Gene detail

Detailed information of XP_065068617.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_795:7947110...7972217
NR annotation: no NCBI-NR hit recorded
Species abbreviation RESCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135693950

ATGTCGACAAACAAAACCAACAGCACCACGCCACCACAACCCGCCAAAAAAGGACGAAACACAAACCAACTTCAGTATCTTTTGAAAACGATCATGCGACAAGTTTGGAGGCACTCTTATGCCTGGCCATTTCACAGTCCCGTGGACGTGGTCAAGTTGAATCTACCGGATTATTATGATATTATCAAACAACCAATGGATTTAGGAACAATTAAGAAAAAGCTTGAAAATCTTGAGTACAACAATGCTAAAGAATGTATTGAAGATTTCAACAGGATATTTCAAAACTGTTATACATATAATAAACCAGGCGAGGATGTTGTTCTTATGGCACAAGAACTCCAGAAATTTTTTCAAGATAAAGTTATGTCCATGCCTCCTGAGGAAGTTGAGTTGCCTTCCAAAAGTTCTCGCCCACAACTGAAACCAGCAACCTCCACTCAAGATGGAGCTCCGCCTACAAAGAGAAGTCGAAGGGGTGGAAAAATTAAATCTACTGCTGCAGATACAACCCAACCGGCCCTAGTATCTGCACCAGTTACTACACAAGTACCTGAAACTGTTGGGTCTACGAATGCACAAGTGACAAGTCCATCAAATGTAAACGCTAATGCAGTCACCAGCACAACGATTGCACCAATGTCTGCCGATACTCCTGCAAACCCAATTGTTATGCAAACCAAGGTTAAATCCGGGGTGAAAAGGAAAAAGGCAGACACAACTACACCAAGTTCTACAGTGAATGACATCCCTGCATCTCCAGTGACTCCAATCGAGCTTGCTGCACCATATCTTTCTGGAAAAGTAAGATCAAGAAGAGAGTCTCACCGCAGTATAAAGAAGCCAAACAAAGATTTGCCTGGTGAAGATCTCGCAAAGCCCCAACAAAGCAAGAAGCGATCAAAACTCAGCGAGCAGATGAAGTACTGCAATGGAATTCTTAAGGAACTTTTTTCTAAAAAGCATATGTCCTACGCGTGGCCTTTTTACAAGCCAGTTGACGTCCAAGGGCTGGGACTGCACGATTACCTCGATATAATAAAGCACCCAATGGATCTGGGAACTGCTAGGAAAAAGATGGATAGCAGAGAATACAAAAATGTGCTGGAGTTTGCCAGCGATGTTAGATTAGTTTTCGCAAACTGTTACAAATACAATCCACCCGATCATGATGTTGTCGGTATGGCAAGGAAATTACAGGAAGTATTTGAATACCGTTTCGCAAAAATGCCAGACGAGCCTATACCTGAACCGGAACAAAAGCCGGTCACTAAAGGAACTGACGATGCGGACACACATGCAGAGTCGGAATCGGAATCGGAAGAACAACAAAGCTCGTCATCCTCAGACAGCGAAGACGAAGAGAAGAAGAAATTGCTACAGTTGGAATATGAGCTTATTCGTGTACACGATGCTCTGTCAAAGCTAACTTCACAACGGAAACAGAGGAAGAAGAAAAGCAAAAAGGACAGCAAAGACAAACGTAGAGACAAAGATGGCAAGGAGAAGTCACACAAAGATAAAAGCAAATCTGTTGATGACGAATCGAAGCCAACGTTAACAAAGAATGATAAACAGAAGTTGGAAGGTCAGACAAAGAAAAAAGACGATTTACCTATTATTGAATCAAAAACATCGGGGAAGTCGGAGAATGAAAAGAAGAAATCAAAGTCACCAGCAAAGAGCGAAGGGACCAAGAAAAAACCAGCGGCAGGGCGGTCCAAAAAGCCCAAGCCTGTCGAGAAGGAAGTTGTTGCCGAGGAGAGTAAGGACGACGTTGCTGCTGCCCGGGCAATGACGTATGACGAGAAGAGGCAACTCAGCTTGGATATAAACAAACTGCCAGGCGATAAGCTCGGCAAAGTTGTCCATATCATACAAACACGCGAGCCGACACTCAAAGGAACAAATCCAGATGAAATAGAAATCGACTTTGAAACGCTGAAGCCGGCAACGTTGCGTGAGTTGGAAAAATACGTTAACTCGTGCATGCGCAAAAAGTCGAAACCTCCAGCGAAGAAACCGAAAACGGCGGAGGACAGAGAAGCAGAACAGGCTAGAAAGAAAGAAGAGCTTGAGAAACGACTGCAGGATGTCAGTGGAAAATTACAAGCTGCGCAGCCTAAAAAGAAGTCAAATAAAAGAGATTCGCAGCAACTTGGTCCGAAATCGTCCCGACTGAGCGCAAGTAGCAGCAGCAGTGACAGTGACTCTAGCAGCTCATCCTCGAGCTCAAGTTCAGAATCAAGCTCAGACTCTGAAAGTTCTGATAACGAAACAGGTAAAGTTGCTACTGTGAAGGCGCACAAGACACCAAACAGTACTTCAAAGGCCAGCATTACAGCAGAGAAAAAGACAAAGGTATCGGCAGCAGCCAAGACGCAAGTGCCTATTGACGCCAACCCACCCGTCATATCAAGAGGACTATCAGTGGATCAAGCGAAAAAGCCAACAGCCTCGTCAGCCGTCAGTCGTCAAATCTCTGCTCCGTCGCCTATTGTAACTGCAAAACAGCCACCAGTTCCAGAGCAACACAAAGTGTCAAGTCGACCACAGAGCTTAGCAATACATGAAACTACAAAGTCAGTCACCTCGCAACAAAAGCTAACCGTTACTACAGTGAAATCAACCGGCGTCAAGAAAACGAATCCGTCGGTTTCTTCTCCTGCGGTTACCAATCCTTCAGTTTCCTTGACTCCAAAGGCGCCATCTATAACGAGTCCCATTGCTAAGCCGGTTTTGAATGTCTCAAGCAATGCTGTTGCTAAACAGCCTGTCACGCCGGCACCTGGGACTCCAATTTTGTCACCCCCTGTTGCAAACCAGTCGCATGCAGCCGCAAAGACACCAGCCCCACCTGTAAAATCTTCAGCTCCAACCGTAAAATCATCAGTCCCAAATGTAAAGTCTTCGGCCACGACTGTGACTGGAAAGGCCCCGACCCCAGTCTCAAAACCCCCGACCCCAATCTCTAAACCCGCGACCCCAGTCTCTAAACCCACGACCCCAGTCGCAAAACCTGCGACCCCCGTCTTAAAGCCAGCGACGCCTATTGCTTCTGCAAATAAATCTACGACGAACGACACAACTAAGACGGCAAAAGTGGTGACCTCGAAGTCTGACTCTGTCAAGACACCGCAGTCACCGTTTCAAGTCAATGTTAAAAGCAGCGCGTCTACGAATGCTGCTGGTACACCGACTGTGACTTCTGCAGCAGGTTTAAATAGTGCAGCAGGTTTAAATAGTGCACCATCAAAAGACAAGATTTCGTTTGGAATGGCTGATGATAAGCTTATCCCAGCGAATGTTGCTCCTAGTAAAAAACCAGACAATAAGCAAGAGGCAACACAAGTCAAAAAGGAGAATCCGTTGAAGCATGTGAGCTCGTGGGGAAGTCTCGCCAGCACAAACCAAACAAAACCAACAACAAAAATCACAACCAGTGCTCACTTTGAACAGTATCAAAAATTGGCAAGGGAGAAAGAAGAAAAGGAAAGAGCTCTGAAACAGCAAGAAGAACAGTTGCGACAACAAAGGGAACGAGCTGAGCAAGACCGAATCAGACTTGCTGAAGAAAGAAAAATGGAAAAGGAAGAGGAAGAAGCTCTTGAAAAAGCAAGAAAGCAACAAGCAGAACTGTCTGCTAAATCAGAGCAAGCGAAAACAGAAGCTCAGAAAAACAGAGAGAGGGAGATCGAAAGAAGAAAAGAACAAGAGCGGCGAAAACGTGAAGCGCAAGCACGAACTGTTGACATGAACATGCAAAGTGACATAATGAGCTCGTTTGAGGAAATGATGTGA

