Gene detail

Detailed information of XP_065065286.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_4:6784898...6799147
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135691371

ATGTCTTCCAGGGCACGAAAGAAGTTGGCAAAACAAAATGATATACTAAGCCAATTTGCAGTTAGTGACGACGATAACGAACAATTCATAGATGAAATCAAATTCGCGAAGAAAAATGGAACAACTCGTAACAACTTTGACCTGCTATTGGCTGAAGAAAACAACAGAGAGTCTTCATCTGATGGAGAAGTTCACACCAGGAGGGAAGATGCAGAGGTGACTGAATTGCAATGCAAAAATGGAAACAAGAAAACTGGAAAAAAGAAGAAGAAAAAGAAAAAGAAAAAGGAAGGGATTGGCAGTGAAGTGGATGACAATGATTTAAAATCAAATGATCTCAAAACTGGCATTGAGGATGAGATTGATAGAAGTGTAAGGGAGGTCAATGAGCTACTGGGTATCAAACAGACGATGGCAAGGGATAATGATAACATGTCAAATGAAAGTGCAGAGTTCAGCAGCAGCAGATCAATACTTGCAGTTGAACACAGAAATTTGAATCCTGAAAATGAAATGAGAAAGAAGTTTGGCTCGAATGTTGTTGGTGGGGAAAGGAGGAGAAACGCACATAGAAGGCAGCCAGCCAGATCAGTATGGCTAGTTAATCCTAGACCAAACTGGAAGCCTGCATCAAAAACAGGACTAACCATGAAACTGTTAGAGAACAAAGACGGCGTGTATCATTTTACTTTTGAGCATCTACCATCCTATCAAGAAATCCAGTTCAAATTTATGGAAGCTGTAGATTCTGCAAATCACCATAATTTAGTTGATCTTCTGAACCACTATCCAAACCACATCGACTCACTATTGCAGTTAAGCGAAGTATGCAAAATAAGCGAGGATCACCAAATGGCTGCTGAGCTGATTGAGAGAGCGTTGTACATCTTTGAACGGAATTTTCATACACTATTCAATGTTACCCGTTGCAACAGCAGACTTGAATATCGAAGAGCAGAAAACCGGGCGTTTTTTCTTGCCTTGTTTCGTCACATGACTTACATCGGAGATAGAGCTTGTTACCGTACATCTTTGGAATTTTGCAAGTTCATTCTGGGACTAGATCCAGAAGATCCATTAGCTGTGCTACTTCTAATTGACTTCTATGCCTTGAAATCAGAACAATACGATTATTTGATTCAACTTTTCAATGAATGGGAGGTATCAAAGAACCTCTTGAAGCTTCCTAATTACTCGTTTTCAGTACCACTGGCAATGTTCCATTCACAAAAGTTTAAGAATGAAAAAGCAAGCCAAATGCTTCAAGATGCTTTGATCAAGTTTCCAACAACCCTGTTATTATTAATGGATAAATGTGGAGTGGTATTGAAAGATGAAATTATTCAGCATCCATACTTCCAGAGGACAAATGACATCAAGCAGTCTGATGGTCTGAACCGGCTGATCGCCTTGTACGTCGGACGAAATTTTTCATTATGGAAAATACCAGAGGTTCTTGATTGGCTGGCAGATTGTGCGTTGGGCGCCATCAAGCGGCTTGAAGCAAACGACCCTCTTCAAAAGCAATGGGAACCTCTGTGGAAGTATTTGTACCAGAAAGTCCCGTATAACATATTTCGACACATTATTATTTCAGATATAAAAGAGGCTGCAAGATCACTACCTCCGGAAATAAGCAGTGTAACTGTCAATACATACGATCCACTACCACCTCCAGACTCAATATCAGGATACACAATACAAAGAAGGTCGCACGAAAATGATGCTGATGGGTTTCTTTCTTTATTCCTCCGTTCATTACTACCAAGCTTTGGGACGGAAAACCAACAGCCGCCTCGAGCACCCCAGCAACCTCTACAACAAGAGGCACAAAGACAGCAGCCTCAGGGAGCGGAGGCTATTGTCAGGCCAGGAGTGGAAAATCGGATAACAGAAAGTGCTCAAAGGCTTATGGGTGCAATGCGAGAATTATTGAACTCAATGACGTACAGAGGAGATTTAGATGAGGTTGGAAATGACGATGAAGGTGGATTTGAAGAAGCTGACTGGGAAGACCCTGAAGAATTCTGA

