Gene detail

Detailed information of XP_065066005.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_558:3914178...3918618
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065209933.1

TTTAAAGCGAGGATGATTGAAAAGAGTAAGACAATTTTGATGAACATGTGAGGTGGAAAGTTGCTAATAATTGTGGCATGGTATTAATCTCAAGAAATGCAGAAATCAAGATGGACTGCAAAATATTCCacgttttttttttcaagatttaaaGTTGCCAGAAGTGGATGTTGTTCAATAAAACCAAGCAATTATGCTCGTATGAATTATTCGTCTCACAGCCAAGGCAGCAATGGTGGATCGACAAATGTTCCCAAATTCGAGCACAGTGCTTCCGAAACACTTGCGTCGTGGATTACCAACAGCTTTGCATGTGATGAACATCTTCCTGCATTTAGGGTCAATGGAAATAAGCTAAAAATACACACCAAACCTCAAGATTTCTACCAAACGctaaaaacaAAAGCTGCCCATGCCAAGAGACGGATTATACTTGCATCACTTTATATTGGAACTGGAAGACTTGAACAAGAGCTTGTAGATACAATTTatgaaagaacaaaagaaatggcagataaaaacaaggaTTTCCTAGTTCACATTTTACTTGATCATTCAAGAGGATCaagaggaagaaaaaattccaagacTATGCTATTGCCCTTGGTGAACGATTTTGGTGACAACGCTAAAGTCTGCCTTTATCACCCACCAACTCTTAGAGGGTTGCTGCATGCACTTGTACCTGAAAGATTCAACGAAACAATTTCAGCCATGCATATCAAAGCATATATCTTTGATGACACTTTAGTGATGAGTGGGGCCAATTTGAGCAATGACTACTTTACAAATAGGCAAGACCGTTGCATTGTATTTGAAGACTGTAAAGAGTTGTGTGACTACTTTCATGGCCTTGTTGAAACAGTGAGTTCCTTTTCATTGGAGCTTGATCCTAACAATACTACTAAAGTTGCAGATGGATTTCCAGAGCATCCATATAAAGGCAGCAAGAAAAAGTATATTGAAGCAGCTAAAGAAAAGATGCAGcagtttttaaaactttgttcaaaGGAACAGCCTCAGAAATTGAGTTTAGATTATGAAGCTACAAATGGTGAATCATGTTTTGAAGACAACTCAGCTGCCCATGATGCTGAAAGGAGGACTGATGCCATATGTGACAGTAAAGattatgaaaatacaaataataatGAGAGCGAATTTCAGAATTTGAATAGGACAACCGAAAAAGGCTTCACAGATACATTAGTTATCCCAACACTGCAGATGTTCTTGTATGGTATCAGACAGGATGAAAGTTTCACTTCCTTATTCTTTGAGTCAGCACCAGAAAAATCTAGCATATTTCTAGCTACTGCATACTTTAATGTTACAAGTAAACACTGGAATGAGATTCTTGCCTCAAAGTGCCAAAACTTTGATATTGTAATGGCTCATCCTAAAGCAAATGGATTTTACAAGGCTCCTGGACCAGCAGgtGGAATTCCTCATGCGTACACGCTTATCGCCAAGCAGTGTTACAAGGATATTGTTCGTTTTAAGCAACAGAATCGACTATCATTTTGGGAGTACCAGAGGCTTGGATGGACTTTCCATGGAAAGGGTCTTTGGGCACAGCTACATGAAGTACCTTTACCTCAAATAACAATGATTGGTTCgtcaaattttggaaacagaTCTGTATATCGAGATCTAGAAGCTCAATtaacaatatttacaaaaaatgagcaaCTTACTAGTCAGCTTCAGGAAGAAAAACGAAATATAACAGAGTATTGTAACAAAGTTGACTCGAATACCTACAAAGACCCTGAGCGTAAAGTCCCTGTGTGGGTTTTTATTATCAGAACATTCATGCGGACATTTTTTTAACGAAAGCGATTGTGAAACGATATGTTGTTTTTAGGAGAGTCGTCTAGCTCTTCAATATTGGTGCAAGACTACTTGTATAAGGCCATACGGCCTTCAGTGGTTTTCTGGTAACTGTATGGTTTGGTAATTGAAAGTCAATATTAATAATTTGTACTGTACCCATAGAGTTTTGTAAACTGTAGCCAGCTGTTTTGgaatactttaaaaaatgcagaGGGCTGACTGACGCAACCAAAAGAACATTTGAAAGTCTAAGGGGCAGCTGTAACGCTGAGGTAGTCTGGAAAAGGGTGTATCTCTAGTCTAGCAATAATTTGAGAAATCTCTAGCCTAGAAATGAGTCAGTTTTTGACAAAGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13091 all species →	PLDc_2	PLD-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016270 all species →	Family	CDP-alcohol phosphatidyltransferase class-II family	Interproscan
IPR025202 all species →	Domain	Phospholipase D-like domain	Interproscan
IPR001736 all species →	Domain	Phospholipase D/Transphosphatidylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12586 all species →	CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0008444 all species →	Molecular Function	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity	Interproscan
GO:0032049 all species →	Biological Process	cardiolipin biosynthetic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00995	pgsA, PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase	EC:2.7.8.5	Glycerophospholipid metabolism	ko00564	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.