Gene detail

Detailed information of XP_065065449.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_558:3712933...3716817
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065209377.1

TGCGGAAGCGAGACTTTTCCTTGGAAACGGAAAGTAATCAACTTTTATCACCCTAATTACCACAGACCTACTGGACGGAGAGAAGGGAACATAAACATGATAACACGTGAGATTTGCAAAGGTACAAAAGTTTAGTTCTTAAAAGATGGATGCTACTTCAGGCTTCCACTCACCTGTCATCATTGCGATTCTAGATGTGGAAACTACCGGACTGGATGTAAACAAGGATCGGATATTACAACTAGCTTGTCTCAAGTTAGATGATCGCGGAAAACTAATTCAACTTTACGAAACGTACATAAACCCTGGCAAAGACATTGGGAAATTTATGAACTCTGAAGCATATAGAATAAATCATATTGGTGAAGATCTTCTCTGCGATGCACCAACGTTCGCAACAAAGGCCAACgaaattttggatttgttGTCAGATGTTGACATTATGATAGGCCACAATGTTCAGTACGATTATGAAATGCTTAGAAACGAGTTTCAACGGCTGGACAGCGATGTAAGAACATTGGAGAGTGAATCAGACGAAAGTTGGAATGCTGGTTTGACAGTGAGGGGATACAAACAGCAGTTCTTAGCGAAGTTTGATGACCTTAGGTTCAGGCTTGTTGATACATATAAGCTAGCTTTAGTAGCTTTTCCAATGCAAGGTAGCTACAGTTTGTCATCCTTGGCAAATTCCCTTGGAGTTATAGTGACAAAAAGCATTGCTTCAAGGTACAAATGGAAATCTTCCACAAGTGAGAAAGAGATTTTTGTAGTATCAGATCAACAAAGCAAAGAGATGAAATCGCATAATGCAATTACTGATATATTTGAGACAGAGATTTTAGTATCAAAATGTCTTagtattttgaagataaattacAGTGATATTATACAGGGAAAGCACAAGGAATATGAAACAAGCAAAGATCTGATTGATGCAACAAACAAATTGATGGAGAGGACACCAACAAAAGAAGAACTAACCTCCCTTGCAAGATTAGTTCCAGAACAAATGAACATTAACTTTccagaaagaacaaaaaagctTAAAGATATGTGTGCATATGATATAAAGAAAGTAATACAGTTTCTTTCAAACAGAAGGTCTTTAATggaaaaaagacagaaaatggTATGTGAAGGATTTCTGCATGTTGTGTCTGATGCAAAACTATTAGAGGAATTAAATCTGAAAATCATCAACGATAAGCAAAATTCTACAGAACCTAAGAATGCTGCTCTTACTGGTCAGATAGACAACAATGTAGCCAAAACTAATGCAAgtgtcaaaataaaaaatattctaagtGAATCTGGGAGTCAAGAAGAAATATCGCCTCCTTTGCAAGCTACGGATAACGAAAAGGAATCCAGTGGTATGAAAAGAGAATTCAAAAACACTGAAATATTGTCAGATGATGGCAAATTAGAGGAAAATACCGATTTGCATACAAAGATTAAGAAGTTTTGTGAAAGTGCTAACATGacacaaaaaaattctggaGAAACTGACCAGCAGTACCAAAGCATtccaaaagataaaaatgaaagcagTAAATTAGCATATGAAACACCAGACGATACTAAAACTGGATCAAGCTCTAGATGTGACAAGGAAGAAGACAATcttgataaaagtttttctgagagtgaagaattttcttttcctgAAGTTCAAGCTATAACTcctgaaaaagacaaagaaaaggaagaagcTCGCAAGAAAGAGTTGGTATTTTCTCCAGATTTTTAACAGCAATCAACTGGAAACAAGGAGCTGACACATGGAAACAAATCACATCATCTGAAAGAGCTGGTATAGCTTACATTGTTCTTTAACAAGCAACTatatttaacattttaaataaggaaacctttttttctttattttcctttatgatatttattttatttctttagatcTTTGTAAAAACAAGGTGTCTGAGaataaattatgattttgactagattttttattagtttatAAAGAGCATAGTATTTTATTATGTCATCGGTTTGCACCGTTAAGTTatcatttgcttttatttattgaatttgTATGCATTGTGTATCACAATAGCTAAGTTTGTACAGACAAAATTTGTAGCAATAGCTGTTTCTGATAGCAATTGTGTTCTTTCTCTTAAATTTCTTCTCAAATGTGGGTTTTGCTTGAAGATTGACCATAATTCTTTAAAAGTTGATTGCTGAATGCACATATGATTTCCTGCCTTTTAATTCAAATGGACATAGGCTTGTATGCAAATGGACACCAACTGGGTATTTCAActgttttgcaatttctaTGACACTTTTAAGACAACATTTCAGcaatcatgaaaataatttttaaactatcTTTAAAACGGAGAAATATCTGCAGCCAGGGCTAGGCCTAGAGAAAGTTCACTAACCAAAAGAAACCAGTTTCCTGACAACAGGAAATATAAAACTGCTTTCCattgttttgatgataaattGATGATAAAGGGTATAcagtttttctattgaatttgtttcttgATATAACTAGGCAATATGTTTCTATAATGCATTTTAATGCGGCTCACACTGTTCTTCACAATTCTAAAATCATAACATACGCTGATGATACAGTAATATTTGTGTCAGGCAGTTTCATAGATGAAATTGAAGGCAAGCTAAATAATGACCTGGGACACCTAAAAGCCTGGTTCGATGAAAATGAACTACtgataaacttgaaaaagggaaaaacaGAATCAATGATCTTTGGCACAGCTAAACGACTAGGTAAAACAGAGAAAAAGGAgatgaaaattgaagtaaatGGAACATCGATTGCAGGGACTTTAAGTTACAAATATCTTGGAGTACATCTAGATCAATCATTGAACTTTGCAACCCACTTTgacaaggtttttaaaaaggctACAGGAAGATTAAATTTGCTTCGACGCATTAGGAGCTCCATTGACTCTGCGAGCGCTGAAATGATCTATCGGACCATGATAATGCCTGTTTTTGGGTATTGTGGTTCGCTGTCCCTCGGATGGTCTACATCatacaagaaaagaattgaaagtcTTGAGAGTAGAAGCCTTGATGTTATTAGATCGACCAAGGTTACGTCTGTCAGCTTGCGTGTGCCCAGTATCAATGCAGGAGTGAAAAAGAGGTCCTGTAATTTGGTGTTTGATACCTTACAAGGCAATGTTTGTGATGCAATGACAGATTACTTCGTTATAAATGCTCATGGGAAAAATACTAGAAACGACAAACATCTAGTCAAGTTGCCTCAAGTGAAAACAGAATTTGGACGCAAAGGTTTTTACTATCAGGCAGGAAAGGAATTTAATGACCTGCCACTAAGTGCAAGAAAGATTAAATCTAGAACTATTTTTAGACGATTTTTAGAaactcattttatttgatgtaaaattattttatctttagatTGGACTGTATTGAACTTTTGTAATCCGTTTTTAGATCTTACCATTAATTTATTAAGTATCAGGACCCTAATGATAACAGTACATATTGTACTGATAGGTTATCCTGTTAAAATATTCgatttattatattattattattattataaaagtAAATGGAAGCATATCCAGGTTTGCTGTTGAAAATtacattcaaacaaaatttcctgcATGAAATGTTAcaagaagacaaaaaataaaaagattaaatgcTCAACAAACAAGGTTCTTCAGCTTTAAATTACAAGTACATACAATAAAATGCAACACAATTTTACCAATCacaacaatttcaaacatttaatttATTCCTTATTCCAAACATAAAGctgaacatatttttaaaatatgaaaatgcaagttatttaatttaatcaacaaaaagattATTACGaatcatgttttttaaaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00929 all species →	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR013520 all species →	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30231 all species →	DNA POLYMERASE III SUBUNIT EPSILON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065065449.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.