Transcript

rna-XM_065209214.1

CGTTTTCACATTCGATAAACATTCAAAATGTCTTCCAGGGCACGAAAGAAGttggcaaaacaaaatgatataCTAAGCCAATTTGCAGTTAGTGACGACGATAACGAACAATTCATAGATGAAATCAAATTCGCGAAGAAAAATGGAACAACTCGTAACAACTTTGACCTGCTATTGGCTGAAGAAAACAACAGAGAGTCTTCATCTGATGGAGAAGTTCACACCAGGAGGGAAGATGCAGAGgtgACTGAATTGCAAtgcaaaaatggaaacaagaaaactggaaaaaagaagaagaaaaagaaaaagaaaaaggaagggATTGGCAGTGAAGTGGATGAcaatgatttaaaatcaaatgatCTCAAAACTGGCATTGAGGATGAGATTGATAGAAGTGTAAGGGAGGTCAATGAGCTACTGGGTATCAAACAGACGATGGCAAGGGATAATGATAACATGTCAAATGAAAGTGCAGAGTTCAGCAGCAGCAGATCAATACTTGCAGTTGAACACAGAAATTTGAAtcctgaaaatgaaatgagaaAGAAGTTTGGCTCGAATGTTGTTGGTGGGGAAAGGAGGAGAAACGCACATAGAAGGCAGCCAGCCAGATCAGTATGgCTAGTTAATCCTAGACCAAACTGGAAGCCTGCATCAAAAACAGGACTAACCATGAAACTGTTAGAGAACAAAGACGGCGTgtatcattttacttttgagcATCTACCATCCTATCAAGAAATCCAGTTCAAATTTATGGAAGCTGTAGATTCTGCAAATCACCATAATTTAGTTGATCTTCTGAACCACTATCCAAACCACATCGACTCACTATTGCAGTTAAGCGAAGTATGCAAAATAAGCGAGGATCACCAAATGGCTGCTGAGCTGATTGAGAGAGCGTTGTACATCTTTGAACGGAATTTTCATACACTATTCAATGTTACCCGTTGCAACAGCAGACTTGAATATCGAAGAGCAGAAAACCGGGCGTTTTTTCTTGCCTTGTTTCGTCACATGACTTACATCGGAGATAGAGCTTGTTACCGTACATCTttggaattttgcaagttCATTCTGGGaCTAGATCCAGAAGATCCATTAGCTGTGCTACTTCTAATTGACTTCTATGCCTTGAAATCAGAACAATACGATTATTTGATTCAACTTTTCAATGAATGGGAGgtaTCAAAGAACCTCTTGAAGCTTCCTAATTACTCGTTTTCAGTACCACTGGCAATGTTCCATTCACAAAAGTTTAAGAATGAAAAAGCAAGCCAAATGCTTCAAGATGCTTTGATCAAGTTTCCAACAACCCTGTTATTATTAATGGATAAATGTGGAGTGGTATTGAAAGATGAAATTATTCAGCATCCATACTTCCAGAGGACAAATGACATCAAGCAGTCTGATGGTCTGAACCGGCTGATCGCCTTGTACGTCGGacgaaatttttcattatggAAAATACCAGAGGTTCTTGATTGGCTGGCAGATTGTGCGTTGGGCGCCATCAAGCGGCTTGAAGCAAACGACCCTCTTCAAAAGCAATGGGAACCTCTGTGGAAGTATTTGTACCAGAAAGTCCCGTATAACATATTTCGACACATTATTATTTCAGATATAAAAGAGGCTGCAAGATCACTACCTCCGgAAATAAGCAGTGTAACTGTCAATACATACGATCCACTACCACCTCCAGACTCAATATCAGGATACACAATACAAAGAAGGTCGCACGAAAATGATGCTGATGggtttctttctttattccTCCGTTCATTACTACCAAGCTTTGGGACGGAAAACCAACAGCCGCCTCGAGCACCCCAGCAACCTCTACAACAAGAGGCACAAAGACAGCAGCCTCAGGGAGCGGAGGCTATTGTCAGGCCAGGAGTGGAAAATCGGATAACAGAAAGTGCTCAAAGGCTTATGGGTGCAATGCGAGAATTATTGAACTCAATGACGTACAGAGGAGATTTAGATGAGGTTGGAAATGACGATGAAGGTGGATTTGAAGAAGCTGACTGGGAAGACCCTGAAGAATTctgaaaaacaacaatgatACAGTAGAGATAAGAAATTGTCTATAAAAAGTCTCATTTTTGATAactggaatattttttaaatacagaCCAACtcaacaatttattttattcaaattttaattgtaGCAGATGCAGTATCTTGTCCAGTGATGAATAAATAATTGCACATCTTTgtgtcattaa

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004349 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04910 all species →	Tcf25	Transcriptional repressor TCF25	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR006994 all species →	Family	TCF25/Rqc1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22684 all species →	NULP1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:1990112 all species →	Cellular Component	RQC complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24970	TCF25, RQC1; transcription factor 25	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.