Gene detail

Detailed information of XP_065066809.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_5:1858655...1900640
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135692562

ATGGATGATGATTTAGATGATTTGGTTGACTTCCTTGATATGGGTGATGATAGTGACTCTGATGAAAACAAATTGATGAATTCAGACAAGAATAATGTTGAATGTGTTGATTCTGATTCTGATGATGATTGTGGTATATGTGTTGCTGAAACAGAAACCTTCAATGAATGCAAAAATGACAAATTCAGCAAGAAAAAGCAGCTAGCTGATTCCTCTCAACTGAAACCTACAAATGAGAAAAGTGAAGAAGAGGAAATCCAGTCAATCAAAGATGAAATAAAATCAACAAAAGAAAAATTAGCAATTTTAGAAAAGAAACTAGCAGAAAAAGAGCATTTAAGAGATGCAAAGAAGTCAAAGACTGTTGAGAAGTCAGATCAAGTGAACTTATCATCAACAAAAACAAAGTATGAGTCACATGCGAAGGAGAAAATAGAAAAGACACCTGAAGAATCAAATATTCTTTTTAAGAAGACAGAAAGGGTGGCTCATGCAACAAAGCGTGAACCTAAAATGGATCGAAGTGGAATTGACAATATCCAACATGAGAAGAAGAAAATGTACATTGACAAAAAGAGAGCACCATCTTCAAAAAGAAATGAAGAGGAACAACCGTGGCAGATGGAATCATATTCTGGGATTCGAATTGTAAATCCTCGAATCTCGATCCAAGAAATGGAGACAAAAATGGATGACCGTCGGTTTATCAAGCTGCACATGCTGTCAAACTACGTAAGCAAGGGTGAAATAACCGGAGATTGGGTGACAATGGGCGTGGTTGTGAAGAAATTGCTACCGAAAACTGCTGCTAATGGGAAAACCTTCAGTATTTGGAAGCTCTCAGATTTGGCTGTTGGCAAAGAAAATTCGGCTGTTAGCTTCTTTCTTTTTGGTGATGTATATAAAGAGTATTGGAAGATGGCAGAGGGCAACGTGATTGCATTACTCAATGCCGCTATAATGCCACAGAGAGATAACGATGAATCATCTTGCGTTGCAATCACCTTGGACAATCCAAGAAAGTTGATGATACTGGGCACATCAAAAGATTTTGGATATTGCCAGGCAACTACTAAAGTAGGAAAGCAATGCAGCTTTATTGTGAATAAGTTTCACGGAGATTTCTGTGAGCACCATATTTCACGCGAATACAAGAAGATTAAATCAAAACGGATGGAGTTTCAATCTGCGTCTGTCGGCCCTGATGCTAGAAAGGCTCGAAATATGAAATCAGTGAAGAAGGAAATTCACTCAGGCCAGCTGTATTACGGAGGGCAGGCTCTTACTTGGCATGATAAAGGGGCATTGAAGAAGAAAGCAGACACTAAAAAACAGACGTTAAGTGCACTGATGGGTTCATCAACAACTGAAAGTCACGTGATGCAGACGTCATCGATGAATGCATGCAACAAAGATAAAGATCAAGGTGAAGTGAATGGAATATCAGAAGAGTTCAAAGATCGACTGAGAATGCCCACCGTGGGGTCAAGAAACCTAAAGAAGTTTTTGCAGAAAGATGAAGAAGAGCAACAAAGTGCTGTAGCTGAAAAAGTTGAGATAAAATCAGCCAAAGATCTTATCAAAGAGGAAAAAGAACTCAAGAAACATAAATTGAAACCAGCCAAAATCGAAATTGCATCTTTGAAACCAAGGCTTTCAACTCCGCCAGCTTTTAATTCAAAATTCAAACCAGTAATTGGAGGTGTTTCTAAAGAAGACGATTTTATAGAATTTTGTGATTCAGATGATATTGTTAGCGATTCATTAAATTCAAGAACGCCAAGTGATGTTCCGGTTGGCTCAAGCCTGAAGAAAACGCCACTTGTTCCCAGACCAGCTAAGCCAAACGAAGCAAAGATGAAGGCCATTTCACTTCTTCGTGCCCAGAAAATCAAACTAGATTTGGAGAAAACGGAGACGAATGCGAAAAAGAAATCTCCTGAATTTTTAAAAAAGATCAAAGATAGAGTCAGAAAGAACACCATAGATGAAGATTCAGAGAATCACGAACCTTCAAAGAAAAGACGCAAAGGAATTTTAGACGATGCTTTAGGTGTTTTGGATTTAGAATCAGAGGAAGGGAAGAAAATTTTGAAAACACAATCTGCCCATGCAGACACCGTTCAACGGGCTGAGGCTGAAAGAGAGGCGGCCTATTTTAGCGTCCTTGAGAAGAAGGAAATGTACGAAGAAAAGATGAAGAATATCACTGAAATGGATGTCAAAGTCGTTTGCTGTAAAATTTGTAAATATATGCATGAATTCCAGTCAAGTTATTGCAAAGATAAAGGTCATTTCACGGTGAAAGTGGATGCAGTCAAAAGGTTTTTCATGTGTAAAAACTGCAAGCATAGGACAACCAGTTTTAAGAAGCTTCCAGTCCAGCCGTGCAGCAATTGTGGTGCAAGTAACTTTGAAAGAACATCAATGTTTCAGGAGAAAAAAGGACCGAAAATCGGGGCTGAGACATTGCTTGTTCGTGGGGAAGAGCATTCGAAGTTTCTTACTACTTTAAAATGA

