Gene detail

Detailed information of XP_065065640.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_558:3749603...3771855
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065209568.1

ATAATGATATCTGTTTATCTCTTCGTAGCAACGCGACCTCCTTTGCCAACTACCAACTCAAAGAAGAAACTAAATAATTTCGATTGAGGTGATATATATGTAGATTTGAATcgtttatcaaaataaatattaacgAATAAATGAAGTTTTCAAAGGCTGCTGCCGGATATCTATGAAGGAAACTGGATAGCATTTGTGAGTGATTTGACAACAGAGCCGAATCATAACAACAATGTTAGGTCCTACAGTTAAGGAAGGTGAATTTACTTCCACCATTTATAATTTGataaagtCCCAGAAATATGGAGAAGCTATTCAGATATTGTCCAGAGAAGCACAGAATCATCCAGGTtcAAGAACTGCTCTATCACTCCTTGGCTATTGCTATTATGGaattcaagattttaaaaatgcagctGATTGTTATGAACAGTTGACAAAGTCCAACCCTGAAGTTGAAAGCTATAAGCTATACTATGCACAGTGCTTGTACAAGGCTTTTGAGTTTCAAGAGGCGATGAAAGTTACTCACCAGATAGAAACACCATCCACGCAAGACAAGGTGTTGAAATTACAAGCTGCTATAAAGTACAGTGATGATGATCTCTCAGGTGCACAGGCTTTGGTTGAGCAAGTTCCCTCTGATGACCCAGACAGTGATGTGAACCTTGGGTGCCTTCTGTACAAGGAAGGGAGATATTTGGAAGCATGTCAGAAGTTTACAACAGCCATGAATGTTCTAGGCTATCAGCCTGaTCTGTCCTACAACATAGCACTTTGTCATTATATGATGAAACAGTATGCCCCTGCCCTTAAACATATTGCTGACATAATCGAAAAGGGGATCAGAGAGCACCCTGAGCTCAGTGTTGGCATGACAACGGAGGGAATCGAGGTTCGCAGCGTTGGAAATACACGGGTGTTGCATGAGACAGCATTGATTGAAGCCTTCAATTTGAAAGCAGCCATTGAATACcagttaaaaaattATGAAGCTGCCCAAGAGGCCTTGACAGATATGCCACCAAGAGCTGAAGAGgaACTGGATCCAGTTACATTACATAACCAAGCTTTAATGAACATGGATGCCAACCCAACAGAgggttttgagaaattcagATTCCTTCTGCAACAGAACCCGTTTCCACCAGAAACATTTGGAAATCTTTTACTTCTTTATTGCAAATATCAGTATTATGACTTAGCAGCAGACGTTTTAGCTGAGAATGCAAGTCTTACCTTCAAATTCCTGACACAGTACTTATTCGACTTTCTGGATGCAGTAATTACCCAACAGTCATCCCAAGAAGAGGCcttcagaaaatttgatgacaTCGCTGTGCGGCACACTGACTCACTAAGAAAACTGACCAAGCAGGTTCAAGAGGCAAGACACAATAACGATGATGACGTTGTGAAAAAGGCAGTGAACGAGTACGACGAGGCGTTGGAAAGATACATTCCAGTCCTCATGGCACAAGCAAAGATCTATTGGGATCGTGATAACTATTCGGCAGTTGAGAAGATCTTTCGAAAATCAGttgaattttgcaatgaaCACGAAGTCTGGAAACTAAACGTGGCTCATGTATTGTTCATGCAGgaaaataaatacaaagaGGCTATCGGATTCTATGAACCAATCGTGAAGAAACATTATGATAATattctGTCTGTAAGTGCGATTGTACTTGCAAACCTTTGTGTCTCGTACATCATGACCAGTGCCAACGAAGAGGCTGAGGAGCTAAtgaggaaaattgaaaaagaagagGAGCAGGTTGCCTACGACGACCCGGATAAAAAGACTTACCATCTTTGTATTGTCAACCTTGTAATAGGgaCTTTGTATTGCGCGAAAGGAAATTACGAGTTTGGAGTATCAAGGATTATCAAGAGTCTGGAACCGTATCATAAAAAGCTTGGAACTGACACGTGGTTCTATGCAAAGAGATGTTTTCTCTCCTTAATTGAAAACATGGCGAAACAGATGATAATGTTATCAGATAAAGTCCTGCATGAATCTATGCAATTCTTTGATCATTGTGAAGCTTACGGCAAGAATGTTCAGACTGTAATTGAGCAACCACTCGAAAGCGAGCCATTGCATGCCGGGAAGAACACAGTGACTTACGAGGCCAGGTTATTGAAAAGCCTTTTATTGCGCGTTGCATGAAGCACCTGCTCTCCCCTACAAACCTATTGCAAAAAGCATGCTTGTCATCGCAGATATAATTTatcattgtaaaatttgttgatattaGCAATTATTTTAGTCTCTTAGCTATAAAAATGCGCTTGCTTTAATAAAGGGTTGTCTTGAGCAAGACCAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13174 all species →	TPR_6	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR039941 all species →	Family	Tetratricopeptide repeat protein 30	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20931 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005879 all species →	Cellular Component	axonemal microtubule	Interproscan
GO:0030992 all species →	Cellular Component	intraciliary transport particle B	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan
GO:0120170 all species →	Molecular Function	intraciliary transport particle B binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19683	TTC30, DYF1; tetratricopeptide repeat protein 30	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.