Gene detail

Detailed information of XP_065066414.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_558:9498560...9519421
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135692256

ATGGCGGAGAGCTACCAAAACACTACTTTTGCGAGCGACGAATTACAAAATCCTGGACTTCTCGTGAGGAAGAATACCGGTGACCCGAGTCAGCCACAAACCGAGAAGCCTTTCCATTACACACGAAGACCAAAGAAAAAGAAAGATGGAACCTTTAATTACAGTCCAGATGAATATTGCTCACAATACAATGAAACAACAGGAGAATGCCCACAAAGAGATGAGTGCCCTTACCTTCATCGGGTAGCTGGTGACGTTGAACGACGATATCATTTGAGGTATTACAAAACATCACCTTGTGTACATGAGACAGACCCTAGAGGACTGTGTGTGAAGAACGGAGCTCATTGTGCGTTTGCACACGGACCAGCGGACCTGAGACAGCCAGTTTACGATATAAGAGAGTTACAAGCCATGGAGCAAGAGGAAAAAGGGGAGAATAGGCAAATAATTCCAGAAGATCCAAGATGGAATGATACTAAGTTTGTGTTAGCTACATATAAGACGGAGCCGTGCAAGAAGCCGCCCAGGTTGTGTAGACAAGGATATGCCTGCCCTCAGTATCACAATAATAGAGACAGAAGACGAAGCCCAGTCAAATACAAATATAGATCAACACCGTGTCCAAATGTCAAGCATGGAGATGAATGGGGGGATCCTAATGCATGTGAAAACGGGGACAGCTGCCCCTATTGCCATACAAGGACTGAGCAGCAATTTCACCCAGAGATCTACAAATCAACAAAATGCAATGATATGCAGCAGACAGGGAACTGCCCCCGTGGACCGTTTTGTGCATTCGCGCATCCTGAACAAGATTCAATGATTGCTTTGAATACAGTGACCAAAGGAGGCGGAATTTCAATTATTCCTGACAAAGAGATTCTCCAGAGAGGAATTAGCCAGTCTTCACATTCTAGTTTAGGGGAATCTCCCCAGCCATCCCCTGCCAGCCAGCAACCAATAGCACGCCCGCACAGATCAATGTCAACATCAGCTTGCATGGCGTATAGTTCTGTTGCTGAGCATGGTATGAATATGAACAGTCCGTTGAGTACAAGTGCTCCTTCGTACGAGAAGGCACCTGGCTCTGGCAGGCGCAGTGGTAGTATTACTAGCAGAGATGGAGATATGATGCCTTCCCACCACATAGGTAGTGAATGTAGAACATTGAATAAGCAATCTTCGTCAAGCTCCTTCTACGCTTCATCAAACACGGTAGAGTCAGTAGTCGAAAATGCCCTAGACGATCTTCACCTTGGACTGGACGACATTGATATTGGTGACATAGATCGAGATTTGAATGACAATGCTTCGATAGGATCTTCTATTGGCTCTGGACCTCTTGGCTCCGCGCCTCTGCATGTATTCCAAAATGTAGGATCAGATCCGGTGACCATACCCGGGTCTGAAATGATCAGAAATCAGTCGATTACGTCACAGACTTCTACTTCACCAACTTCTCCTCTAGGACAACTGGGGTTCTTTGCTCCGGCGCAGAATCACATTGGGTTTGTGCGAAGTCCATCGGGCAAAAACAACCAACATTCTTCTTCGTTTTTTGATGGGATGAATGTGCAGTCGCCAAAGCAACAACTGACTTCCCCACTTGGCTTGTCAGCTGTCACAGATGCGCAGCGTCTCTCAGAGGAGGTCGTTGCCCTGCGAAGTAAGCTGTCGTCATACGAAGAGTCGTGGAATCAAGCTAAGCATGCCTGCGAGGCCTGGAAACGAGAGGCTAGTGAGCAGTGTGAGAAATCTAAATCTTTAGACAGAGAAAGAATGATGTTGCAAATAAAATTATCAGAGGCGGAAACCGAATTAAAGAATCTTAGAGATGAAATCGAGGCCCGTCATGGCGGCCCTCATATTTATAGCTTAAAGAATGTGAATGAATTAGACTCGCTTTCAATTTTGGAACTGAAACAAATCCACAAACAGCTCAAGGTGGACATATCCCGTTTAGAAAAAGTTATAAGCAAGAAGGAGACATTGCTATGCACTGTCTGTGAAAATAGTGAACGAAGTTGTTTGACGTTCCCCTGTAGCCATTGTGTCATGTGCGAGCATTGTGCCGCTAAGAAGGAGGAATGTCCATTTTGTCACACAGCAATACAACAGAAGAACGCAATTTTCATTCCACTGTGA

Transcript

rna-XM_065210342.1

