Gene detail

Detailed information of XP_065065753.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_558:8285684...8303191
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065209681.1

TTTGGGCCTAACTCCCACTTGCCAAGCTGACCCAAGCGATTATTTAATGCCAAATGTGAGTCGCCTTTGAAGGATTGCAAGTTGGCTACCTACAGACCATTTACGAAGAAGTATGTTGctctaaaattctaaaatagcTGGATCTGAGTTGTCAGTTTGATGGTTTATTGCTTCACATCAGGTATTGTTGGAACAATGTCAACCCCAAAGAACGTACGAATTCTGCTTGTAGGGGATGATGCAGTGGGCAAAACAAGTTTGATTCTTACACTTGTGAGTGAGGAATTTCCAGATGAGGTGCCAGCAAGAGCAGAGGAGATAACAATAACAGCAGATGTTACCCCAGAAAGAGTTCCATCTCatattgttgatttttcaaCTGCTGAACAATCAGAAGACGAGCTGCgtgatgaaattgaaaagGCTGATGTTATTGCTGTCGTCTATGCCTTGAATGATGATGAAACAATCAGAAGGATAACAGACTATTGGCTGCCAACTATTCATGAAGTTACTGCTGGAGGGACACAAAAACCAATCGTTTTAGTCGGAAATAAGgcTGATGCTGTTGACGTGAATTCTTCAAGAATGGAGGACATCGTTAGTATAATGGATCAGTTCCCGGAAGTTGAAACGTGCATCGAGtgCTCTGCGAGAGACCTCAAGAACATATCTGAGTTGTTTTACTATGCCCAGAAAGCTGTCCTTCACCCAACTGCACCGCTTTattcaaatgaagaaaaggaaTTAAAGCCAAGATGCGTCATTGCATTGGAGAGAATATTCAAGATATGCGACTCTGATAATGATGAACTACTAAGTGACAGCGAGCTTAATGAATTCCAAagattttgCTTCAAGAGTCCACTTCCCCCTCAAGGCCTTTTAGAAGTTAAAGGTATTGTACGGAAAAACATTAACGATGGTCTTGATGACAATAAACTCACGTTTAACggttttttatttctgcaaaCACTTTTCATCATGAAAGGAAGGCAGGAAATCACATGGACAGCACTGAGAAAGTTTGGCTATGGCAATGACCTTGAGCTGAGAGAGGACTATGTCCACCCAAGGCTGGAAGTAGGCTCTGACTCAACTGTAGAGCTGTCAGTTCAAGGCCTGGAATTCATTCGCgatttgttttgtaaatttgatcAGGATGAAGACGATGCCTTGTCCAAAGAAGAACAAGAGgATTTATTTTGCCTTTGCCCGGTCGCACCATGGAATGACGATAATTTAAAAACTGTCGCAACAAATGCGGATGGAATGATAACTTTGGATGGGTTTCTTTCCTTATGGGTTTTAGCTTCATATCTGAACCACGAGTGGACGCTGGCCAACCTCGCATATTTAGGATTCATTCAAGGAGAGCAAGAGAGCCAACTGCCTGCCGTTAGGGTTACAAGAAGTAAATCAGTTGATTTGAGCAAAAGACGGACTaacagaaatgttttcatgtgCTATGTTTTTGGCCCTCCTGGATCAGGAAAGaCGGCATTTTTGCAAGCATTTGTCAACAGATCTTTAAAGGACTATGATCCAAGCACCAGTTTTCCAATTAAATACACGGCAAACTCTGTTAGCATTGGAAAAGAAATCTACTTAGTATTACACGAGGTGAATTGGGACAAATCAGTAGAGAAGTTAAACAGTGATAAAATAGATGTTGCTTGTTTTCTGTATGATGTTTCAAATCCAgattctttttctaaaattggaaaattgcACCAGagGCTAGAAAAAGATATTCCCTGCATGTTTGTCGCAATGAAGAATGATATTTCACCTGTTAAACAGaaTTATGTTATTCCTGTTGCTGATTACTGCAAAAGCTATTCACCTGTTCCTATTCAAaCATTTTCAGCGCTAGACGATACACAAATCgacagaaaagtttttgagaagCTTGGATCACTTTCATTGTATCCCTACAGCAATCAGCTAGATAGCGACAGTTCTTTGTCAAGTATGGCAGTGACGTTTGGTTTAAGTCTTGCGGCCGTTGTAGTTCTAGGAGTGGTAGTATATCGTTTTACAAAAAGAGCCACAAGTGGGAGTAGCTGAAATTCTAACATTTTAGGTGCTTTAGCGAAGCCTGTTATTTGAAAAGGGCCACGTTCACGACAGAGTTACGACAGAAAACGATACCCTGCTGTGGATGCAGAAATATTTGATGCTGTTAGATATTATGAGATTTGTTGACAGTGTAGAATCAATTGTAAAAAGCTTGCTTGCTCCTGCATGACTTTGCCAAACATTGCTACATATGTAAAATATCTTTCGAATATACGCTCAATTAGTTCAATAAGCAAGATAGCATATAGTTTGATACAAAGAAGGACCATTCCTAATTCCCAATTTAAATTAAGCTGCATCTTTAGCATTTACTGAATCTTGGCTGGGCCTCTTCCATTAGATCACCTCatttttagtcaattttttccatcatTCTTTTCTGTTCAAGAGCCTTTCTAAGtaaatcataaataaaactGATGATGCCTCTCTTGGTGTACCACATCCATGATGGAAAGTAATTGATGTTATGCATCAAATGTATGCATAATTAATGTTATGCATAAAGGAACTAttgtttgtcaattttgtGATGATGCTCGACTGCTTCCATTAACTGCTAATTTACCTTCCCATCTGTTCAAGGAAATTTCCCAAGCCATATATTCTACCAGATGTTAGAATAAACCATTAGATTTAATGCAATAAGCATTGGCCTCAAAATGCAACCTTGTTGAACAACATCTGATGTATGAATTGTTGCAGaagtataaattttttgctagcAGCAGGAGGTGCCATTCGCTAAACACTAACATTGAACTACTAATGAATTGTTTCCCGTTATATTATGCTTTCCCTCATTCCTTCCATCACGTTTCTAccctttttcaaatacatcCGATGATTCAAGCTCTTAGATGATACCCCTCGATCCCCATGTACATTTGaattcatgtttttcaaaaattgtattcGTCGTAAAATTGAATAACCCGAAGTTTGCTTTTATACGATTGGGTTCCGCTTTTCTGCCATCATGGAGCTGTTGTTCAAATAGTTTTGTCAAGTTGAAAAGTGCCAGTTTAATAGAGTTTTTAATCTTAACGAAAGAATGTTCATCgctttcattgaaaattttaaacatagtGTGAATTATTTTCGTAgtgtttaatttcaaaagtgcTCCAAATAATTTGCTAAATcgttatcaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08356 all species →	EF_assoc_2	EF hand associated	Family	Interproscan
PF08355 all species →	EF_assoc_1	EF hand associated	Family	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021181 all species →	Family	Mitochondrial Rho GTPase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR013567 all species →	Domain	EF hand associated, type-2	Interproscan
IPR013566 all species →	Domain	Mitochondrial Rho GTPase 1/3, EF hand associated, type-1	Interproscan
IPR020860 all species →	Domain	MIRO domain	Interproscan
IPR003578 all species →	Family	Small GTPase Rho	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072 all species →	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005741 all species →	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0007005 all species →	Biological Process	mitochondrion organization	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07870	RHOT1, ARHT1; mitochondrial Rho GTPase 1	EC:3.6.5.-	GTP-binding proteins	ko04031	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.