Gene detail

Detailed information of XP_065065355.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_4:6819436...6842204
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065209283.1

TTTAATTGTGAGTCATCTGTCATTCATGTTGTGTTGTCACCTCATACTATCAGTCAGGAGGGAGAGTGTGGTCACAACATTGCAAATTTGATTCTTGTTATTCTGCCCTTGAGTAGAGCTAACAGTTATGTCTggcaaattttgagaaataggtGCTTGATCGAATTTGTAGCTAGATGCTGCTGGGCAACATCAAATTTAATGAGCCAAGGGGAAAGAAGTTCTtatgattttgctttgttttgtttagtttaaaaaaaacaggaTAGAAGGTTCTTCTCatacaatgttaaaaaagtcattaaCTAATCATTATTGTGTCATTTCTGACctattttatttaaagcatCATTGGAGCCTTTTTGTAGCTACTATGAATTTTAGAGCTTTCCTAATTACTCCAGAACATACATAAGCAACAAGTACAATTAGGTAAAAGGAATAGGGAGAGTCGCTGTTAAAAGGATTATAACAGCATAATGACTACTATCTGTTGATCTCACGCTGAACTAAGTGGGTTTTCTAAGTAAAAGCTCTTTTTACTCTCCAGCTGTTGCACTTAAGAATATGTTTTGGACTGATAAGCAACTTTCGTCTATTTCGGAATTATTCAGTCCTGTCTAATTCGATGACTCACTAGACGACCTAACTTCAGACAGAAAGAAGTCTTTGTATGCTCTGAATCTCGAAAGTCATTTCGATATTCTGTTGGCTTTTGCAAGCGCAATGGAAAGAGCATAAATTTGTTGCTGCAGAAGAATTCAACCAATCATGAGAATACCTAAACTGTAAAAGAATGCATTGCCTTGGCTGAGGCTGGAATATCACCTTACAGTGGAGAAACATGTCACCATCCACCATTGCTGATTTCTTTGTTCATGTTTCTGGAAGACAATCTTTCATTCTGTGTTCCTTACCTTTTCATACTTTGTGACATTGTTGGTGGTTATCTTCTTATGAAAGGAgctaaacattttgttgaaaagcaGATTAGATACCAAACACTTATAAAGCACAGGCCTGACGTCGAGACTCTGCTATGGGTAAAGGAGGACCTTCATCATATTCCCTATTTTGTTGGGTTATtGTAtctttttaatccattttcaCTAGTGACCTATGGAGCTTCTTCAACAGTTTTGATAAACAACTTTTTGACTTGCAtagttcttttctttttggtgAAAGGTTATGAAAAATGTGCTACAGTAGTGCTTGCCTTGGCGTGCTATTTGTCATTTTATCCAATCATGCTTCTAATACCAATCGCCTTGTCTCATACCGAGGATGGCAGCAAGATATCTTGGAGAAAAGTAACAAGCATTGTCTCTGTTTTCCTAATGATGTCGTGTGTTCTCCTTCTTTGCTCGTTCAAAGTTTTCGAGAGCTGGGATTTTATCAACGctgtttacttttttatACTCAAAGTTCCTGACCTGACTCCGAACATGGGCCTTTTCTGgtacttttttcttgaaatgttcGAGCATTTCAGGCTATTCTTTTTATGGGTTCTGCAGCTTCACACATTCGTGTATCTCATTCCTTTCGTAGTTTTATTCAGaaatcaACCAATATTTTTGTGCTATTGTCTAATTGCAACATGCAGTTGGTGTAAATCGTATTCATCTGTTGGTGACGTGATTATTCCATTGGCTATTCTACCGTTATGGAGAAATATAACCCCATACTTTCGTTCTCTGTTTGTTGCGATTGTGATGCTGCTATTTTCTGCGATCTTGGCACCTGTTCTCTACCATCTGTGGGTGTATGCCGGCAGCGGAAACGCCAATTTTTTCTATGCAGCAACTTTGGCTTTCAACCTAGCTCAGATCCTTCTTCTGAGTGATGTTGTTTATGCCTacttaagaagaaaatttcacttAAAACACGGACTAAATCCTTTGACCGAAGATAAAGAAGAGGGTGTCATAGTTATGAAGTAGGTATTCCTTAGTAATATTAGTATCTTAGTTGATATTGActgtcaaaaattaaaagttctAGTATCGACTTACTCCTCTCTTTCTGTGCACTGGATACCGTTGTAGTTCATCATATCACCAACAGATCTTTATTGCTGCATTGCTAAAATGACTTATTAACAATGCCCTAAAACCATCGATCATCAGCCTACGCTGGATACGAATAGGTGAATTTTCAGTAGATTTAAACTTCGACAAACATGTTTAGAGGAAGATAGTGTGAATATgatcaaattatcaaaaagtcTTGGGagtctttcttttctttcacaTCTTTTAATGACATCTTTTGTGCAACTACTTAATTTTGTCAGTTCGTAAGAAGTCTTCTACATTGcggtttttgaaaatttagcatTTATGAAAATTCCACACTCGCATGATTTCATCGAAACCTTGCATTGGAATTTTCGGTacaatctttttgcaaaaataaagctCTTAGGAAACTTATTTCCAAGCTGGATCATTTCTTATATAATCTCAAAAAGGTATGGTTCATAGGGTTCAAAAAAggatagaaaaaaaattttactttgcagtatgaaaaaattttgactcTAAAACCCACATGTTTCTACAATGGTAGAATATCCAAGCAAAAGGCTCTCAATGAATTAcatggaaaaatttcagacaagcagaagttttgtttttgaaagataatttttttaaaagcaagagCAGGAACATTTAAGAAATTAAGAGTCCAAgatgaaaattgattgatGTTTCTCTTGTGGTTTACTCGTgtaccaaaattaaaactaaatcTATAAGAAAATGTATCTAGATGTATGTTCAGTAGTTTTGCTCTATGAAAAACGATATGTCCATGGTATAGAGCTCATTAGCCGTGAATCTTGCTTTCAACATTCTTCTCCAATATTGTTCTGTATAACGTAAATCTTTATTGCAAAGTACTCTTGACGATTCCTTTGAAAGCGAAAGGTTCAGATTCCCAATCAAATTACAAGACAAGTCTAtaactttttgtaaatattgtttgaGCTTTTCAAGCGAAAATTGTTcgaatttgaaaagaatttcattGCAAGTATGACCTTctaagacattttttaaaacgaaataattttagaattgAAACTACAGATAGAGCCATTACcaatatatatttgtttataaataacGAAAAATGTTGAACTCGGAATAATTTTGAACTCGGGAAAATTTTGTTAGTGGaattgtatttgaaaattttacatctAGTCAACCTTATCAAAGTCATATCCATGAAGTCGCGAAGGCCTAGATTTAATATCTAGATTTTGgttgaaatgttttgctaAAAACTTAACAGTAGGAGTATATCAGGCGAGAATGTGTGGAAAcaatcgaaaatttttcaaagcctataaccttacttaATTATCAAAACTCGACCCCTTTAAAAAGTTGCCAAACTATCAAAAACTACTATCATTC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06728 all species →	PIG-U	GPI transamidase subunit PIG-U	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009600 all species →	Family	GPI transamidase subunit PIG-U	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13121 all species →	GPI TRANSAMIDASE COMPONENT PIG-U	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016255 all species →	Biological Process	attachment of GPI anchor to protein	Interproscan
GO:0042765 all species →	Cellular Component	GPI-anchor transamidase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05293	PIGU; GPI-anchor transamidase subunit U	-	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	ko00563	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.