Gene detail

Detailed information of XP_065067006.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_5:8616234...8629018
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065210934.1

gcttattcgaggatttaccGTACTGTACAGATAAGGTGTCTTCGCTTCTGTAATTTTGCCTGGTTTCCATTTTTAAAGTGAATTGCACGGATCATTTTAGAGtttagaatatattttctgtgtATGACATAGAATGCAGTCTGGAGCTCCGGAACTTTCTATTGTGACAAGAGTGTTGCCATCCGAGAATAAGGCCCCAGAACAGCTCTTGCTTGAGAGGAGAGGGCCTTCACTCTCCCTCTCACTTCATGTTTTAAGCTGCTCTggcctttttatttttcagcacTCATACACAGTGGCGGATTAACCAATACCAGGATCAAGGGCCTTAGGTATTTTAGGGCCAATTTTTGccaagaaaaatgatattacATAATAACAAAGCTTTAACACCATTAACATATACTGCAAAAACTTGAAGCAGCAAGTTTAGATGTATGGCAATTacaaattaagataaaatgtaactacaaaaatgtcaaacaatATGTTTCCACCATAACATGCCTTGTAtcaacatctttattttaagctgcaaagttaaaaaataattttatgaattgGAAGCAATTTCTCAGCTCGATGTTGAGAAGAGACAGGCTACCCAGTCATGGCTGACCTATAGTTTTTGCTgttcttttctcaaaatgcTTAGCAAAATCAACCATAATGAGCTTTGTATTGTGACATATCTTTGGAAAACTGCTCTTTTGGTGACTTTGAGCTGTTTCTCTATTTGCTGACTGaatgtaattttttacttGCTTTGCAGACTGAGATTTggccaggggggggggggtactaCACCCCTAGCACCTTCAAAGTAGCTATGGCCCTGCATGATATTGCATATTAGAATGGAACTAAAGCAGAAGataaattcttatttcttcaaagtcaAGTGTCACAATCACACTTCCTTTCTTGGCAATCCTGGAAGTGACTTTTTCCTATTTATCTAAGCACAACTTCATTCTTAtctcattttcaactttgtcAAGATAGAAGTCTCAGCAGTTCCTTCAGCTCCTTCTAGTGTTGTGTTTTGTGCAAAAGTGCTATCAATATCATCAGTTATAGGAGGTAGAACAGTTTAAGTTTCTTATGTTTCAATCACTTCTATTTCCTGAGGCTGGATGAACAATCTCAATCTGTTTTTGGTTGTTTGACTTCCACTTTTCTTGATTATTTGcatatctgaaatttttgcacCAGCCGGAATGGATTATAAGGTATTAATGGATTAATGGATTATAAGGTGTTCCAATCACTTcataaggaattttttatacCTATCAACCATTTCtttaattacatttttcattatgtCCCTTTCTTAAACCTTATGTCAAACATGgctttgaaattaaagtacCTCTACCTTTCACTTCTTTACTTTTGCCTACTTTGTATAAATGTATGCTTCCTAGTATGATCTATTCTAACTTTGGTTTTCTTCCAATTTGAAGCTGTTCATATTTGAGATACAGTTCACACTGACAAAAGGGGTGTTGTACCAAGCCAAATTCAACCTTGCCAGATTATTATCAACATCAGATATTAATATTTCCAGAATGAAGTTTTATCagcagaaaacatttataacTTGGTCTATGAGCAATGGTTGATGTCCGATCTGCGTGTTATCAGTGAAGCGTCTTTACCAAACAGTCTCTCATCACTGGAAGGAGAAAAAACATTGAGCGGCGTTTACAAACTACagGTCAATGTTGCGATCAATAGTAGTACTTCTATGTATTCTCAGATGAGAAAAATCGAAAGACTAGAAGGAGATGAAGATGTGTTAAgggaaaaaattaatcaagaagaaaaaatttgcagtgaTGGGAAACAGACTGAGttGAGACAAACATCCAGAATGCTATTCTTTGAATTAACTGATGGGTTGCAAGTCGTCAATGCGATTGAATACAGCTACTTACCATTTTTCAACGACAATATTACCCCTGGTTTAAAGATAGAGCTGAAAGGGCCAGTCGTCTGCAGAGATGGCCTATTGCTTCTCTGTCCTGAAAACATTCACATTCTTGGAGGAAGTGCAGAAGATCTTAGACACGAATAcgatttaatgaaaatttttcaaaatatgttGTCCTCCAATGAAAGAATGCTTGGAGATCAGGTTCGTAAGGGGAACAATAGAAAGCCTGATACAGCCTCTTTGGATATCGAACACCCTTCTGCACTGAAACAAGAACGTTTACGCAAAGaacaaaattttctcgATGTTAATTCCAAATGTGCTTATCCTGACGATGACGTCATCTTGGATATGGAGGATGATTTCATATTCGATGCAGAAATCGGCCCAGCTAATGTTATTGAAGCTGTTTTTCCAGAAGACGAAGCGGCCTCTGATGCAGTCTGTTTGGAGGCCATAGATTCTATTGTTGGTCCGTCTACGTCATTAGCTAGCTGTCCTAATCAAAGTCTTAATCAAAGTGCCACCTTGAAGTGTCGCTCAAATTgtCAAAGCAAAACGGAAAGCGAGGAATTGTTTTTGCTAGATTTTATCACAAGAGCATCTATCAAGAAACACTGTATAAAGGCCTACATCGTCACACTGCTTTCGAAACTAGATATACAGAAGACGTCTTCTAGCCTTTCTGTTTGCATCGACGATGGTTCTGCCACCGTGAGTGCACTTCTGTCAAACCAGGTAATTGAAAAGGAGTTAGGCTTCGCATCGTCTTCGATACGGgaaatttcagaaaaatctaCAGGTATACCTGAATCTATGAAAAAGGAGTTAGTTCACTGTCAGCAGCGATTAGCAAATTCTCGATGGAAGATGCATGTTGTTAAAACAGATGCGCAGAAGTTGACTATTACAGACATGACTGAGTGGCCTGCCTTGGAATAGAAATTTGCTGCTGTTGTTCCAATGtcgttatttttctttgtgtatTAAGGAAAACAAGCAAACTTTCGTAAGGTCCTCGTTGCATACCAGAAATTCTGTGAACTATCGACTTAATCTCAGGTCACGTAACTTAAGTCACGTAAGAAGGATTATTAAATGAATTCTGCTATTAGAATTCAGTTAATTGTGTTAGTCAGTTGGCCAAGAATCCTATTCGAAAACAGTTGTAAGTAGAGAATGTCAGTTAGtggtatttcaaaataaagctAGACCCACAGTCCTCTTGATAGAATCAGATGAATACAGTATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16099 all species →	RMI1_C	Recq-mediated genome instability protein 1, C-terminal OB-fold	Family	Interproscan
PF08585 all species →	RMI1_N_C	RMI1, N-terminal OB-fold domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042470 all species →	Homologous_superfamily	RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily	Interproscan
IPR032199 all species →	Domain	RecQ-mediated genome instability protein 1, C-terminal OB-fold domain	Interproscan
IPR013894 all species →	Domain	RecQ mediated genome instability protein 1, OB-fold domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14790 all species →	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0016604 all species →	Cellular Component	nuclear body	Interproscan
GO:0031422 all species →	Cellular Component	RecQ family helicase-topoisomerase III complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065067006.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.