Gene detail

Detailed information of XP_065065267.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_10:11600213...11616377
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135691352

ATGGCTGTACCTTCTTGGTTGCGATCAAGGGAGACTATTCCAAGTGTTAATATCGGAAGAGGGAGATATCTTGAAAAAGTCATTAATGGATTTGAATGTTATTATCAAGATGAGTATCATGTGCATGGAGAAATGGGGATGGCACTGCCACCATTCACAGCAAAGTTTAGCCAAGGATTATTGAATGGCCATTTGCTTGGGGTAGCAGATGAAGATGGAAACATTCAGCTGATTGATTCAAGAAAACAGAAGATAAATTCTGTAATAAAAGGTTGGTCAGCACATTCAAATGCCATTTTTGACATTGCATGGGTTGGCAATGAACCAAAACTTGTAACAGCCTCTGGTGATCAAACAGCTCGTCTTTGGGATGTTGAGAAAGCCGAGACCCTGGGAATTTTTAGAGGACACACATGTAGCCTTAAATCAATTAATTTACAATTCAGAAGTTCTTCTGTCTTTGCGACGGGTGCACGAGATGGAAAAATAATGTTGTGGGATACGCGATGTCACATGAAAAATGGCTATTATGGACCGATAAATGTTATCCACGGTGCTCACGTTCGTGTAGAGAAAAATTCATTGCATATTAATAGCAGGAAAAGAAAGCCGAGAAGAGCTTCTGTTTTATCATCTGATTCTAAACAAAGTGTCACTGCAGTTGTATTTCAAGATGAGAATATCATCATATCATCCGGAGCTTGTGATGGCACAATCAAAATGTGGGACATACGAAAGAACTACAGTGCTTTTAAAGAAGCTCCAATTGCATATCACATGATTCCATACCCAGATCAATCTGCGTCGAGGAAACATGGATACAGCTCTCTTGTTCTGGATTCAACTTCATCTCGGCTTTTCGCAACCTGCATCAATGACGTCATTTATGCTTATCATTCGTCAAATCTGGCTACCCGACCGTTTGCGAGCTTCTATGGTCATCAATCGTCTACTTTCTACATTAAATCGTCAATGAGCCCTGACGACAGGTTTCTCCTCTCTGGATCTGGAGATGACAACTGCTATGTATTCAAGGTAGACGAGCCTCACCAGCCCCCTTGGGTTCTCAAAGGTCACGTAGGAGAAGTTACAAGCGTTTCCTGGTGTCCGTCTGACTTATCAAAGATAGCGACATGCTCTGATGACAATACCTTTAGAATCTGGAGGTCATTAAGCAAGTTTAAGCCATCAAATGGTGCTGCAAATAAGCAAATTGGAGCTTGTGTCCGGGAAGGCTCGATTCAGCATTTGGCTTCACAGGAGCAGATGTTTTATACTAACAATAGACTGAACATTCGATTCAGAGACATTTCTAGCACATGTAAACCAAATATGAATGGATTGATGAGAACGCCTAAAACACCGACATTTTTAGACGATTCCGTAGATTCGATGTCCTGTGGTTCTCTCACTAGCGCAGAAAGTCCAGACGTACCAGCTAAGCGTTGTAAAGGTATATTTTCCACTCCAAAGGGACAAACAGAGCCACCCATCATTGTGACGCCATCCAGTACCCCTAAGAACTCTCGTTTGCTTTTGGAAAAATGGCTGAAGGCGAGTCCCAGTCCGTCACCTGTTGGAGTTTCACCAGAAACAAATAAAAGTCTTCGAAATACACTGAAACAGAAAAACAGTGATAGAAAAGTTTCCGATCACACTCCGAGAAGAAAAATTATTCTTTGTGCTAGGCCATCTTCGGAGCCAAAAGTGTTCAAAAGAAAGAATATAAAAACCGGAACCCTAACGCGATCAGCAGCTAAAAGAAAACTTGTCAGCGATGACAAGGAGAACCCTCCATCGAAAACTATTAGAATGTGTTTTGACCAAGCAAGACTGTCTCCGAAATTAGATAAGGAAAAAAACGAGTTTGAAGATAAAAAAGACGATCCGGTTTCATCAGCCAGGAGAAGAAGACCGTTAAGTAATAACCAAGAAAGAGACATTTTAGATCAGCTAGACGAATTACCTGAAGATGAGGAATTCGACAAGGAAAAGTCACCCAAAGGGCAAATTTAG