Transcript

rna-XM_065212545.1

CAAACAGGAAGAGACCAGCACCTGAAgatcaatgaaatttgataatcgTATGGAAGAgtgctttgaattttcaacaaagcttTCCAAACACGCCTCGCCAActatttgctcatttttctgGACTGGCCTAGCCAACCCGAAGAAAACAGATCACCGCTTTTTTGCTCATGGATCTAGCGAAAAGTCCATTTCAGATAGTTGTAAAGTGGCGTTCACGAGAGAATTCGTTGCAATTAGTAGTAGAGAATTCTTTGCAGGAACTCAGGAATGTCgaagatattttctctttgacgTGGAAAGTTTATAGAACTCTTGAAGCCCTCCCTATacataatatatttatctatagAGTGAGAGAACtttattaagataaaatgaaagactTTAGAGAATGGGATAAGATGATTTCATATGTCATAATTTGCACTTTTAATGATTGGGCTTGTTTGCTATATATGATAAGAGGCTTCGTCCATCGTTAtccatttttgacaaacttgGTGAATATATGTAAATTTGTGTTGTTTATTATTGGTAATATTTATTGCAGGAATTTCACTCAAATCTTGCAACACTCAGTAAGCTTATGTCTTGGTGTAACCAGCTAGAGGAATTTATTGAGGTCTTCTGTTTGGCAAGAAATCGAAACCACAGCGAAATTTTGGGAAAAGTCAAAGGCGTTGCCAGAAAAATATGGGACCACGCCCATATTGGAACCcactcaaatttttgtctagatCCGCCACTGACGGAGATCAAGCTTCTTGTATCACTCCAAAACTCTTACGCCTTTAGCAATACTATCTTTTTCCAATAAACAGTTGATAAAATTCTGGCATGTAAAACCCTAGAGGAGAACCAAAATTCAACTAATGGCATTTAACAGATACACATAGCGACACGGTATGTATGGTTTATTTGTAATGAATATCATAcaggaaaaatttatattgttgAAAACCTTTTGGCGAAGTGAGACCGTTTACGAAAGTTAGTTTGTTACTCATGTTCCGGGATCTCTGAATCACGTTACGTGTAAATTGCGCAATCCCGCCTTCGCGGGGGGCAACTGCGTGTCTTGAAAGGGAACGGTAGTGGCGCATTCCGCCATGGAAGACTGCCACGACTTGTAGAGCGAAGCAAAGGTGCAAATCCTTTCAATCTCAGGGTTCTGCAGCCTGAAAGATATCGCGAATAACCGAGAATGCTACAGGAAGCGCCCAAATAGGggTAACTACTAAATAGCGTGAGTTCACATGAATTTACCACGACACTAAAGGCCGCCTAAACAGCGAAGGAATTCAGTTCTACCTTATGGATCTATGACTTTGATATAGGTCACCACCGGTGACTTCGCCTACAAATTAACATAACCACtggaaattttatgtttgatGACACGAAGAAGATCttatttaattgattttctaACGATATAACTCCATCATGTCGACAAACAAAACCAACAGCACCACGCCACCACAACCCGCCAAAAAAGGACGAAACACAAACCAACTTCAGTATCTTTTGAAAACGATCATGCGACAAGTTTGGAGGCACTCTTATGCCTGGCCATTTCACAGTCCCGTGGACGTGGTCAAGTTGAATCTACCGGATTATTATGATATTATCAAACAACCAATGGATTTAGGaacaattaagaaaaagcttgaaaatctTGAGTACAACAATGCTAAAGAATGTATTGAAGATTTCAACAGgatatttcaaaactgttaTACATATAATAAACCAGGCGAGGATGTTGTTCTTATGGCACAAGAActccagaaattttttcaagataaagtTATGTCCATGCCTCCTGAGgAAGTTGAGTTGCCTTCCAAAAGTTCTCGCCCACAACTGAAACCAGCAACCTCCACTCAAGATGGAGCTCCGCCTACAAAGAGAAGTCGAAGGGgtggaaaaattaaatctaCTGCTGCAGATACAACCCAACCGGCCCTAGTATCTGCACCAGTTACTACACAAGTACCTGAAACTGTTGGGTCTACGAATGCACAAGTGACAAGTCCATCAAATGTAAACGCTAATGCAGTCACCAGCACAACGATTGCACCAATGTCTGCCGATACTCCTGCAAACCCAATTGTTATGCAAACCAAGgTTAAATCCGGGGtgaaaaggaaaaaggcaGACACAACTACACCAAGTTCTACAGTGAATGACATCCCTGCATCTCCAGTGACTCCAATCGAGCTTGCTGCACCATATCTTTCTGGAAAAGTAAGATCAAGAAGAGAGTCTCACCGCAGTATAAAGAAGCCAAACAAAGATTTGCCTGGTGAAGATCTCGCAAAGccCCAACAAAGCAAGAAGCGATCAAAACTCAGCGAGCAGATGAAGTACTGCAATGGAATTCTTAAGgaacttttttctaaaaagcatATGTCCTACGCGTGGCCTTTTTACAAGCCAGTTGACGTCCAAGGGCTGGGACTGCACGATTACCTCGATATAATAAAGCACCCAATGGATCTGGGAACTGCTAGGaaaaagatgGATAGCAGAGAATACAAAAATGTGCTGGAGTTTGCCAGCGATGTTAGATTAGTTTTCGCAAACTGTTACAAATACAATCCACCCGATCATGATGTTGTCGGTATGGCAAGGAAATTACAGGAAGTATTTGAATACCGTTTCGCAAAAATGCCAGACGAGCCTATACCTGAACCGGAACAAAAGCCGGTCACTAAAGGAACTGACGATGCGGACACACATGCAGAGTCGGAATCGGAATCGGAAGAACAACAAAGCTCGTCATCCTCAGACAGCGAAGACgaagagaagaagaaattgCTACAGTTGGAATATGAGcttATTCGTGTACACGATGCTCTGTCAAAGCTAACTTCACAACGGAAacagaggaagaagaaaagcaaaaaggacAGCAAAGACAAACGTAGAGACAAAGATGGCAAGGAGAAGTCACACAAAGATAAAAGCAAATCTGTTGATGACGAATCGAAGCCAACGTTAACAAAGAATGATAAACAGAAGTTGGAAGGtcagacaaagaaaaaagacgaTTTACCTATTATTGAATCAAAAACATCGGGGAAGTCGgagaatgaaaagaagaaatcaaaGTCACCAGCAAAGAGCGAAGGGACCAAGAAAAAACCAGCGGCAGGGCGGTCCAAAAAGCCCAAGCCTGTCGAGAAGGAAGTTGTTGCCGAGGAGAGTAAGGACGACGTTGCTGCTGCCCGGGCAATGACGTATGACGAGAAGAGGCAACTCAGCTTGGATATAAACAAACTGCCAGGCGATAAGCTCGGCAAAGTTGTCCATATCATACAAACACGCGAGCCGACACTCAAAGGAACAAATCCAGATGAAATAGAAATCGACTTTGAAACGCTGAAGCCGGCAACGTTGCGTGAGTTGGAAAAATACGTTAACTCGTGCATGCGCAAAAAGTCGAAACCTCCAGCGAAGAAACCGAAAACGGCGGAGGACAGAGAAGCAGAACAGgctagaaagaaagaagagctTGAGAAACGACTGCAGGATGTCAGTGGAAAATTACAAGCTGCGCAGCCTAAAAAGAAGTCAAATAAAAGAGATTCGCAGCAACTTGGTCCGAAATCGTCCCGACTGAGCGCAAGTAGCAGCAGCAGTGACAGTGACTCTAGCAGCTCATCCTCGAGCTCAAGTTCAGAATCAAGCTCAGACTCTGAAAGTTCTGATAACGAAACAGGTAAAGTTGCTACTGTGAAGGCGCACAAGACACCAAACAGTACTTCAAAGGCCAGCATTACAGCAGAGAAAAAGACAAAGGTATCGGCAGCAGCCAAGACGCAAGTGCCTATTGACGCCAACCCACCCGTCATATCAAGAGGACTATCAGTGGATCAAGCGAAAAAGCCAACAGCCTCGTCAGCCGTCAGTCGTCAAATCTCTGCTCCGTCGCCTATTGTAACTGCAAAACAGCCACCAGTTCCAGAGCAACACAAAGTGTCAAGTCGACCACAGAGCTTAGCAATACATGAAACTACAAAGTCAGTCACCTCGCAACAAAAGCTAACCGTTACTACAGTGAAATCAACCGGCGTCAAGAAAACGAATCCGTCGGTTTCTTCTCCTGCGGTTACCAATCCTTCAGTTTCCTTGACTCCAAAGGCGCCATCTATAACGAGTCCCATTGCTAAGCCGGTTTTGAATGTCTCAAGCAATGCTGTTGCTAAACAGCCTGTCACGCCGGCACCTGGGACTCCAATTTTGTCACCCCCTGTTGCAAACCAGTCGCATGCAGCCGCAAAGACACCAGCCCCACCTGTAAAATCTTCAGCTCCAACCGTAAAATCATCAGTCCCAAATGTAAAGTCTTCGGCCACGACTGTGACTGGAAAGGCCCCGACCCCAGTCTCAAAACCCCCGACCCCAATCTCTAAACCCGCGACCCCAGTCTCTAAACCCACGACCCCAGTCGCAAAACCTGCGACCCCCGTCTTAAAGCCAGCGACGCCTATTGCTTCTGCAAATAAATCTACGACGAACGACACAACTAAGACGGCAAAAGTGGTGACCTCGAAGTCTGACTCTGTCAAGACACCGCAGTCACCGTTTCAAGTCAATGTTAAAAGCAGCGCGTCTACGAATGCTGCTGGTACACCGACTGTGACTTCTGCAGCAGGTTTAAATAGTGCAGCAGGTTTAAATAGTGCACCATCAAAAGACAAGATTTCGTTTGGAATGGCTGATGATAAGCTTATCCCAGCGAATGTTGCTCCTAGTAAAAAACCAGACAATAAGCAAGAGGCAACACAAGTCAAAAAGGAGAATCCGTTGAAGCATGTGAGCTCGTGGGGAAGTCTCGCCAGCACAAACCAAACAAAaccaacaacaaaaatcacaacCAGTGCTCACTTTGAACAgtatcaaaaattggcaagggagaaagaagaaaagGAAAGAGCTCTGAAACAGCAAGAAGAACAGTTGCGACAACAAAGGGAACGAGCTGAGCAAGACCGAATCAGACTTgctgaagaaagaaaaatGGAaaaggaagaggaagaagctcttgaaaaagcaagaaagcaaCAAGCAGAACTGTCTGCTAAATCAGAGCAAGCGAAAACAGAAGCTCAGAAAAACAGAGAGAGGGAGAtcgaaagaagaaaagaacaagagCGGCGAAAACGTGAAGCGCAAGCACGAACTGTTGACATGAACATGCAAAGTGACATAATGAGCTCGTTTGAGGAAATgatgtgaaaatttgaagccaCTGTCCAGTAAGGCAATTCGATGCAGCAGACCACAGAGTCGTATGAGGCCACAGTGTCTTATGTTAAATTACATCGAGACTATCTTGCACATTTAGTGTAAATTTGACTGTATGCCGTTCATatttttgattgtttcttACTTTGTGCATCGATACTAAGGTAGTTAATCGTATGCTAGCTAAATTTGCATATGGAAGTAAGTTTATAATGTCAAAAGATGCGAGGTCAAAAGTCGCACGGTCACAAGTCGCAAAGTCAAAAGTCGCAAGGTCAAAAGTTCAAAGGTAAAAGTCGCAAGGTCAAAAGTTCAAAGGTAAAAGAACGCTAGATTAATTGTTATAAGTGGAAGAAGGATCGAATGTAGTGCAGGGAAATGATGATGAAGATCGTTGTTGTGAGAGATAAATTATCGTTGGTACCTCAGCTTCTAGTTTGGAACTGTCGTTAATGGATTTTCTGCAATCAAGCATTAACGTGTAATTGgctgttttaatgaaaattcgTGTGCTTAATGTGCGTATGTATTATCAGGGCAGACCAGAGTCGTCTTTGCTCTTTATTCTTCGTAAATTAATGATGTTAGTTTCAGATGTTTTTCACTCGGCAGATAGTAACAGACATTCTGTTTATCTCCTTTTCTTATTTCGTATACACATCACACGAGTTTTCTTATTGAGCTCTTTATAATGCTTATTGTTACAGCGTAATATAATGCATTTGTTCGTTCGTTCATTGACGTCAGAACGACATTTTGCCTTAACTCATTACAGGTTTCAGAAGAATCCTGATGAAATTCTTTGCCTCTCACGGGTTAGATAATATTCTGCAATTTCACAGTATTTAGGCGCTAGAGAAGTTAACGAGAAAGTTGAATGCAATTTGACTGCAGCTTTGACATAATGTTTTACATACAGTCAAGTAGTAGTGTGCAAAACAAAGCTTGCTTAGGTTGAAGCCTAATGAAGACTGGCATCAATTTTGTACTCATTTAAAGAACGGGGGTTTCCATCCTGCAAAGCAGTTCATCCCATCTCCCACCAAAGCAGTTACTAAACCAGCCCAAATCTACCGTTACAAGTCCAAGTAGGATTTTAGTACTTTACATGGTCTGCATGAAATGTACCCTGAACAATTAGCGTTACAAAGTATTCAAGATGTAATCGGCAGTAATAAACGTTTAAACTGTGAACAAGTTATCACAGAAACATTAGCCAGtttgttatgattttgaatttaatttgtGACATCTTATTATGCAGATTATGCCATATTTTTAATACATCTTATTCTGTGTGCTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17035 all species →	BET	Bromodomain extra-terminal - transcription regulation	Domain	Interproscan
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF17105 all species →	BRD4_CDT	C-terminal domain of bromodomain protein 4	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043509 all species →	Domain	Brdt, bromodomain, repeat II	Interproscan
IPR043508 all species →	Domain	Brdt, bromodomain, repeat I	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR050935 all species →	Family	Bromodomain-containing chromatin reader	Interproscan
IPR027353 all species →	Domain	NET domain	Interproscan
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan
IPR031354 all species →	Domain	Bromodomain protein 4, C-terminal	Interproscan
IPR038336 all species →	Homologous_superfamily	NET domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22880 all species →	FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0070577 all species →	Molecular Function	lysine-acetylated histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08871	BRD2; bromodomain-containing protein 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.