Gene detail

Detailed information of XP_065067652.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_795:13207703...13218705
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065211580.1

TAATTTTGCGGTTCCAGATCCAGATTTATTCCTTTCAAAATGGTCAACTGGGGCAGACATTTTATGACAGGCCGAACTGTACACACATTCCAATGGGTGCATTAGCGGCAAAAGGGCTTGAAATAGTAGAGCAAGTAACGAGGCTAATTAACGCTGCAGTTGTTATTATGAATTCATACGACTGTCTTGCCTACAATGGGCATTGAGAAAGTTCAAGTGGTGTTGCAACgacagaaacaaaactttatgaatttaACATTGGTGGATTGCATACAAAAGCTGCAATTATTGCTGATTATACCTTGGGAATTGATCTAGAAGAAACTTTACCATGACTTCAGCAGCAGATATTGAAATTTGGCATGCTGCAACACAAGCTTATGAAAATGGGCAACTACAAGAGGCAGTTTCACAGTTTTCTTCCATGTCAACAAtctcatcaaaaatatatttcaacaTTGGGATTGTTTATTTAACACAGCAAAAAAACAAGGATGCTCTGGAGaattttgaagaGGCAGTTAAGAAAGATGCCCATTTTGCAGTTGGCTATTATATGAGTGGAATATGTAACTGCAAGGAATCTAGGTATCCTGTTGCAATTGAACAGTTTCAGCAAGCTTTGAAATGTATGCGTGGTAACAAAGTTGTTGATTACAAACAGCTTGGATTGAAGTATCAACTCTATGAGTGCGAGGTGCTCATGAATCATGCTTTTGCGTATTCAAAGCAAGGTGAAGTTGAAAAGGCTCGTGACGCGCTCACGATGGCAATCAAAGTCAAAGTTGAGAAGAAGCACGAAAGTGCAAGCGAAGCATTACAGCTTCTTCAGGCAGGAAAACAATTGGAACTCATCCTGCCACCGAGTAATGCAATTTTTCGCCCATCTGCTCAGGCGGTGAAGAACCTAAAAAAGAAGGACTATTTAGGCCAAGCTAAGgttTTGTATACAGCAGACCCTACTGATAACACTCCTGGGTTTTCTGGTCTGAAATTGGTCCAAGAAGAACGACAGAAATTAATGTCTGATATTTGTCAGCCTAATcgaaagaaaactttaagGCGAGTATCTGCACCAGCCGGGCCAAACGCTGAAATCCTGTCGGCTGgaaaagttcttgaaaataGGCCCCCACAGAAAGCTTTGCCTCCTGCTCCCCAACTACAGGAACgccaaagaaagcaaacatggGCCGGGGTGATGGAGAAACCTATGCCAATGCCACAGCTTCCTGAAGCACCAAAGCGACCGCCACCGAGTTCTCCTTCAATCCCAAAACGCCCTGAGGGTTCTTCGTGGAACGGACAAAAGTCCAAAAATTCCGCTTTTATGGAAAATGGTATAAGTCAGCCACCACGATTTCAAGCACCGAAGAAACCATTGCCAACTGGGCCATTCCAATCTAAAAACgaatataataataatgagGAAACATGCCCGGTGAGCCTAGAAGTACAGTTCAGTTTTTCTGTTAAACTACAATGCAGCGAGGCGACAACGATGAATGAACTAAAAGAACTGATACTGAAGCAATCAGTCCCGGAGAAGCTGGATCttttCTACGTCGACAGTTTGGGAAAACAGAAGAAACTTTCACAGGCTTCTTTCAATCACATTGTCCAAGGCACCATCgataatgcaaaaataatctgTTTTGAAGCTACACCATAAGAGCTGATAGCAGAAGCATTTCCTGGTAGGACATTCATAGTTTAGAATTACTGTAAATTTATATATCCAAGGTACcatatttgagaaaataaaatatttttagatgaGTTGACAGATAGCTTTAACTTAGAAGCTTTTATTATGTATAAATTAGAAGcgctgtttttgttttctgggCACTGAACTATTAAGCAATGCAGTGTAAAATTTGCCAGATATTGCTTTTATGTGAGTATCAAATATGTTTTCCTGTACAGCAGTAATATGAGAATTGTGTTTTTGTAGAGATTGTGTTAGTCATTAATATGTaatgattgataaaaatcatGATATAGTTTGTTAAAGGTGATGATGGTTATGTTagaagatatatatattttgatatatatattttgatttatattgGACTTTTAATA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13174 all species →	TPR_6	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR051864 all species →	Family	NADPH Oxidase Activator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15175 all species →	NEUTROPHIL CYTOSOLIC FACTOR 2, NEUTROPHIL NADPH OXIDASE FACTOR 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016176 all species →	Molecular Function	superoxide-generating NADPH oxidase activator activity	Interproscan
GO:0042554 all species →	Biological Process	superoxide anion generation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08010	NCF2, P67PHOX; neutrophil cytosolic factor 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.