ACTTTGTGTCCTATTTGGGCGCAGAGGTTCTGCGAAAGCCAAAGACAACATGTCGGGAACGTAATGGCGGAGAGCTACCAAAACACTACTTTTGCGAGCGACGAATTACAAAATCCTGGACTTCTCGTGAGGAAGAATACCGGTGACCCGAGTCAGCCACAAACCGAGAAGCCTTTCCATTACACACGAAgaccaaagaaaaagaaagatggaACCTTTAATTACAGTCCAGATGAATATTGCTCACAATACAATGAAACAACAGGAGAATGCCCACAAAGAGATGAGTGCCCTTACCTTCATCGGGTAGCTGGTGACGTTGAACGACGATATCATTTGAGGTATTACAAAACATCACCTTGTGTACATGAGACAGACCCTAGAGGACTGTGTGTGAAGAACGGAGCTCATTGTGCGTTTGCACACGGACCAGCGGACCTGAGACAGCCAGTTTACGATATAAGAGAGTTACAAGCCATGGAGCAAGAGGAAAAAGGGGAGAATAGGCAAATAATTCCAGAAGATCCAAGATGGAATGatacTAAGTTTGTGTTAGCTACATATAAGACGGAGCCGTGCAAGAAGCCGCCCAGGTTGTGTAGACAAGGATATGCCTGCCCTCAGTATCACAATAATAGAGACAGAAGACGAAGCCCAGTCAAATACAAATATAGaTCAACACCGTGTCCAAATGTCAAGCATGGAGATGAATGGGGGGATCCTAATGCATGTGAAAACGGGGACAGCTGCCCCTATTGCCATACAAGGACTGAGCAGCAATTTCACCCAGAGATCTACAAATCAACAAAATGCAATGATATGCAGCAGACAGGGAACTGCCCCCGTGGACCGTTTTGTGCATTCGCGCATCCTGAACAAGATTCAATGATTGCTTTGAATACAGTGACCAAAGGAGGCGGAATTTCAATTATTCCTGACAAAGAGATTCTCCAGAGAGGAATTAGCCAGTCTTCACATTCTAGTTTAGGGGAATCTCCCCAGCCATCCCCTGCCAGCCAGCAACCAATAGCACGCCCGCACAGATCAATGTCAACATCAGCTTGCATGGCGTATAGTTCTGTTGCTGAGCATGGTATGAATATGAACAGTCCGTTGAGTACAAGTGCTCCTTCGTACGAGAAGGCACCTGGCTCTGGCAGGCGCAGTGGTAGTATTACTAGCAGAGATGGAGATATGatgCCTTCCCACCACATAGGTAGTGAATGTAGAACATTGAATAAGCAATCTTCGTCAAGCTCCTTCTACGCTTCATCAAACACGGTAGAGTCAGTAGTCGAAAATGCCCTAGACGATCTTCACCTTGGACTGGACGACATTGATATTGGTGACATAGATCGAGATTTGAATGACAATGCTTCGATAGGATCTTCTATTGGCTCTGGACCTCTTGGCTCCGCGCCTCTGCATGTATTCCAAAATGTAGGATCAGATCCGGTGACCATACCCGGGTCTGAAATGATCAGAAATCAGTCGATTACGTCACAGACTTCTACTTCACCAACTTCTCCTCTAGGACAACTGGGGTTCTTTGCTCCGGCGCAGAATCACATTGGGTTTGTGCGAAGTCCATCGGGCAAAAACAACCAACATTCTTCTTCGTTTTTTGATGGGATGAATGTGCAGTCGCCAAAGCAACAACTGACTTCCCCACTTGGCTTGTCAGCTGTCACAGATGCGCAGCGTCTCTCAGAGGAGGTCGTTGCCCTGCGAAGTAAGCTGTCGTCATACGAAGAGTCGTGGAATCAAGCTAAGCATGCCTGCGAGGCCTGGAAACGAGAGGCTAGTGAGCAGTGTGAGAAATCTAAATCTTTAGACAGAGAAAGAATGatgttgcaaataaaattatcaGAGGCGGAAACCGAATTAAAGAATCTTAGAGATGAAATCGAGGCCCGTCATGGCGGCCCTCATATTTATAGCTTAAAGAATGTGAATGAATTAGACTCGCTTTCAATTTTGGAACTGAAACAAATCCACAAACAGCTCAAGGTGGACATATCCCGTTTAGAAAAAGTTATAAGCAAGAAGGAGACATTGCTATGCACTGTCTGTGAAAATAGTGAACGAAGTTGTTTGACGTTCCCCTGTAGCCATTGTGTCATGTGCGAGCATTGTGCCGCTAAGAAGGAGGAATGTCCATTTTGTCACACAGCAATACAACAGAAGAACGCAATTTTCATTCCACTGTGAAGGAGAAATAGGTTAGGTTGTATTAAGCCTTTATTGTTGTAACGTAGCTTGGAGATGAAGAATATGCTTTTTAAAGACACCTTAGagaataaatttcattaacatATGGTTTTTATGACACTGCAAAGAATTTGTTGTTAAAGTATTAAACTAATTAGAAGGGATTGATGAAAACtagattattttttgtatttgtaagGCCACAAGTATCttaaaaagccatttttcgAGCAGATAAATTGCTTAAGTTAGTGTAATCCTTCGAACTATCACCACAGGACAATGATTCAATTGGGTGTTCTGGGGTATggtttttaatgaatttgtGCCCTTGATTAAAAGTTTGTTGTTGATGCTATAAGggttgaaattaaagttagttttgaaattttcactttaggagagaaaaattttccggGAGTGAAAAGGATATGTTCTATTGCCTATGCATTTTagaattaaaattcaattcaaatgaGTTTATTTAGCGAAAAATATGTCCTTGTTTACTATTTCATCCTGAAGCATAATTTATAAACGGGGTATGTTTTACGTTTATCCTTTTTAACAGGACTTAAAAGTTAGGATTGCTTTTTGCTGTTTGAATTGTTGGACAATTGTGAGATGGGAGCATTGTAGAGTTATCCGAACcacaatttatgcaaaaggAATCGCAAAAACACCATCTTTaggatttttgtttttctgtgcTTCTTCGCATATTTTTAGGCATAGACATTTTCACGTTTTGCATTCACAGTGTAACCCCGGTTTTCTTAGACTCTATAAACATTAGTTGCAGTAATGGCCTTTAGTTGTTCTTTGCAGTGTCAAACGACAGCCGTTGCTTTGGGACACCTCATTTTACTAAATGACCAAGTTGCCTAATCTGCTTTCGTATCTCAGGTTTGGTTTTATCTTTTACTGATTTCCAAAAGCCTTATTTGGAATGTTGAGATACATTGCCATTAGTGGCTTTAGCCTAGCAATAGCTGTTGTCCAttcagattttttcatttgccatCTAGGTGAAACTATTAAAGATGTTATCTTAAGTATAGAAAGTTGTGTGTTTTCACTCATGTACTCTGCATCTGGCTGCAGCAATTTCCATGCGACTCTGTGACATAAATGGTATTTACAAGCAGCCTTTTGAGGCCCCTATTTCGGTTACAAAGAGATTTCAGTTACGCAAGTTTCAGTTATCGCTCGTTTCCAACCCCTAGTTCTCGTTTCCATTACAAACCCTCGTTGACAGTTAACTTCCTTGTTTTAAGCCTAGCCCTATGTCTGCTCTAGACTGTTGTTGAAATCCATTCCCATTTTGGTCAAAGCAAAgggttttgttttgataagcaTTTCAAGACTAGCCTGCGCCCAGTCtttttgctgttgctgttgctgaaCGGAAAACGTAAGCATAATTTCCAAGACAGCAACAGCAAAAACATTGCTCGCAGGGTTAAGGCCCCCTTAAAACTTTATTGGTCAACAGAGTTCATTAGCAGCAAATAGTTTGAAATCGATAGAAACAGAGTCAAATAATTAGCATGATTTGAAAGCATACCGCTTGAATTATAGTAAATCTAGGATTTAGTTTATATATCGCATTTATCCTATCTTTAAAGTCCTACTGATCTTATATTTTCTAGGAACCTTGAAATTGTTTGCTAATTGCGCTGTCTctaatgatttttgaaattattagaATAAATTGCTTACTAGGAGTGATGCTTGTCACCcatattttataatattaatCCAAGCATTGCATATCTCTTAATCTAGAGTGGGAAACGGTTTGATACGTCCGTCGAATTTGTCACAGCACCCAATGTACAGAATCGAGCTAGTTTTGTTCTAGCACCATTCTTTCTAATAAGTACGCAAGCTCTTTTTACACAACCCACGTTTTCTGGACCGATATCAAGCGATATCATCTTTGAGCGCTACATTGTAAGGCCTGAAGCGGTTTTCGGGACTGCGGGGCCCGGAGCCGAAAACATGCGCTGGGCCATTGCTCTTTTCAActcttattatttttcttagcTGTGGGGCCTACTGTTGCTACCATAAGCGCGGGACCTGGGCCGGGGCCCCCTggaccccctccccctaaaaCCGCCTCTGTTTTGGGCAATCCTGCGGTCAATATCAGGCAAGCCTAGGATTTGTATGAAAAGCAAGCTTGTTATATGAAGTACCTCGGTCCATTATATTGCCTCAGCAACTGTTGGCGGTTTCTCTCGTCGAGAATTTTCCATATTCACTTTGCCCTTGAATAGGTTTATACTCACCCCTTTTCCCTTAATTAACATATTGAGGTCAAATTCctattatttcatttagcTTTATAACCTATTGATCTCAGGAACGTCACAAATACTCTGTTTTATAGCGTTTATGTATTTTGAACGTACGTAGCTTTTGGAGTAGGGATTCCATGTCACTAGCTTTTACTCAATAGTATATAATGAATTCCTTAAAGACAAAGCCAGTAGAGAAAGAATCATTAAGGCGCTTTGCCAGATTCAAAGCACTGAACTCTATATTAGTTCTAGTAGTCTCGAAAAGActtatttctctttttaaaacGAGGTTATGGCACTGCGTATCTACACTTTGCGCTGCTGCGTAGCTTTTCACAATTAAGATATGATACAGGAAGAAGTAATGTTCTAGTATAGTGCTGCAATCTCAATGCTGGCGTTAGATTCGTTTACTTCATAATGTGATAGCATATGTCGTGGGATGTCTGCTGTCATATTTGCAGTATTTTGCGTTCTTTGTGTTAAAAATTCGTCATGATTCAGCCCCCTGTCAAAGTTAGATCGTTACGTATGTTCTGATCCTATTACGTTCCTTCAAGGCAGCAGTAATGCAATATGTTTGCATCAGAATAAACATACCGGCGTATTAGATCAATTGTTATTTTCGTGTAAGAAGTCAGTGGGTAACTTCTCGGACAGTCCTTTGCTATTGTTGAAACCGTTTATTGCTTCAAGTAGTTGCTCTGTGTTTATTCGCCGTATTTAGTGTTAGTGTTTTCACCTTATCTAAAATTAAACCTGTAATTGTTAGTTAATAGCCTCCCAGCTTTGCCATTAGAAAACTGTTAAATTAAAACGCCCGACTGGGCTATCGTCGTTTGACAATAAGCGTTGTTGTCCTAGCCAAATTCGATTCCTTTCGACGTAGGAAAGCCTTTTTTTAGCTATACTAAGTCCAGTATCAAACCATGACCGCACTTGTCATTTTTGCGAATTCATAGAAATTTCCTTCTCTTGCCTTTTTAGTTTTGGGCTAATCAAACGAAAcctttgttttcaagtttcacCAATTGGTTCGCTTAATCCCCACCACGTGAATTCTAACGACACAGCATCCCAgcaaccccccccctcctccgTCATGTGGTCAACGAGTATGCGTAATGGTAAAACCGCTACTACGCATGTTTTTCGATTACATGGACGGGGGTTGCTTGATCATGCGAAATCAAGCATTCAATAAACAGTTCTGTCTCTGCCCTACAATAAACGAGTAAACCAGTATCATTTTGTGACTAGACATTgccttttcaaactttttattatctaatttttgttttaatagctcttttttcaaactgcattaggtattaaatttaaatattgCTATTGCTTAGTGCATTGTAATAATAAATTCTCATGACAAGTAGTTTCATCAATTTGAAACAACATCGAAAACGCAAAAACTCGCATTTCCCAGAAAATTCATAGAAACAAGGAGCCTCTCcagatgttttaaaaaccgTTGAACTATAAATGCCAAATGATGAACTATTCAGAACGTAGCAATAGTGCGACCATCCAGATCGCCAATACCAATTCATTTTCTTGGGGGAGAGGATTTAGGGCAAATGGAAAAGAAGTCATGTGCTTTGAGTTTACAAATAATGAGACGGTTGTCACAAATAACGGGCGCAGTAGTTAGGGATAAGCTTTCTATTTATAGTGAAAACCTTATTTTGTTAATTGCAAAGAGCCCCACCCCCACCCCTTCCAATCTGTCCTAGCACAGTCAGTTACGCCAGGGGGCTATACGGCGCTGTATTTAATTTTCCATTATCCCCCGTCCTTGCAGAATCTCTTCGAATTTCTCGGCTCCCTGTTTACCAAATTTGCAGTTCCAGCTAAACGGAACGAAGCCAATTTTCTTCGTATCCTAGTTAGACAACACCAATCTTTGTACACcgttattttatcaattttcattctaGATAGTTATTTTCTTGAGACTTCAATAATTGTAGAAATGGTGATGATCATACCATTTTGTTGTAATTAATAAACATATCacaaataaatgtatttttcttgtaatgTATCAGCACAATAAACAATAACGCTCTCTTCTAGCTATTGAATTGCATTATCGTAATTGGAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00642 all species →	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR045234 all species →	Family	RING finger protein Unkempt-like	Interproscan
IPR036855 all species →	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14493 all species →	UNKEMPT FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23047	UNKL; E3 ubiquitin-protein ligase UNKL	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.