Gene detail

Detailed information of XP_065066360.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_558:2917642...2928682
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065210288.1

AGGtgtaaaaaattgtaaacaaatacACCAAACTGCCTTAGCTCTATAGACCTTTTATCCTTTTCATTTGACATTCAAATAGATGCACTgaacaaagaatgaaaaaaaacttacaAGTCTGAAAAGATCAAAGTCATAATCGACCAATCAATATATAATTACACATTGTGAAATAATTACCCATTTAGCCCCAATGATATTTCTCAGAAACAGTTGACACAAAGGTTCTTTAGTTCagttcatttaatttgaaaattccacAAGATACAATTTAATAGCAagtaaacaacaacaaatattaaTAACATACAATATAAATATGTCAtgatttgagaaaagaaaaaaaagaattgtatGCAGGGGAATTTCTCCAGGGGGAGCTCTCTCAGTAGCTAGGCTAATcaaggagagagcaccccctttattgaaaatgactAGTGAAATTGGGAAGTAGTTTCTGGGCATTAAATCGACtttataatttaattcaattcagtTTCAAGGTATTACCACATCCCAGTCAAGCAAGCAACCAGCCACTGCCCCACATGACCAACCCACAGAAGCAAGCCGAAACCCCTGAACACTGTCCCACCCACCAAGGGCAAGGCATGCCCCTTGACACAATCCCCACAATCAAAAGACTCAACTCCCAACTGCAAAGACCATGCAGAGCAACCCCCCACCCCTGATAGGACAAAACATCACCCAGGAAACCAACCAGCCCCCCAAGTAGGCCGATCCCCAAAAAAGGCAGTCCATCATCCATTCAGCCGGAAAGCAGAGCCATCTAAAAAGACTATAGGTTAAGCCAACTATGTAAGgtaattgttttcaaaaaagaaagcttgaGTTTTCGATGAAAGCTAAAGGCAGATGGTGAACAGGAATGCTATTGCAGCACTTTGCTCCGAAGTATCGCACAGACCTGAGACCATATTGAAGAGTATTCTTCTCagtaacaaaaatatcattcttGCTAGCTTGCCGTGTACCATATTGATAAACAGTTTTAACTAGTTTGAAGAAAGAGTGAAAGTAAGGAGGAGATATCGTATTTACACAATCATATACAAAACTCTGAATTTTAATTGAGAGAGGTCATGCAGCTTTAGTATCTTTAAGTCAGCAAACATTGGTGtagaatgaaaattgaaatgttaaaaTGTGATTGCCCTTATTATCCTTTTCTGCAAAAGAAATACTGGATTGATGTAGGTTTCATAGGTAAGACCCCAAACTAAAATTCCATATTGGAGAAAAGGTGAAACAGAGAGTTGTAAAGACAGATCAAAACACTTAAAGGTAAAAAGCGtcttactttgaaaaaaaaccacAAGTTCTAGCTAATTTCTCAGACAATTCTGACAAGTGATATTTCCATGACAGATTTTCATCTAAAAGAACACCAAGAAATTGGACATAACATGTCTGTTTGATGGTAAAGTTTCCAATTTTGATACTGACAGTTTCAGGACAAAAATGCTGAGGAgacttaaaaattataaaattggttttatcaatattcaatGACAATTTGTTAACATCAAGCCACATcttcacttttttcatttccttatTAACTACACGTTGAAGCTGATTAAGACTTTCAGCTTCATAATATATGTtggtatcatcagcaaataaGTAGAAGGTTAATTTTGAGGATGAAAGAGGCGAGTCATTAATgtaaattaagaaaagaaagggtCCAAGGATGGAACCTTGTGGAACTCTGCATGAAACACTGACCTGATTGGAAATAGAACCATTGGAATTAGAGGTTCTGAAGTTGTCTTAGATGATTTGGTGACAAAGATCTGcttacaaagaaatttgattggtAAAAATAGTCAGATTCATCTTATATATTAGTTTTAGTATTTTGAGAAATAGATATCAAGTGATGTCTGGCTTGGAGACTATCGTGTGGAGACACAACAAACCTATGCAgactttttgaaatacaagTGTCATCAATTAGCTAGAGTGGTGAGCAAGATTGCCATcctgaaaatttagaaagggGGCTGTGCTGTATAGCAACACTCATGACCACACCCATGACCACACCCTATAGTcttgcatttgtgttaaagaTCCTCTGTTGTGCATATGAAATCTTTCAAGCTGTTCACCAACTCTGAAAGGCTAATAGAAATTGCTCGTCCATAGAACAACAATTGCATAATAAATGGTTTAAGATTGCAAAGTAAGAAATTTTCCCATCCAAACATTTACTGACTTGTTAAGGTGGCTAAGGTGACAGTTTGTTTTCCCTACTACTGATGGGGTATGCAGTTTTTTAGTCACTACAGTTGACacagtcaatttttttgtactgaagaaaaataaatttctttaaaataataacTTATGTAAGATTCATTCTTTTGAATAAGTGTGTTCTAaagattttcatgaaaaagcaagaaaatttaaagtgtAGTTGAAGGTCAAAATTCTATCAGCCAACAGAAccataacttttgaaatatttttgttttgagtttatactcattttttattttgctaattcttgaaaacataattgttttcagaaacattGAATTCTGAtaattgtttagaaaatgtattttaaagaCAGATATTTGTGTCATTTGCTTAAGAATTGAGACTGAAACAAACAGCAGAAGCAACAAAATGCACCCACTTGATAGGATGGATGAATTTATATAACTGTTTAAGAATATCATATAAAAGCTAGAATAGAAATATATGAGGATTTTTCAGGTAAATAAAGGAAAGCAATTCAGTTGAAAAACTATTGATGAAGAAGAGTATAACAGTACCAGTACGATCACTTTGTAAATGGCCTTCACTAGATATCGTGGAAGGAGGTGCTGGTCCCATAATTGACAAGAAGtcAATGGCTGCGAAGGGCAACATAAAATCAAAcgaaatttatgaaaagaatGTGCCAGTATGCTGGAGAAGGCCAACTCCTATCGATCACAGAACGGATTTTTATATCGAGGAGTGGATCAGAGCAAAGTATGAAAGAAAAGAGTTTATGGAAGGAAATGATTCCAAGCAAGCCTATTGTAGAGGAATGAAGGATGGCCTGCTAAGAAAGAGGGACCGAAATGGAAACTCTTGGAATCTAAGATACTTTAGGCTATCATCTGATACGGGATCACTTTCTTATTACGAAAAAAAAGagGATTTAGCCCCCATAAAAAGACTGAACATCAAAGACGTCAATGTTATACTGTGCAGTGAAAGCAAAACTGAGAAATTTTATAGCATGGAGATTGTGTCACCGGAGGTTAAAGAGAAGAAGGGAAAACCTAAAAAATCTTGCAGCCGCAGTATTTATGTGCACGCAGAAACTGCCAAGgAAATTATAGACTGGTATCTTTGCATCAGATCTGCGAAATTGATGTTACTTAAAGATGAAGGCTACGATATGGATCCGAATGATCTTAATacTGAAATGATACTTTCCACCTGTAGAATCAAGGAAGGGCACTTGAAGAAAAGTGGTCCAAAAGAGAACGATCGATATAAACAAAGATGGCTGACTGTGGAACCAAAcaagttttcatattttgaacaCAAATTGGATGCAACCCCAATTCAAGAAGTATCCCTAAAACCTTCCCCGGAGATATATAGTGTGTCTGAAGGGGTAGATGGCAAGCACCCAGATGAACCATATCCATTTATGGTAAGAACCCCAGAAAGAGTCTTCAATTTCGGAGCAGAATCGAGTGAGGATTTTACGGAATGGATGTCAGCATTCAAAAAGGCATTGGAATTTGAACCAGTTGAAATAAACCGGAATACGAGGATGTCCATAGTTTCTACAGCGTCTCAGTTTTCCCAGCTCTCTGTTTCATCAGGTGACTCTACAGCCAGTTCTTAGATACATTTTCGTCCGTCCCTGGAAGTTTTCAGTCATTTTTAGATTAGTTTAGTATATTAGTGCACAATCTGACTATactcttgtttttttcagtcTCAGATTTGAGACGTAAAATGTTATTAAGCTGACATATATGTCATATGGAAAACaagactttcatttttcataagtCACGGTAATCTATAATATTGCTGgactttatatttttcatcatataATATTACATATTTTTATACAGACGGTGTTTTCGTTGTTTCGTAGTTTTCGTTGTTTTATGCAACTTTGTTAGGATGTACCTTCAAAAATCCCTTATTGAACTTCACTGTCAGATGAAAATAAGATTTCTCGTTGAAATAGGAAGATAACTTGCAAAATGTTTAATCGTGTACTGCAAAAGAGTTTCATGACTGTTGATAGTCAAAATCTCCATCTGATTTAATATCAACAAAGTTTTAAGTATATCATTTATAAGATTTGTTCGAGCAAAGTTTATTGAAGTATGAAAATGAGTATATTCTTCAAGGATTTTAATTTAAACCcagattttgtttgattttatgacgattTGGGCAGACAGCAGACAGCATAAACCCTTTCCCTTTTAAGTTTAACCTACTTTTAGTAGGATTCATTGTCACTAGTTAAGCGTGCAGTTTTTCCTGGTAAATCGGTATTTTTAGGAATGTATTTTGATCTCGAAGAACAAAGTAACTATTTTGGTCTACATATTGTGGTATATAATATATTGTTTCCGTTTTTCTTAAGCCCGAGAagacaatttttgtaaaaaccaTGTTCTTAACATGCCTTAACTTGCTTTTTATGCGCTGTATCTATCATTTCTggattattttatatttctggATCGTTAATATATTACTTTAATGTCAAGCGTGGATACAAGAGCGAGCCTCCCCCCTCTCCCAAATTTTGTGCATGTTTAATTCTGTTGTAGATGGCTGCTTTTGTAGGGGGTAACGCTAGAGTCCAGAACCCAGTAAAAAATGAATCTAccaaattttttgagtttttctgGCTCGCTATTTAGTGCATCTGCATTGCAGTATCTATTAACTGTCtacttttcgaaaaaagttttataattgTTGTTAGCTGGTCACCGATTTTCTCGTTTTTTAAGGTCTAGATCAATACTAATTTTGGTTTTAGGAGAATTAATATGCCTACTGAGTTTTAGCCTGTACTCAAGACCCCTAAATGAGTTGTGACTCCCTTTAAACCaccatgaaaaattatgttgaaaaGTAGTCTATGTGACTGCTATTTATTTCCGCAATTTCGAGTTACAGGGAGTCTGGTTTCTAGTAAATTTCGCGCCAAATTCAATTCTCCCGTCACGCGTAcgattttaaacaaaaatttagcgGAAACTGAGGTAGGtctatataaagtttttatcatttcgtATTTTTTGTATCTAAGTTAGTTACAAACAATTTTAGTATGTAGTATTCGTCATTTTAGATCTTTATTACATGCCCATGAATGGGATTTCATTCCACTTTTACAAGTATTCGCTTTGTCGTCATTTTGATGTAGGCCTATCGTATTGTAAATTGGCCTTACTCCCTCGTGTTTTACATTACAACTTCTTTTAGTTATAAAAATAGTATCTAGTGTTTAATACGTTTGATAAAACCGATTTGTAATTGAttcctttgatttttgatcGATGACTTTAGCCAA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003714 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037278 all species →	Homologous_superfamily	ARFGAP/RecO-like zinc finger	Interproscan
IPR038508 all species →	Homologous_superfamily	ArfGAP domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR052589 all species →	Family	Arf-GAP with dual PH domain-containing protein	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46021 all species →	ARF-GAP WITH DUAL PH DOMAIN-CONTAINING PROTEIN 1-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005547 all species →	Molecular Function	phosphatidylinositol-3,4,5-trisphosphate binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09445	IRF4; interferon regulatory factor 4	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.