Gene detail

Detailed information of XP_065067941.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_795:14095575...14105812
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065211869.1

ACATTTCGTTTCGTTGACAAAATGGAAGGGGGTATCCATTGGTCAGCAGTGTACTTTTGCAGAAATTGATGTGGTTAAAATCTTCCTATAGCTGTTGACTTGACCGAAGAAAACTTTGGGTAGGCTGCTTAGTAtctatgaaagaaaaaaagtgCGTGAAAAGTGCTGAGTGAAGGATGGAAAGATCAAACAGCAAAATGAACTTCATATCAATAGACACagcattttatgacaaataTGATAAGTCAGCACAAAGTTTCTCATTAAGAAGGtTCTGGAGGAAGATTcctacttttcaaaaatgcacaatttttatgatatttttcgtAATTGTTCCGCTATTATTcttgtttatcaaatataCAACACCGAATATACAAGCCATAGAATTGGACAGGGAACACAAACCACACAAAGAGTCAGATGAAGCCagaagaattttatttccattaaaaaagGGTTTACTACAACCAAAGACATTAAACTTTGAGCCAAAGAAAATACAACTCAAACATGGTCCCCCTAAACTAGCTCCCAGGAATAAGTTAGAGAAAATTAGGCAAATAATGGAATCAAAAATAACTTCTAAGAATCTTGATACAATGTTGAAAACTGAAGCAAATACAGTAAGTTTTAAGAGTGAAGTGGAAGAaggaattttaaagaaagaccTTGCAAAGCATCCAGAGCTTGTAAAGCAAACCAATAGGCAGAAGGAAGTTGTAAAGGCTTTCTTGCATGCATGGAAAGCCTACAAAATATATGCATTTGGACATGATGAATTAAGACCAATTAGTAAAACCTTTAGTGAATGGTTTGCTCTTGGATTGACACTAATTGACTCGCTTGATACAATGTGGCTGATGAATTTAAAGGAGGAGTATAAGGAGGCTAGGGACTGGGTGGCAAATGAACTACGATTTGACAGAGCTGGTGatgtaaatttgtttgaatcaACAATCAGGATCCTTGGTGGATTACTTAGCATATATCATCTTTCTGGGGATTCCATGTATCTTCAGAAAGCTaaagaaCTTGGTGATCGACTGCTGAAAGGTGGCTTTTCTAGTGGTTCCAAAATACCATTTTCTGATGTTAACTTGATGACACAAACAGGCCATTCCCCTCAGTGGAGTCAATTTAGTTCATTGTCTGAAGTATCCACAATTCAGCTAGAGTTTAAAGATCTCAGCAAAGCTACAGGGAATAAAGCCTATGGGGAGGCAGTTGATTCTGTTATGGATCACATTTTTTCACTACCAATGAAAGACAATTTAGCTCCGATTTTCATCAGTCCAATGAATGGACAGTTTATGAGTGGAGCAACAATAACCTTAGGAGCTAGGGGTGATAGCTACTATGAGTATTTACTGAAGCAATGGATCCAATCAGGCAAGAAGGAAAATAAGTTCAAAGACAATTATGTTAATGCTGTCAACGGCATCTTTGAAAAGCTTGTTAAACATGCAAAACCAGATGGTTTGGTGTTTGTTGGTGAAATTCTTAATGGCTTGACATTCAGTCCAAAAATGGAccatcttgtttgttttcttcctGGAGTTCTGGCATTGGGCTTTCACAATGGGCTAGATGTAAAGCATATGAATTTGGCAAAAGAACTCCTTGAAACATGCAACAGAATGTATACAGATATGCCAACTGGTCTTAGTCCTGAGATTGTATATTTCAACATGGATAACAGCGGAAGCAAAGATATAACTGTGAAGccaGCAGATACTCACAACCTTTTACGGCCAGAAACAGTTGAGTCAATGTTTGTTTTACACAGTCTTACTGgtgacaaaaaatatcaagatcAAGGATGGAAAATCTTCCAAGCATTTGAAAAGTATACTAAGATCAAAGATGGAGGGTACTCAAGcataaacaatgttttaagCCCACATTCACCTGACTACAAAGACAAAATGGAATCATTCTTTTTAGGAGAAACCCTGaagtatttgtttttattatttggaGATGAGAACCAAGTCTCATTGGATGACTATGTATTCAATACTGAAGCACATCCACTCCCTATTTGGAAGTAAGAAAATTGTAGgtgtattttattgtaataacaatatttttgaaagcgATGCTGCTCCAAATcacaaataacaattttaaattgtctgcaaaaaactaaatttataGGACTGAAAGCAACTTATCTTCAAACTTAATAATCAGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01532 all species →	Glyco_hydro_47	Glycosyl hydrolase family 47	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR001382 all species →	Family	Glycoside hydrolase family 47	Interproscan
IPR050749 all species →	Family	Glycosyl Hydrolase Family 47	Interproscan
IPR036026 all species →	Homologous_superfamily	Seven-hairpin glycosidases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11742 all species →	MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004571 all species →	Molecular Function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:1904382 all species →	Biological Process	mannose trimming involved in glycoprotein ERAD pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23741	MAN1B, MNS3; endoplasmic reticulum Man9GlcNAc2 1,2-alpha-mannosidase	EC:3.2.1.209	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.