Transcript

rna-XM_065209195.1

ATCTTGGGGGTAAAAACTTCGGAGAATGGCAAAATCTACTTTTAACGTCGGGTATGACGAAGTTATTCTCGATCAGCTTCTGAACATAGACGATCTTGCCTTTGATCAATATCCAACGGATATGCTTTGAGTaatgtcagacaaaaagcgCTTTAGtgtgcaattttttttcactttttcgtGTTAACTTCAAGGTTAATTTTTACTCCAACGTTCCAATAGCGCATTTTGCAATGCACTCGACTCAAATTCTAGCGGTTCGGAATTCTGACGGGCTCTCCACCTGAGCCAATGATCAGTGCAAAAACAACAACCGACTTTCAAATGCTCAACTGCTACAAGAGAAGATTGTAACCTGacaatcaagaaaagaaaagcgCAAAGTCTGATTGTGAGTGAgttgaacaaataaaaatctcCTTAAAGTATCTTCTATGTAGAGAAAggatttattttgcaaagtataTTCGAAACCTAcagtttcagaaaaatcaGCTGCTGAAAAGTGTCCTCttgaatccttttttatttatttagggAATCAATGTTGGCAGAGGTGCCGTGCCATGGAGGGTACTTGGGGCCTTAACCGTCCTTGTTATAATTCAGAGATATTTGGTGGTGGATAGCCCCCTTAACCAGTATATGTTCAGTTCGGCGAATTCCATCTTGGCAATGAGAATTAACCTTGTTGTCTACAGCACAGCCCCTTTTTCACACCCCCCAACTCCCTGGTGGGCCAATGTAGTTAGTTACATTTGCTTGCCCCTGGGTTGGGCGGATGTTCTGGGTTGGACGCTGACGCTCCAAAACGAAGAGCCTCTCTCTGCAACATTCATAACGAGGCTTTACAAATTTTGGCGCGCTTTGTAGGTGTTCCATTCGGAAGGGATGagtaaaaattttacttttctaaagAATCAAGTGTTTACCATTTAGTTGGTAATGGCTGTACCTTCTTGGTTGCGATCAAGGGAGACTATTCCAAGTGTTAATATCGGAAGAGGGAGATATCTTGAAAAAGTCATTAATGGATTTGAATGTTATTATCAAGATGAGTATCATGTGCATGGAGAAATGGGGATGGCACTGCCACCATTCACAGCAAAGTTTAGCCaagGATTATTGAATGGCCATTTGCTTGGGGTAGCAGATGAAGATGGAAACATTCAGCTGATTGATTCAAGAAAACAGAAGATAAATTCTGTAATAAAAGGTTGGTCAGCACATTCAAATGCCATTTTTGACATTGCATGGGTTGGCAATGAACCAAAACTTGTAACAGCCTCTGGTGATCAAACAGCTCGTCTTTGGGATGTTGAGAAAGCCGAGACCCTGGGAATTTTTAGAGGACACACATGTAGCCTTAAATCAATTAATTTACAATTCAGAAGTTCTTCTGTCTTTGCGACGGGTGCACGAGATGGAAAAATAATGTTGTGGGATACGCGATGTCACATGAAAAATGGCTATTATGGACCGATAAATGTTATCCACGGTGCTCACGTTCGTGTAGAGAAAAATTCATTGCATATTAATAGCAGGAAAAGAAAGCCGAGAAGAGCTTCTGTTTTATCATCTGATTCTAAACAAAGTGTCACTGCAGTTGTATTTCAAGATGAGAATATCATCATATCATCCGGAGCTTGTGATGGCACAATCAAAATGTGGGACATACGAAAGAACTACAGTGCTTTTAAAGAAGCTCCAATTGCATATCACATGATTCCATACCCAGATCAATCTGCGTCGAGGAAACATGGATACAGCTCTCTTGTTCTGGATTCAACTTCATCTCGGCTTTTCGCAACCTGCatcaatgacgtcatttatGCTTATCATTCGTCAAATCTGGCTACCCGACCGTTTGCGAGCTTCTATGGTCATCAATCGTCTACTTTCTACATTAAATCGTCAATGAGCCCTGACGACAGGTTTCTCCTCTCTGGATCTGGAGATGACAACTGCTATGTATTCAAGGTAGACGAGCCTCACCAGCCCCCTTGGGTTCTCAAAGGTCACGTAGGAGAAGTTACAAGCGTTTCCTGGTGTCCGTCTGACTTATCAAAGATAGCGACATGCTCTGATGACAATACCTTTAGAATCTGGAGGTCATTAAGCAAGTTTAAGCCATCAAATGGTGCTGCAAATAAGCAAATTGGAGCTTGTGTCCGGGAAGGCTCGATTCAGCATTTGGCTTCACAGGAGCAGATGTTTTATACTAACAATAGACTGAACATTCGATTCAGAGACATTTCTAGCACATGTAAACCAAATATGAATGGATTGATGAGAACGCCTAAAACACCGACATTTTTAGACgATTCCGTAGATTCGATGTCCTGTGGTTCTCTCACTAGCGCAGAAAGTCCAGACGTACCAGCTAAGCGTTGTAAAGGTATATTTTCCACTCCAAAGGGACAAACAGAGCCACCCATCATTGTGACGCCATCCAGTACCCCTAAGAACTCTCGTttgcttttggaaaaatggcTGAAGGCGAGTCCCAGTCCGTCACCTGTTGGAGTTTCAccagaaacaaataaaagtcTTCGAAATACactgaaacagaaaaacagtGATAGAAAAGTTTCCGATCACACTCcgagaagaaaaattattctttgtgCTAGGCCATCTTCGGAGCCAAAAGTgttcaaaagaaagaatataaaaacCGGAACCCTAACGCGATCAGCAGCTAAAAGAAAACTTGTCAGCGATGACAAGGAGAACCCTCCATCGAAAACTATTAGAATGTGTTTTGACCAAGCAAGACTGTCTCCGAAATTAGATAAGGAAAAAAACGagtttgaagataaaaaagacgATCCGGTTTCATCAGCCAGGAGAAGAAGACCGTTAAGTAATAACCAAGAAAGAGACATTTTAGATCAGCTAGACGAATTACCTGAAGATGAGGAATTCGACAAGGAAAAGTCACCCAAAGGGCAAATTTAGTCAAGTGTATATTCACGATTGACTGTCGTTGCAGTCACTCCAAGGGGTTTTCAGCAGTGAAATACTTTAAAACGTGGTGTGTTTGCCAAAAAGTTTCGTAACAACACAAAAGAGTCTTTCGTGAAACATCTGCGCGTCCTTCGACTGAATGGAAACACCATGGATCCTGGCGATTTTTACATCACAGTATCGTCTGTTCTTGCTATTAAACTCCGATCCTGGAAACCTCGCCAACATAATTACAAAGACTCTGCGGGAACAATCGCCAAAAAGTGGTCACTCAGTTATATCTTCCTTGTGATTCACTTATACCCTACTTTTCCTCgctaaattattttttaattcgCATTCCCTGTTCACATTTTTATGAACCTTTGATTTACTGtcaagctttttcaaaatgttgcgaaattttcacttgttttaagaaaaccgttcattaaatgttttttctatgGTTGTAGCTGTTCAACTTTGAagattatcattatttttacaatattcaGATGCTGTATCTATCCTTGatatattattattgttatttatcCTAATTTAAGATCGATATGAGAGACAGAAGCCATAA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR051865 all species →	Family	WD repeat-containing CDT2 adapter protein	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22852 all species →	LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007095 all species →	Biological Process	mitotic G2 DNA damage checkpoint signaling	Interproscan
GO:0030674 all species →	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11790	DTL, CDT2, DCAF2; denticleless	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.