Gene detail

Detailed information of XP_065068181.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_10:7371752...7379883
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065212109.1

TGAAAGCTGAAAAGTTTTCTGGACTTTGAAGAGGCTGCTACGTTGCCGATAAATAGGAGAGTTATATTGCCTATCTATTGCTTCTTGAAGACGgatctttttacttttcaatcTTTAACTAGATTCAAATGCCCATGAGATGGGTTACTGTCGTGCCTAACTGGATTGCGAGACTTATGACTTGTGTTTTTGTGGCAGCCATCTTGGCCTATCCAGGAGGAAGAAATTAAATCAATCTGTAGTTTTCTAGTTTTTGGATATTATCATCGCCATATCATCAAAAGCATAGCTGGAAACTCGTACGTATCTAAAAAGTTAAAGACAAGGCTTCAGGTGACGTGACTTTGcttgtcaaaaaagaaaaaatgaggTTATTATTGATAACGATGGGGAGTGCTTTACTCACTTCAGCAGCCATTGCCAATGCATTTGTCCAGAAAAGGCAATTCTATCCAGCTGTTGTTTATATTACAAAGTCAAACCCAAGCATGGCGGTTTTGTATATTCAAGCATTTGTTGTGGTAATGCTTTTGGGAAAAATGATGCGGAAAGTGTTCTTTGGACAACTGAGAGCTGCAGAAATGGAGCATCTGATGGAAAGATCATGGTATGCAGTCACAGAAACCTGCTTGGCTTTTACTGTGTTCAGGGATGATTTTAGTCCAAAATTTGTCTCCCTTTTCACActcttattatttttaaaaggattTCATTGGTTGGCTGAGGATAGAATTGATTATATGGAAAGAAGTCCAGTTATCACATTCAAGTTTCACATCAGAGCTATAGCTCTGCTGTTTTTCCTTGGTCTTGCTGATGCAGTGTTGATTCACCATGCCTTCAGGAGTACAGTACAAAATGGTGCAACTGTTCAGCTTGTGTTTGGCTTTGAGTATGCCATTCTGTTGACAATGGTTGTTACCACCATTATGAAGTATGTCCTGCATACAATTGACCTGAACAGGGAGAACCCTTGGGAAAACAAGACTGTATATCTTCTATACACAGAGCTAATTACAGGTTTCTTCAAAACACTTCTTTACGTAGTTTTTGTCATCATCATGATCAAGATCCACACTTTCCCTCTTTTTGCAATACGGCCAATGTACTTAACTTTAAGGGCGTTCAAGAAGTCAGTTTCAGATGTTGTTTTGTCTCGAAGAGCAATTGCATACATGAACAATTACTATCCCGATGCCACAGAAGAGTTGTTATCTCAACATGACAACGTTTGCATCATTTGTCGCGAGGAAATGACCTCTGGCAAAAAACTTCCGTGCAATCACATCTTCCACGCTCACTGCCTGCGATCATGGTTCCAAAGACAACAATCTTGTCCCACGTGCAGAATGGATGTTCTTAGACCTATAGAGCAGcagcaacagcagcaacaacagcaaagaAGGCAGGCTGAAGCGCAAGCTGCACAGCCGCCTCCACCGCAACCTGGGTTCCATCCAAACGTCCCAGGTTTCGTCGGAATGCCGCCGCCTCCGCCATTTCCCATGTGGAATCCTGCTATGCCACAAGCACCAAACCAGCCTCCAGCTCCTCCACCGACTACGGCGGGTTCAACGCCTGCCTCAGCAACTACCACATCTCAAGGACCATCGGCAACAGCTGCTCAGGCTCAAGAAATACCTGGATTTTTACCTCCCCCGCCTTTTATGGCTGGGGCACCTTTCATGCCACCTTTTATGGCAATGCCAGGTATGCCTTCACCGTTGCCACCACAACTTTTCATGAGCCCCCTAGAAAATCTTTCAACGCTTTCAGAAGAAGAGCTCCGTAACATGGAGGGTCAAGAAAGAGCCAATGTCGAAGCCAGGATCAAAGTCTTAAGAAACGTGCATTCATTGCTAGATGCTGCTATTGTCCAATTGAACCAATACTCCCAAGTTATTACAACACTTAACTTACTTTCGAAACCAGAAGAACCAGATTCTAATGTTGCTAGAAAGGAAGAAGATCGACAATCTAATAATTCTGATGCGATGAATGATTTGCTTGAAAACATCGACACAGAGGCATCGAACCAACCTAAAAGTGACGCGGACGTTGATAATAGTTCTGAACTGAGAAGACGACGACTAGAAAGATTTTCCTCACAGAACAGTGAAAATCTCGACGCCAAAGATACAGATGCGTCGGAGACGGGCAAAGCAGGATTAGGTACTAATACCTAGTATGTAATgaattatttatgaatttatttgtttcgATGAGGTACATTAGTAAGCCTATTATCCTTTCTATGTTTTGGTTGCAGGGCTTCAAATAATACCTAACTGACAAATATTTCGTAGTATAACAATTAGATCAGTACGCATGATATCCTTTTGATATGCTATTAAATGAAGGGATGAAGTGctttagatttcaaaaaattattatctttatGTGTAGCAGTATGTGCAATACAGAACaatgaaattatgaaagattgaaaa

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005817 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050731 all species →	Family	HRD1 family E3 ubiquitin-protein ligases	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22763 all species →	RING ZINC FINGER PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for XP_065068181.1 in Rhopilema esculentum.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10601	SYVN1, HRD1; E3 ubiquitin-protein ligase synoviolin	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.