCTACCTACCGCACTCTCTGCATGTATTGAACCAGTGCCTCGTGCTTGAAAGAGACCTTGAAGTACCCTTTCCACGCTTGAATGATAGCAATAAAAAAGCTGTATCAAATATAGGTGAAGGTAGCAGTAATGCTGAGATGGACGTAGCTGAAGAGCAAGACGGCAGTGCTTTAGAAAACGATGCTGCTGACACTGATGAGCTGGCTACAGATACCAAAGCTACTGAGAATGTTTATGATGAAGTGATAGCTCTAAAATGTGAACATATCAAGATGCAAATATTTGCAGATCTTGGCCTATTTCACTTCTTCCAAGAAGACTACCACGATGCATTCAAGCATTTCAATCAACTCTTTGAGTATATGCAAAAAGAAAAGGAATGCAAAGCAATGAAGAGTCTACCAGATATCAAAGGTGCCTTTCTTGCCTGTTTGATGATTTGCAGTAAGACAATAAGTGATGATTTGTTACTGCAGGGAAATGTCTCGTTGATGCTGAGAGCTGAAAGATGTCTGTCAAAGAATTTTGAGGGGCTGTATGAACTTCTGAGGGAAGATAACTTGAAGAAAGAATTACCTCTGGATTATCGAATCAACATTGAATCTCTTATTGTTGCTGAGCAACGCAAAGACCTATTGTTCTCCGTATGCGCATGCAATGCTGTCAGATGTTCACTGGCAGGAAACCTGCTTCCTAGTCCCTTTTTAAAGTCTTTAAAGAGTGTTAAAAAAGAAGAGATCGTTATTTTTATAGAGCTTTGTAAGGATATAATTTCCAACGCCTCAAGAAGAGCGGATACTGATAATTTGAAAAGATTGCTAAGGACCATTTCTAGATTTATTTCAAAAGACATGCGGGAAGTCCTGCTTGCGGACCAGCAACTCTCTCCCTTGTTTTCTCTAAAGGGTGGTTCTGGCACAATTGCAAAAGACGCTATGGAAACTGATGACAACAATATCGTGTGTATTTCTCTAGGAGGGAGCTCGCTTCTGGAAGCTGTTAGTGATTTCAACCCCAAAGAAGATGCGCATTTTGTAAAACGTGAGGTTGCCCTTTGCACGAGCCCTGACAAACTGAAACAGCTGGCAGCACGTCTCGGGGAACTGTGCCCTGGTAAAGATATTTCCAAGGGATTCCAGTGCGCTCCCTATACTGAACTGGTAAGCGAAGTTCGTGATCCGATTACCAAAATGCTTCTTCACGTTTACCTCACAAAGGCCCGAGAATTGGCTGGCAAACAGGACCTTGGTCAATCGTTGAGTCTGCTGACAAGTGCATTGGAAGTTTTGAATCAATACTGTCTGCAGTCTGGGAGCAACAGTCAGACAAATAGAATAAAAAATGTCATACACCACGAGATGTTGTCTGCTAAAGTCCAACGTGAGCAAAATAAACAAGACGGCAGCGTCGTGAATGTTGATACTCTGCGCCTCTGCAAAGCCTGCTACCACCACCGAGAGCAAGATCCCCTTCCTAAAAAGGAAATTTATTGTCACATTGTGTCGTACCTTTTAAACAACAAAGAGTGGCAATTTCTGATTGATGAAAGGGGAAATTTTGAAGGAGTAGCAGATTTCATGGAGCTTGGTTGTCAGCTTGCAACGGTTTCTGTTGGTTTATCAAAAGCAGGTGATGCAGTCTGTAAACACGCAAGTGAACTGTGGAACACAGTTATCACAATCGTATGCGACTGTGTTAGTAACAAAAGCGGACAACCTCTGATGGCCTTTGAAAGATCTCCTCAGGGTACCAGGCGTAGTCCTGCTGCCGTCACCAAGAACGACTTCATTATGTTTCTCAAAACACTCAAGAACAGCACTGTGCTGTCTGTGGTGGCATCCTGCTTGATATCTATAATGAATCTTTTGAAGAACAACGGTCAAGTTGAGCTTAAGGCATTGTACAGTCATATTTGGCCTACAACCCTAAACTTTGATAACATGGATGGCAAATGCGAGCAGATTCTGTCCGTTTTGAGTCCACTGCTGGACAAAATTATAAAGTCAGACCCGCGAAACATAGCATGGCTGAGGAACAAAGCTGACATTTATTTAGTTGAAGGTAAACACAGGGATGCGATGAGGCAGTATTTAGAAGTCGGAGCTATGACGTCAAACATGTTTAGCGTACCAGTCCCATTTCATGCTTGGGACGACCAGATTTATCAGCGTATGATCGACTGCTGCATGAAGCAAAAGTTTTACTCACAGGCTGTCGTCTTGTGTCAGTTTGTTGATCCAATCGACTATGGAACGGTTTTGAAATCAATCCAGGAAAATGGCAAAACATGTGATCTGATCGACACGACGTATGACTGTATATGGGATCCAACCATTCTCGAGTTCTTAATTTACGCACATTCAAAACGTGGGGAAGTAGAGAAAAAGCAAATTGCTGTAAAGATGATCAGTCAGCCAGAAATAAACTCTTGTAATAGTCCAGAGACTTTAAAGCAAACTTCGGGCCTGAAGAAGTGCAAGTTCTTAAGGTTCCTTGCCAAATTTTATTGGAACTAG

Transcript

rna-XM_065209119.1

TGCCGATAAGGTGGAAACCACTGAAATTCACTGTAATGGCGGCAGAAAAGATGTTGGGCCGGGTACCAAGTAGCACCCCATACGTTTCATggtttgaatttcttttggaTAAAACTGGCAAACTTCTCAAAGAACATGTTGCATCGAAAAATGCAGATCCTTCACCACTACAGTTGTGCAAAACATTTCTCCAGAAATGCTCTATGCCTTCCCAGATAGCTGGTGGCCAGCCTCAAATGCCTGCAGAGaatgaaagaacaaaacagCTTAGGTTTCTTGCACTTGTTGTTGCCTCCTACACACACTGGGATTTGGATGAGATCGACGATAgCATTCAACTGCCGTTCCAATATCTATTGATGGTTGAACTTCTACGGAATTATGGTTTATCAGAGaaTACAATAACTGGTATGTTTCAGCCTGAAGGTATGGACAACAGACTGCTTATGGTTTGGATTCTATTTCACAGATGgATTGTGCGCTCTATAGTGAAGATAAGTCAGAGCAGAAAGCCGGAAAAAAGCAGAATGAGgCCTGGGAATTCAAACAGTGTTTCACAAGAAGAGCAGATGATCCCCATGCTATATGGCTACCTACCGCACTCTCTGCATGTATTGAACCAGTGCCTCGTGCTTGAAAGAGACCTTGAAGTACCCTTTCCACGCTTGAATGATAGCAATAAAAAAGCTGTATCAAATATAGGTGAAGGTAGCAGTAATGCTGAGATGGACGTAGCTGAAGAGCAAGACGGCAGTGCTTTAGAAAACGATGCTGCTGACACTGATGAGCTGGCTACAGATACCAAAGCTACTGAGAATGTTTATGATGAAGTGATAGCTCTAAAATGTGAACATATCAAGATGCAAATATTTGCAGATCTTGGCCTATTTCACTTCTTCCAAGAAGACTACCACGATGCATTCAAGCATTTCAATCAACTCTTTGAGTATATGcaaaaagaaaaggaatgcAAAGCAATGAAGAGTCTACCAGATATCAAAGGTGCCTTTCTTGCCTGTTTGATGATTTGCAGTAAGACAATAAGTGATGATTTGTTACTGCAGGGAAATGTCTCGTTGATGCTGAGAGCTGAAAGATGTCTGTCAAAGAATTTTGAGGGGCTGTATGAACTTCTGAGGGAAGATAACTTGAAGAAAGAATTACCTCTGGATTATCGAATCAACATTGAATCTCTTATTGTTGCTGAGCAACGCAAAGACCTATTGTTCTCCGTATGCGCATGCAATGCTGTCAGATGTTCACTGGCAGGAAACCTGCTTCCTAGTCCCTTTTTAAAGTCTTTAAAGAGTGTTAAAAAAGAAGAGATCGTTATTTTTATAGAGCTTTGTAAGGATATAATTTCCAACGCCTCAAGAAGAGCGGATactgataatttgaaaagattgCTAAGGACCATTTCtagatttatttcaaaagacatGCGGGAAGTCCTGCTTGCGGACCAGCAACTCTCTCCCTTGTTTTCTCTAAAGGGTGGTTCTGGCACAATTGCAAAAGACGCTATGGAAACTGATGACAACAATATCGTGTGTATTTCTCTAGGAGGGAGCTCGCTTCTGGAAGCTGTTAGTGATTTCAACCCCAAAGAAGATGCGCATTTTGTAAAACGTGAGGTTGCCCTTTGCACGAGCCCTGACAAACTGAAACAGCTGGCAGCACGTCTCGGGGAACTGTGCCCTGGTAAAGATATTTCCAAGGGATTCCAGTGCGCTCCCTATACTGAACTGGTAAGCGAAGTTCGTGATCCGATTACCAAAATGCTTCTTCACGTTTACCTCACAAAGGCCCGAGAATTGGCTGGCAAACAGGACCTTGGTCAATCGTTGAGTCTGCTGACAAGTGCATTGGAAGTTTTGAATCAATACTGTCTGCAGTCTGGGAGCAACAGTCAGacaaatagaataaaaaatgtcatacaCCACGAGATGTTGTCTGCTAAAGTCCAACGTgagcaaaataaacaagacGGCAGCGTCGTGAATGTTGATACTCTGCGCCTCTGCAAAGCCTGCTACCACCACCGAGAGCAAGATCCCCTTcctaaaaaggaaatttattgTCACATTGTGTCGTACCTTTTAAACAACAAAGAGTGGCAATTTCTGATTGATGAAAGGGGAAATTTTGAAGGAGTAGCAGATTTCATGGAGCTTGGTTGTCAGCTTGCAACGGTTTCTGTTGGTTTATCAAAAGCAGGTGATGCAGTCTGTAAACACGCAAGTGAACTGTGGAACACAGTTATCACAATCGTATGCGACTGTGTTAGTAACAAAAGCGGACAACCTCTGATGGCCTTTGAAAGATCTCCTCAGGGTACCAGGCGTAGTCCTGCTGCCGTCACCAAGAACGACTTCATTATGTTTCTCAAAACACTCAAGAACAGCACTGTGCTGTCTGTGGTGGCATCCTGCTTGATATCTATAATGAATCTTTTGAAGAACAACGGTCAAGTTGAGCTTAAGGCATTGTACAGTCATATTTGGCCTACAACCCTAAACTTTGATAACATGGATGGCAAATGCGAGCAGATTCTGTCCGTTTTGAGTCCACTGCTGGACAAAATTATAAAGTCAGACCCGCGAAACATAGCATGGCTGAGGAACAAAGCTGACATTTATTTAGTTGAAGGTAAACACAGGGATGCGATGAGGCAGTATTTAGAAGTCGGAGCTATGACGTCAAACATGTTTAGCGTACCAGTCCCATTTCATGCTTGGGACGACCAGATTTATCAGCGTATGATCGACTGCTGCATGAAGCAAAAGTTTTACTCACAGGCTGTCGTCTTGTGTCAGTTTGTTGATCCAATCGACTATGGAACGGTTTTGAAATCAATCCAGGAAAATGGCAAAACatgTGATCTGATCGACACGACGTATGACTGTATATGGGATCCAACCATTCTCGAGTTCTTAATTTACGCACATTCAAAACGTGGGGAAGtagagaaaaagcaaattgctGTAAAGATGATCAGTCAGCCAGAAATAAACTCTTGTAATAGTCCAGAGACTTTAAAGCAAACTTCGGGCCTGAAGAAGTGCAAGTTCTTAAGGTTCCTTGCCAAATTTTATTGGAACTAGTGGGAAgctttttcttaaagatttaGTTAGATTTCACCTGCAATGctttaagaagaaaatgaaaatttcaattactattttgtttgttttatgtCCTTCATCATCCCTTTTATCCGCTTTTATCATCATCCGTTTATGCCCTTTTTTGCCTTCATCCAGGAAATTCAATTTGAGATCCTCCATGAATTACCTTATTGtttagtttcttaaaaatcaaaaccaaCCAAGAGACTCTTCTGTTATACAAGCAAAAGTGAAATGCATAGGCTAGGCCCAAGTTTATAATGTCGAGTCTTCATTGTGCCCTTACCCTTCCACTAGCTTGTAGTTGAATTCATGAGTATGCATTTATTTGCCTAACTTTGCAATGAATAGAATGGTTTACGAATTGGCTGTCCTTATTCCTTTAACattttgagccaaaataaTATCCGTTCTCCCGATACACAATTATTTCTACAGCAAGATGGCAAAATCTCACTTCCTTCTCCCATTTACTGTAATGCTTCGATTAAGGgcgtttattaatttttctatattttagGAGGCATCTATTCGAAGGGGCGTTAAAAAGAGGGGCGTTTATCGAGTTTGTTTACTCTTCCTAGgcaatatgtttaaaaaagaatcTAATGATGATCGCACTTAGCGCGAAAATCTGAGTAACAACTAAAGAAGTCTGGTCTCAGAAGAAAAAAACGCTATTCGGAAGTTTTAGAGAAggaacttttgaaaagaaagatgaaatttcCCACTGTAACGTCTAAATTTAGAAAGAACGTCGTATATCGTAAATTTCCTTATTATTTCGCGAAATAAAGCTAAAGAAGCATGGTAGTATATTGTTTTTACTGTTCTGTGTGTTTCGATTACGTTTAAGTCGGGGCATCCATTTGAGGGGGCGTTTAATAGAGGGggcatttcttaaaaaatcctttaaaatagaattttattcTAGGGGGCGTTTAAAAGAAGGGGCGTTTAATCGAAGCATTACGGTACGTTTTAACAATGAGAAccaaagaaatttcttcagcTGAAATTTCTGACCCTCAAACCTACTTTGACAGTCAAAAGAATCTGGACAGTCAAGTTAGTAATTAGCTCAAATCAGTCAAGAAGAAGCTGGATGGGAAAAGGTCTAGAATGCCTCCTCATATTCAACACAAGATATGTTAAATTCTTTATGGTTAATTCTTAGTTTACAATACCATTTCGGTGACCTTCAAAAATATGAGCGAGTGCTCCTATTCCgataagatttaaaattttcttcctgttTTACGGTAGCCTATGATCAGAATTTGATGACAAAAGTCAAAGAATTGTCTGCTAGGGTCACATCTTGCCCATGTCTTGACTTCTCAACATGTCTTCAACATATCTTTTTCAGTACCGAAGTTTCATCGTGGACAAAAAATTccgatttttttaagatactGACTgttgatacaaaaaaatttttttagtatttgaaagagattttgataaaattgcaGCAATGAATTTGTTAGCTATTGGATGAGACGTACTCCtctatttctttcttacttttgGGCTTCattaaaaatgagaaaatatcaataatacGAGGGTGATTGTGAAGGAGCTAAGTATTTTACATAGAGTACTTTGCAGCAACAGGCCTCTTTCCGTTGAATGATAAGTTGGCAGTCTGTGCTCTCCTAGTTGCTA

Protein

Pfam domain

No Pfam domain signature was detected for XP_065065191.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR038751 all species →	Family	Integrator complex subunit 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13350 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034472 all species →	Biological Process	snRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13145	INTS8; integrator complex subunit 8	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.