Transcript

rna-XM_065210737.1

AACAAAATCGCGCGCGAACCTGAAGCCGAATCACAGGGGAGCAAGTTCAGGCGCGAAAACAGGCATAGAGATTCTGCGTGTTCTAAACATCACGAACATCGAAACAAGAATAAAGACAAATCTAAGACATAAACATTGATTTCAACGGGATGGATGATGATTTAGATGATTTGGTTGACTTCCTTGATATGGGTGATGATAGTGACTctgatgaaaacaaattgatgAATTCAGACAAGAATAATGTTGAATGTGTTGATTCTGATTCTGATGATGATTGTGGTATATGTGTTGCTGAAACAGAAACCTTCAATGAatgcaaaaatgacaaattcaGCAAGAAAAAGCAGCTAGCTGATTCCTCTCAACTGAAACCTACAAATGAGAAAAGTGAAGAAGAGGAAATCCAGTCAATCAAAGatgaaataaaatcaacaaaagaaaaattagcaattttagaaaagaaacTAGCAGAAAAAGAGCATTTAAGAGATGCAAAGAAGTCAAAGACTGTTGAGAAGTCAGATCAAGTGAACTtatcatcaacaaaaacaaagtatgAGTCACATGCGAAggagaaaatagaaaagacACCTGAAGaatcaaatattctttttaagaaGACAGAAAGGGTGGCTCATGCAACAAAGCGTGAACCTAAAATGGATCGAAGTGGAATTGACAATATCCAACatgagaagaagaaaatgtacATTGACAAAAAGAGAGCACCatcttcaaaaagaaatgaagaggAACAACCGTGGCAGATGGAATCATATTCTGGGATTCGAATTGTAAATCCTCGAATCTCGATCCAAGAAATGGAGACAAAAATGGATGACCGTCGGTTTATCAAGCTGCACATGCTGTCAAACTACGTAAGCAAGGGTGAAATAACCGGAGATTGGGTGACAATGGGCGTGGTTGTGAAGAAATTGCTACCGAAAACTGCTGCTAATGGGAAAACCTTCAGTATTTGGAAGCTCTCAGATTTGGCTGTTGGCAAAGAAAATTCGGCTGTTagcttctttctttttggTGATGTATATAAAGAGTATTGGAAGATGGCAGAGGGCAACGTGATTGCATTACTCAATGCCGCTATAATGCCACAGAGAGATaacGATGAATCATCTTGCGTTGCAATCACCTTGGACAATCCAAGAAAGTTGATGATACTGGGCAcatcaaaagattttggatATTGCCAGGCAACTACTAAAGTAGGAAAGCAATGCAGCTTTATTGTGAATAAGTTTCACGGAGATTTCTGTGAGCACCATATTTCACGCGAATACAAGAAGATTAAATCAAAACGGATGGAGTTTCAATCTGCGTCTGTCGGCCCTGATGCTAGAAAGGCTCGAAATATGAAATCAGTGAAGAAGGAAATTCACTCAGGCCAGCTGTATTACGGAGGGCAGGCTCTTACTTGGCATGATAAAGGGGCATTGAAGAAGAAAGCAGACACTAAAAAACAGACGTTAAGTGCACTGATGGGTTCATCAACAACTGAAAGTCACGTGATGCAGACGTCATCGATGAATGCATGCAACAAAGATAAAGATCAAGGTGAAGTGAATGGAATATCAGAAGAGTTcaaagatCGACTGAGAATGCCCACCGTGGGGTCAAGAAACCTAAAGAAGTTTTTGCAGAAAGATGAAGAAGaGCAACAAAGTGCTGTAGCTGAAAAAGTTGAGATAAAATCAGCCAAAGATCTTAtcaaagaggaaaaagaactcaagaaacataaattgaaaCCAGCCAAAATCGAAATTGCATCTTTGAAACCAAGGCTTTCAACTCCGCCAgcttttaattcaaaattcaaaccagTAATTGGAGGTGTTTCTAAAGAAGACGattttatagaattttgtGATTCAGATGATATTGTTAGCGATTCATTAAATTCAAGAACGCCAAGTGATGTTCCGGTTGGCTCAAGCCTGAAGAAAACGCCACTTGTTCCCAGACCAGCTAAGCCAAACGAAGCAAAGATGAAGGCCATTTCACTTCTTCGTGCCCAGAAAATCAAACTAGATTTGGAGAAAACGGAGACGAATGCGAAAAAGAAATCTcctgaatttttaaaaaagatcaaagatAGAGTCAGAAAGAACACCATAGATGAAGATTCAGAGAATCACGAACCTTCAAAGAAAAGACGCAAAGGAATTTTAGACGATGCTTTAGGTGTTTTGGATTTAGAATCAGAGGAagggaagaaaattttgaaaacacaatCTGCCCATGCAGACACCGTTCAACGGGCTGAGGCTGAAAGAGAGGCGGCCTATTTTAGCGTCCTTGAGAAGAAGGAAATGTACGAAGAAAAGATGAAGAATATCACTGAAATGGATGTCAAAGTCGTTTGCTGTAAAATTTGTAAATATATGCATGAATTCCAGTCAAGTTATTGCAAAGATAAAGGTCATTTCACGGTGAAAGTGGATGCAGTCAAAAGGTTTTTCATGTGTAAAAACTGCAAGCATAGGACAACCAGTTTTAAGAAGCTTCCAGTCCAGCCGTGCAGcaattgtGGTGCAAGTAACTTTGAAAGAACATCAATGTTTCAGGAGAAAAAAGGACCGAAAATCGGGGCTGAGACATTGCTTGTTCGTGGGGAAGAGCATTCGAAGTTTCTTACTACTTTAAAATGAACTAATTAATTATtgtctttctgtttttgtaatattttagaatttgaagATGTATTAGTCATTGACTGAATGACAAAATCAAATCAGTGCCAAATTGCATA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09332 all species →	Mcm10	Mcm10 replication factor	Domain	Interproscan
PF09329 all species →	zf-primase	Primase zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015411 all species →	Domain	Replication factor Mcm10, C-terminal	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR040184 all species →	Family	Minichromosome maintenance protein 10	Interproscan
IPR015408 all species →	Domain	Zinc finger, Mcm10/DnaG-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13454 all species →	PROTEIN MCM10 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003688 all species →	Molecular Function	DNA replication origin binding	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0006270 all species →	Biological Process	DNA replication initiation	Interproscan
GO:0043596 all species →	Cellular Component	nuclear replication fork	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10736	MCM10; minichromosome maintenance protein 10	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.