Gene detail

Detailed information of XP_065066996.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_5:5410975...5430470
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065210924.1

CCGTAATTTACCACTGCTCGATTCGGCAATGCTCTTGGCCGTTGGTTGGACTTCGCCAGATGAGGAACTAGACTGGGCTTGGATAATTCTCCAATAGTTTTGCAAGATCTCGCCCGCGATAAATCATTTGCtgtgtatttgaatttttcagttaTGgaAAACAACACAGAAAACGATGGAACTACAAATGCAGACACAGAGCAAGAAAAGCCATTCATCAATTATGATGTTGATGTTTTAGATGCATCAAAAGATGGAGAGGCTGTTACATTCACAATCCAGACCAAAACCAAGGAAGAAGATGATTCAGAGAAAGGCGTTGTTGTACTGCGACAATATGAGGATTTTGAATACCTCAGTCATTGTCTTGCTGCACACAATGATATTTTGTCAGTTGTGGTGCCAGTTTTGCCACCCAAGCCAGTTATTACACCATCAGGTGCAGAggcaaaaacgaaaaagcaGTTAGGGAAAGAGTCAAAAACGATGATTGGGGATGATTTCACAAAAGATTGCAAAGCTTTGCAAAAGTACTTGCAACTGGTAATTGCAGAAAAGAAGTTAAATGGGGATGAAACATTAAAAGAGTTTCTAACCAAAGATAAGGCACCAGTGAGAGCGAATGTAAAGAAAGGATTATTTACATCTTTGAAAGGTGCGCTGGATGATGCGCGTTTTCATAACCATAAAGACATTGATGATGAATTTCAAAGCATAAGAACGACAGCTGATCATTTGGCGTTTGCTACCAAAAACTGCAACGAGTGCTACAAAAAGACGAACCTTGCAGAACAGCGCTTTGCACATCAAATTTCCAATTTCACGTCAGTTTTACGTTCGACAGCCGCACAAGACGAAACTGAAAATGACCTGAGCACGCACATGGTAAAATTTGCTGGCTACATTGACGAGTACAAGAAATCATTGGATAAGACAACCGAGATTCAGGAGGATACCTTTGGGTTTACGCTTGACCTTTATTCACGATATCTTGATTCTGCAAAGGAAACATTGTTAAGACGAACTTGCAAATTggttgaatttgaaaatgccaGCAAAGCATTGGATAAAGCAAAACCAAAGAATCTAGAACAGCTCCAGATAGCGAAAAATGAAGCTGAAAAGGTATATGAGGAGACAACAGAACATACCAGAGATGAGaTAAAGAAGTTTCACAATGAACGAGTGTTAGCATTCAAAGATGCAATGAGTAGTTTAGCAGAGCggcaaattgaaaattctaccAAAATGCGTGATTTTCTTTCACAAGCAATTAGTGAGCTTCAAGATCTCTAGATGCTGGATATGTTTCGTATACTCTAGAAATTTTCTATCTTGATGTTTACATTCTGAGATGAATGCTCATCAGAACAGCTAATAATGGAATCATGATCATCCAAATAATCAAATATCAACGCCAAATATCAAGTCTAATTCATAATGATGTTAATATTTGGACATTATTCTAGCATTATTGAAAATCATATAATTGATAATAAACTTTTGAACATTCCTTTTTAACATTGTAGATGTTTTCAGTTAATCTGCAGGGAATCTCTCATGAATCATTGAGCAAAGCATAGAGGAGAATGCTATGTTGCATGAATCATGAGATGCTATGTTGCATAATGTAATTCTGTGTCAAAGCTTAGCTCCTTGAATGTAATGCTAAACAACAAGCTTTTTGCAGCTTCATGTAGTAGTGCTTAACACGTTTTTGATGTTATGTTTAGGTATGTGCAAACATAGGAAATTGTGGGTCTTTCAAAGTGCATGATTCTTACTGGGATTTAATGCTTGTTTTTAAAGGACAGgaactttttttattcaagctTTAATCCCTAGAGTTTGATATCTCTGTTTATTTCAACTAACAGTTCATAAGCCACATTAAGTGACTTGGCTTTGAGAGTAGCTATGCTGGTACTAGATTGTGATGTTCccaatttttcagtaaaaatgtttttgattgaaaCTTGGAAACAAGTATTTGTATTAACACCATCTTGGATTTAAAGTATTAGTACATCAAgtaaaactacaaaaaaacTGTACTGAATCTTTCATTGTGATCAAGCTCTGCTGGAGAGATCCACAATCCATCAAATGTTGCCTTACAAGAGCTTGGACTATAGATTCATAAATGTTCAGTTGCAAGCAgccttttttctattattgttAACTTAATGATTAGAATAAGCCAGGCTTTAATATAAAAGCAGGAGTATTTTGCTGTTTCTCATCTCACTGATAATAGTTTGAGGGTTGCTCTCAAAAGATGAGCACCCTTAGCTGATGTTTAAACAGTGGGTTGTAGTTAGGAATTTGAATCTGTTAATCATAATatatgctaaaaattttcagaaaataattataattagGTCATTTTTGCATCTTCAGGATACAATTAATActgtaaatccttgaattgcCCTCCTCAAAAAAGCCccctcccctcgaataagcccccaccctaaaactacaaattgtcaataagccccccctcaATAAGCCTCTACTGCTACTGTAAATTCTCGAttggacccctccatttgatggttgttgccatctgaggttgcctatggcattttattgaattaccacaacaaattcatacttttggtagtaattaattaaatgctcataaagaaatttctactaaaaaaggaggtcttttaataatgtcttcttaatgtctacaataattttataagtcccccctcgtataagccctCCTCCTCAGATAgccccatccaaaaatataaaaaaaagaataagcccccagggggctaatttgaggatttactATAAGCTCTTCAATCAATatagttttgaaagtttgttttcctttgttcaAATGTATTTAGTGGACAGTTTGATTCACAGTTATCTAAACTAGTTTATTTTTCCCCAGCTTGtaagattaatttttaaatgcataaagaatattttatttcattttccagTTGAGccataaataagaaaaataaagttggttttttatgacttcttcttttctttccctataattctgttgaaaaatatctaCAAGCTAAACAATATACAATGCAATTTCTAATAAaagatatttgacaaaatttatttcaatttgacaaaattcCTTTTATGTTCTGCCAACAGATGTTTATACTGACTTTTGATGTTGTGTTTGCAATGTACGACACATCAGTCATcttctttattctttatcatatctttcttttttgtttcttttgttcttttaatgATATCTTTAGCTGTATTAAAAACTCCAGCGGTTTGTTCACCACATACAAAGCACCTTGAACTCTTCTTGAAATGCTGCAATGCACATTTTTCACAGAAATAGTGTTTACATTTTGTAACAATCGGGTCCTTAAAGCTTTCCCTACAAATCAGACAAGCAAAAGGAAGTTCTTCGTCATCACTATCGATTTCATAAGCATGAGGATCATTTGTGTTGTATTCACCAGACTGATACTCTCTTTCTAGCTGCCATCCATGTTTGTAATCCGAACGATCATGCAAGAATTTACAGCTGTCTCCAAAACCACAATAGCCAGTCTCTTTATAGTCTTTACAGATATCAGGCTGGTAGTCCCATCTAACAGTTGATCTAATATTTAGTGGTGCTCTAATTGGTCCTTGCCTTGAATAAAGATATATCAATTTAGCAACTAAGGTTAGGATTCACATTAAAAACACAGAGAAAATAATTCTGTCTATCACTATCTTGGAGATTAAACAGAgtctatttctaaaaaatcttgaCAGAAATTATCATATCATTGTAaccattcaaatatttttgcttgaattctTGAGATTATTGAAACAGTCAGTGGCTTTTTGGCATATATTCAGAagtgaaataataaaatctaTTGCAATAGACTTTTAGACCCAGTGTGGAATGTAGCTTACAACAGAGATACCCAGCTTTGATTTATTGTTGGAATTACGATGATGATATTTACATTGCACCGTTTCATTTACACTGTCCCAGAAACAATGGACACCTATTTGTTTACTTGATTGACATGCTGTTGCAAACAGTAACACCTCTATTGTTCAGCAGTAAAGTCTTcctgttgttttgttttatataaatttatccAGTGAAAAGGTTTcgttcatttatttttctttcttaaaagaGCTTGCAGAATTCTAACATTTAATTATCCATTGTAATTTATAAACGCTCAGAAGAAACGATATATATAATTACATCAAAAACATGACTACCAACCTAACCATCCCACTTGCAGCATTTCCTTGAGCAGTAtctcttttttcataataCTTTGCATACCCAGATTGACCTTTATATAACTTATCATCTTCTTCgcctttcttttctttatttaccttGAGTTGTTTTTCATAGACTGCCTGTGCATCACGATCAAACTGTgtttcaatttctaaaaatgatgTAGCACCCATGTCGTCAGGGCCTTCTCGTTTACCTGTCCTTGAAGAATCATAAGTTacagaaatactttttttacTTCGCACGCTGTCGTTTCCGTTTTCTACATTTTGGTCTTCTGAGTCACTGTCCCTGTTTGAAGATGGCGCTTTTGCTTTATCCGGATTTAGGCCAACTTTTCCAGGATAACTGCTATTTCCAAgaactttatattttcttccCACTCGTTCAACCTTTTTGACAGCCGAAACATCATCTTCGTCGCTTTCCGAGCTTTCATTCTTCCTTTTCCGATTAACaatgattttctttctctttttgaaaGAGCTAAACCCTGTCTGTGGGCTTTCACTGTCGGCCATATTGAAATGCCCTAATTTTGCGCAAGCGCACTATTATACTCGGATTAACATGAAGTAGCgctgcaatttttgtttttcactcTGTGTTGTGTGTTGTTAACATGTTGTCTCGTctattttgttatatatttttgttataagtaTTTTATTCCTTATAttagtttgaattttttccctTTATTGTCTTGTTGTCTCtgtatttatcttttgtattTAGTTTCAATTTCTCATTAGATACACTTGTTCTTATTTGATTAGGCCACAATTTAGGCCTAAGATGATGAGAAAAGTATGGCGAACTTTGTGATGAGCCATCCAAAACATGGGAAATGATGAGAAACTATGTGTCTGATCATATATGATTACATGCATTGCGAAACTCTGATCCCTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787 all species →	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45850 all species →	SORTING NEXIN FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17920	SNX5_6_32; sorting nexin-5/6/32	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.