Gene detail

Detailed information of XP_065065508.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_558:11663497...11712611
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135691560

ATGGCTAGGAGCGAGAAAGCGGCCAAATTTGTGCCCGTTCGCGACGAACGTGAGGAATTCAAGTGTAAAGGAGGTGGGAAGAAGAAAGGAAAGGGAAAATTTATCAAAAGCAGCAGTCTTGACAGTGATGGGTTTTTGGATATAAAGAGCTGTATTCAAGATGAAAGGCCCCAGAAGCCTCATCCTCTGCGGAGCCCAATGCGCAGCTTTTTTAGGAATAATACAATCCCACGATCTCTTAAAGCGGCAGAGACCGACCCAGGCTCCAAGCCATTAACCATTTCTCCTGGTGGTGCTGCATGGACCCTTGAAGATGATGTTCCTGTCGTCGAGCTCAGCACCGTGGAAGGGACACCCTTTAGTCAAACCAGCAATCAACTCTATTATAAGACAAGACCCACAATTTCCAAGGCCAATCAAGGATTTTTGCTGGATATCAATGAACAAAGGATGCAGCTTTCTTTAAGTTTCAAGGAAGATTCCTCTAAGATATCAAGTGAAGATTTAAGTAATGAAGATCCAGAATTATGTCCATATCTCCCCAGTTTACGCAGGCGTGCCAATAGTTTGGACCACATCCCTTCTCCATCTACAAGCCCTTCTGCGTTTCGCAAGAAATTCCACTACAGCCCAGTGGAATCACCAAGACCTTCTTTCAACCGAACTATTTCTTTGTCGCAAAGGTCTCCGTTTCGTAAAAGAAATGCATTCACGGAGCCCGAAGCAACACTTTTGGGCCTCAAAGATCAAAGACCACGAAGCTTTAAGAGGCATAAAAATGCAATGGAAGCCTTGTTTGATGCAATCGAGAGACAGGACACAGAAGAGGTTAGAAAGATTATGCAACAGCCGGGCATAAAAGTCAATGGCCTGAACTCAGATGATTTCACGCCGCTTGATATTGCACTCCTGAAGGGAGACATGGACACTGCCAAGCTTCTCCTTCATTTTGGTGCTATTGAAAACCCATCGTTTATCAACGCAGATGCACGAGCAGAAAAGCTCGAGTCTTTAATCACGGAAGCAGATAAAAATGTCAACGATTTTACGGCATCTATCGTCAATTGTACTGCAGATATCAAGGAGAGTGAAAGGCAACTACGAGAATGGGAATGGAGGCTCTATACGCTTCGACTTATGCACAATACGCTTGTAAACACAGACGCGCCAAACGAAATACCAGTAGTATCAGCTGCTCCATTGTCGGATCAATCAGTTATCATCATAATCACTCCAGCCAAGCACAGCAAAAAGGAATTGATTACCAAATATAAAATTGAATGGAGCAGCGACTTGGACTTCCAAAAAATTAAAGGAGTGAAATTAGTAATGGATGTAAGGAGTTTACAGTGTACAATTGATGGACTGGAAAAGGGCAGAAAGTGCTACCTCCGTGTCAGAGTTGGGAATATCAAGGGTTTTGGACCACCAGTTACTCCAGATCCTCCTTTCGTCATTCCATCTTCCTGGCATGAAATCAATGATCAAATACCAAGATACACTGGTTGCAAGGAAAGGTTAGAGGAACTTCTCGAAAAAATCATGGCCCACAAAGCAGCGCTATTCGAGGAGCAAAACGGAGATTTAGGGTCAAAAAATGGTGCTTCTCCCGTTTCGTCGTCGAAAGAATCTCCGAAATTGGGCAGAAAAGGATCTGTGTTCAGAACTGTTTCAAAATATACAAACTTGGTATTCCATTCTGCCCCCAAATTATTAAAACGATTGAAATGCCGTGGCATTTACTTAGCTACATTGCTGTACAACGAGGAGGACGACCGAGTTCTAGTTACGATGGATGACAACATTCCTGTTGTTGAGGTTGATGACAATTTCTCGAAGTCTTTTACGCAAGAATTCTATTGGCTAGCCAAGATAAGTTGCACATGGGAAGATGTACAGCAAATGCTTCTCGACTCATCCAAAGTGCACTCATCGCATGCAATTCACATTCGAAGAAAATTACTGCAGGCCAGTATGGTTCTTCAGAATGCAACTGGGGTCCAAGACCTAGGTTACCTTTATCACAAAGCTTTTAAAGATTCTCATGGTAGCATCCTTCTTCTTACTATCAATAATGCTCAGAAAAGTTTCTGTAGTAGCAAGTCTTCCACCATGAAGTGGATCCCGATTTCAAAACTACAGAAGAAAACCAACGCTGTTCAAGATGCCATTGTTCCTCAACGACTAATTCCTTCTTTGCAGGAGCAAGTAATGTACCATCGACGAAGCAAGGTGTCGGTGTCAAGAGGTCTGTACCTTGGGTACCTGAAACTTCGAACAGCAGTGGACTCATTGTCCATAGTTGTACCAGAGACGCAACCAAATTTACCCCCGCATGTCAAGATAAGAGACATCCCTAATGTAACAAAAGAGGACTGGCTGTGGATACAGTCCATTGGCTCCAGCTTTGATCTGGAAGCTGAAGCCAGCCCGTCGTGCTCTGCATTTGAGAGTAAACTAAAGGCTGCCTCGAAAAAGTTATTTACAAACTTGGGTATCGAGGAGGAGTACGCCAGTCGACACCGAATTTACAACAAGGAGGTTATTGAATTGAACGACAATGTACTTATGGTCCTTCTGTTGCCCCCGGTCGATGACATGTGTACTGCCCCTGGTCAGAGTGACCTCTTTCATGCATTGTCAGGTTACTTGTCTATTCCTGTGCAAACCTTTGAGATGATCAACATGAACACTTACCAGCCAAATATCATGAAAACCTACGCACGGCTGTCGTCCATTCTAGAACTTGAAACATTCGTTTGTCTGCAAACTGCGAGAGAAGCCTTGTCACCCTCCGAGGCCAAGGTTGCCGCTGACAGACAAAAAAAAGTAACCGAATTCCAAAAGGGGGTTGACGCACAATGGCACAATGCAAGGTGGATTCTTGACGTTATTCAAATGGCAAGAGACAAACACTTTAGTTGTGGTGCTCTAGTGGGACACTTGTATGACCCAGGGTACGTTTGCAAAAAAGCCAGTCTTTCTCCTCCATCTTCAAAACACATCAATACTGTAAATCGTACGAAAAATGGATTGTCTCTAAAAAGCAGTAGCTGCAACATTAAAGTTCATGGCACGGAGGAAATTGGTGTCTTACATAACGAATTTGTAGAAATTGACGTAACAATGGAGACAACGGTCAAAGAGATTGTTCACCTTGCAGCACAAGGGATGCTACAATTCATAAGCGAACCGAACAGAAATTTCTTCGAATCTTCGGCTGAAAATATGAGCTTTCTGGGCCTAGTTGTGCTGTCTGGCTCAAAAGAGCGCTGTTTAAGAGATGATTTAAAACTTCTTAGTCTTCAGAACCCATGGGATAGAGGACAAATATTTTTAAGGCTGAAAAAAGAAGCTTACAAAGCAGCAAAACTTAGTAAATCGACGTCGGTGTAG

Transcript

rna-XM_065209436.1

CGCATGTTCGATCAGGAAGAATCAAAGCATTTGCTCTGTCACTTGCTGTACAAATATCGTCCATGGCATGGAAGAAGCAGATAAATCAGTCAGTCTGCTTCTTATATTTCCAGATTTTGTTTATAGAGTTTTGTGAAAGAATGTCGCTATGGCTAGGAGCGAGAAAGCGGCCAAATTTGTGCCCGTTCGCGACGAACGTGAGGAATTCAAGTGTAAAGGAGGtgggaagaagaaaggaaagggaaaatttatcaaaagcagCAGTCTTGACAGTGATGGGTTTTTGGATATAAAGAGCTGTATTCAAGATGAAAGGCCCCAGAAGCCTCATCCTCTGCGGAGCCCAATGCGCAGCTTTTTTAGGAATAATACAATCCCACGATCTCTTAAAGCGGCAGAGACCGACCCAGGCTCCAAGCCATTAACCATTTCTCCTGGTGGTGCTGCATGGACCCTTGAAGATGATGTTCCTGTCGTCGAGCTCAGCACCGTGGAAGGGACACCCTTTAGTCAAACCAGCAATCAACTCTATTATAAGACAAGACCCACAATTTCCAAGGCCAATCAAGGATTTTTGCTGGATATCAATGAACAAAGGATGCAGCTTTCTTTAAGTTTCAAGGAAGATTCCTCTAAGATATCAAGTGAAGATTTAAGTAATGAAGATCCAGAATTATGTCCATATCTCCCCAGTTTACGCAGGCGTGCCAATAGTTTGGACCACATCCCTTCTCCATCTACAAGCCCTTCTGCGTTTCGCAAGAAATTCCACTACAGCCCAGTGGAATCACCAAGACCTTCTTTCAACCGAACTATTTCTTTGTCGCAAAGGTCTCCGTTTCGTAAAAGAAATGCATTCACGGAGCCCGAAGCAACACTTTTGGGCCTCAAAGATCAAAGACCACGAAGCTTTAAGAGGCATAAAAATGCAATGGAAGCCTTGTTTGATGCAATCGAGAGACAGGACACAGAAGAGGTTAGAAAGATTATGCAACAGCCGGGCATAAAAGTCAATGGCCTGAACTCAGATGATTTCACGCCGCTTGATATTGCACTCCTGAAGGGAGACATGGACACTGCCAAGCTTCTCCTTCATTTTGGTGCTATTGAAAACCCATCGTTTATCAACGCAGATGCACGAGCAGAAAAGCTCGAGTCTTTAATCACGGAAGCAGATAAAAATGTCAACGATTTTACGGCATCTATCGTCAATTGTACTGCAGATATCAAGGAGAGTGAAAGGCAACTACGAGAATGGGAATGGAGGCTCTATACGCTTCGACTTATGCACAATACGCTTGTAAACACAGACGCGCCAAACGAAATACCAGTAGTATCAGCTGCTCCATTGTCGGATCAATCAGTTATCATCATAATCACTCCAGCCAAGCACAGCAAAAAGGAATTGATTACCAAATATAAAATTGAATGGAGCAGCGACTTGgacttccaaaaaattaaaggagTGAAATTAGTAATGGATGTAAGGAGTTTACAGTGTACAATTGATGGACTGGAAAAGgGCAGAAAGTGCTACCTCCGTGTCAGAGTTGGGAATATCAAGGGTTTTGGACCACCAGTTACTCCAGATCCTCCTTTCGTCATTCCATCTTCCTGGCATGAAATCAATGATCAAATACCAAGATACACTGGTTGCAAGGAAAGGTTAGAGGAACTTCTCGAAAAAATCATGGCCCACAAAGCAGCGCTATTCGAGGAGCAAAACGGAGATTTAGGGTCAAAAAATGGTGCTTCTCCCGTTTCGTCGTCGAAAGAATCTCCGAAATTGGGCAGAAAAGGATCTGTGTTCAgaactgtttcaaaatatacaAACTTGGTATTCCATTCTGCCCCCAAATTATTAAAACGATTGAAATGcCGTGGCATTTACTTAGCTACATTGCTGTACAACGAGGAGGACGACCGAGTTCTAGTTACGATGGATGACAACATTCCTGTTGTTGAGGTTGATGACAATTTCTCGAAGTCTTTTACGCAAGAATTCTATTGGCTAGCCAAGATAAGTTGCACATGGGAAGATGTACAGCAAATGCTTCTCGACTCATCCAAAGTGCACTCATCGCATGCAATTCACATTCGAAGAAAATTACTGCAGGCCAGTATGGTTCTTCAGaatgCAACTGGGGTCCAAGACCTAGGTTACCTTTATCAcaaagcttttaaagattCTCATGGTAGCATCCTTCTTCTTACTATCAATAATGCTCAGAAAAGTTTCTGTAGTAGCAAGTCTTCCACCATGAAGTGGATCCCGATTTCAAAACTACAGAAGAAAACCAACGCTGTTCAAGATGCCATTGTTCCTCAACGACTAATTCCTTCTTTGCAGGAGCAAGTAATGTACCATCGACGAAGCAAGGTGTCGGTGTCAAGAGGTCTGTACCTTGGGTACCTGAAACTTCGAACAGCAGTGGACTCATTGTCCATAGTTGTACCAGAGACGCAACCAAATTTACCCCCGCATGTCAAGATAAGAGACATCCCTAATGTAACAAAAGAGGACTGGCTGTGGATACAGTCCATTGGCTCCAGCTTTGATCTGGAAGCTGAAGCCAGCCCGTCGTGCTCTGCATTTGAGAGTAAACTAAAGGCTGCCTCGAAAAAGTTATTTACAAACTTGGGTATCGAGGAGGAGtacGCCAGTCGACACCGAATTTACAACAAGGAGGTTATTGAATTGAACGACAATGTACTTATGGTCCTTCTGTTGCCCCCGGTCGATGACATGTGTACTGCCCCTGGTCAGAGTGACCTCTTTCATGCATTGTCAGGTTACTTGTCTATTCCTGTGCAAACCTTTGAGATGATCAACATGAACACTTACCAGCCAAATATCATGAAAACCTACGCACGGCTGTCGTCCATTCTAGAACTTGAAACATTCGTTTGTCTGCAAACTGCGAGAGAAGCCTTGTCACCCTCCGAGGCCAAGGTTGCCGCTGACAGACAAAAAAAAGTAACCGAATTCCAAAAGGGGGTTGACGCACAATGGCACAATGCAAGGTGGATTCTTGACGTTATTCAAATGGCAAGAGACAAACACTTTAGTTGTGGTGCTCTAGTGGGACACTTGTATGACCCAGGGTACGTTTGCAAAAAAGCCAGTCTTTCTCCTCCATCTTCAAAACACATCAATACTGTAAATCGTACGAAAAATGGATTGTCTCTAAAAAGCAGTAGCTGCAACATTAAAGTTCATGGCACGGAGGAAATTGGTGTCTTACATAACGAATTTGTAGAAATTGACGTAACAATGGAGACAACGGTCAAAGAGATTGTTCACCTTGCAGCACAAGGGATGCTACAATTCATAAGCGAACCGAACAGAAATTTCTTCGAATCTTCGGCTGAAAATATGAGCTTTCTGGGCCTAGTTGTGCTGTCTGGCTCAAAAGAGCGCTGTTTAAGAGATGATTTAAAACTTCTTAGTCTTCAGAACCCATGGGATAGaggacaaatatttttaaggctGAAAAAAGAAGCTTACAAAGCAGCAAAACTTAGTAAATCGACGTCGGTGTAGCCGAGCTACCTGTCTGTTAGCAATTTttatgccaaaaaaatttaactctCTTGTAAAATTCGCACGTTGAATGCTTTTGTGTCAATTGGCGTTACTGTTATTTCACTGAAGTCGCTGATGTGATACTAAAGTCATCACTGTAACAATGATATCGTCACTATGATAGCGACGACGTCATCCACTCCGTCACTTCTGCAGCAATCAATGACCGAAAGCAACCTTACAATGAACGCCGTGCATTTGTATCTGTGTGGAATGGAACGGGAAGGTTTTTAAAAGGTTACGAGTCCTAATCAGCTCGAGAGTTGGAAGTGGTCGGCACTGCCAGCAATTTGCTTGATGCGGAGGACTGTAGCGGAGTTGAACCTTAGACCTCTTTTACACTGTGccagataaattttatccgcataaaacttgttcgggttgatttgcgtttacacttaaccgcacaaattttgtccacttcgtcctcccgtttacactgtgccggataactgCAGTCATGTGACCTAAATCGTGCACAGAACGCCTAAAACAAAGTAATCTCTgggcaacaaaataacaacTAAATTCCCGCCAACATAAAAAGACTTTTGATTCTCTCTTCAAAATCATCTGCTTCTCTTTGAGACGAAGTCGAAAGATACTGTCAAAACAACTTAGGCAAAGTTAGTTTCAATAATTCGTTAGtctgaaacaaaataacgCAGAAATAGCGAAGAAAGTGGAAAAAGCTGACAAGGATGCCAATTTTACGTGGACTGACGAAGATGCTGCACTTTTAACACGAGTATTTATCGATTACATGGCAGCCAAGATGGCGAAAGGTCTTGACTGGGAGACAGTGAAAACTAAATAGGAAGAAATAGCCAATTGCTTTCGAGCAAGATACGATGTgcataaaatttatccggataaaaacattcacactgtaccacatagctatccaaactaatttaatccactttcctAGGTGCACTAGTTTGTTCGGATAGCTGCTCTCAAATTCGTGCGGATAGCAtgggtctagtgtaaacgcaacgCCTATCTGAACTAGTTCTGATGCGGATAAGATTTATCCgaacagtgtaaacggggtcttaattcagttttttctcaaacgacttgaaaaaaattgactcAACAAAGTTAACCGTAGCATTACATATCACATGAAAAGGAGCTAAGTTTCCTGTTTCGTGAATTAGTTATTTTTTTACTATTCATTCCATACATGATTCTGTTAGAGCGTGGAAAATTTGCTATACCCGAAATGTTTTGAGGCCGGTTTTTGGTTTCATTGGATAATGTTTGGTACAACGGTAAATAAGTGGCTAAGCTTTTATTATCACGTTGTGTGTCTATAATGGCGATTAATTTCCTTAGAAAGGGAAACGGTTAACCATTGCATTAATCATGATTGTAACTATTAAGGTCCGTTCACACTACTTCGTTTTCAGATGAAAACGAAATCAAACTATTCCATTTTTCCCTTGCGCTCACACTGCTTTGCTACAAAAACGGAGTTATGTGAATACGCAAATGAAAACGGACACTTTTGAATACCGTGCGTATTTAATACGCTCCGTTTCCAATGTGAACACCGAAAATGGAGACATTTGAATACCCTAACAACGACAAAAAATACGTGCTTTCTAGCacgaaaaatttgaaaaattttgaaattgagaattcACAATGGACTGGTAgctgttacaaaaatgtttttcacgatttgctttttttttaatttcattcataatGACGCCAGTTTGATGAGGATTCGTGAAAGCCTCTGTTCCAAAATGAGGCCACCAACAGCGTTTTGttggagcagtgtgaacaccTACCGTATTTAAAGGGTATTCGTTTGAAAATTGCTAAGTGTGAACGGACAGCGTTTTCATCAACGAAAACGGAGCAAAACGAAtacggagcagtgtgaacgtAGCGTAATATTGATTTGATCTGGCTTCAGTTATAGATAAATTATGCTCATTAAGTCACTCGAATAGATGTTTTACTAACTCTATTATAACAAAAGCCAATAGAGAAATCTGTTCTACTACAGTTTTTCAGGTGCAATTATTCATCAACAccaatttgtaaattttgagGGCCCCCTGCTCTTGAAATGGTGTTCATCTCCTGCTCCTCCCTTGCTCCTCCCTTGCTCTTCCCTTGCAATATTGTAATTCTTAAGTAACGATTTGTAGTTATTTCAATATCCTGTAGTTGCCCTTTCAAACGTTTATAGCCTTGAACAGCAAAATACTCAACGTCAATCTCAAACGAAGGTTTAAAAGCGTTCAAACACTTATTCGGTGTTGCTCTTTTTTGTATGTTCAGATGTTTTTGATATGATTTAAATGGTTTTAGGCCGGTTACCTCATTGGGAGGCTTTTTTAtcccaaagaaaaatttaaatacgCACTGGCAGAGTATACTTAGACTTGCGTGACTTGGTAAAATGtatatattattatcatttaaaaagataaatatgaTAAGCAATTGTTTCTTAACCTTTGCTAAACGTTAGTGAACGattcagcaaaaaatattttagaattagaAAGTTTCGTTTTTTCAGTTGggaaccccccccccataatttttaatgctagAATTCTCTGTAAAGCTAATTTAGTTTTAAAGTCTTCCTTATTGCAGTTGAATGTTCTGTATATTTCATGAATAGAATTGAGAATAGGTTCTGTTGTTATAATGttagatttatttatttgagtCGATATAATATTCGCTCATGTGCAGACATTTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR039269 all species →	Family	Ankyrin repeat and fibronectin type-III domain-containing protein 1	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21437 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000132 all species →	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0005819 all species →	Cellular Component	spindle	Interproscan
GO:0061172 all species →	Biological Process	regulation of establishment of bipolar cell polarity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24478	ANKFN1; ankyrin repeat and fibronectin type-III domain-containing protein 1	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.