Gene detail

Detailed information of XP_065068978.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_795:3738346...3753655
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065212906.1

GTTTAAAGAGGGAGGGATATTGGCGTTTTAGACTGAAAAAAGGTGAAATGAGAAGTACACAAAGTTCAACTTGATGCATCCCGTCACTGGTTAGACCTGAAAGTTCAACGCCTCCCTGGTTCATCAAAATGGGAACCCCTGTTAAAGATATAAAGATACCAGATGATGCCCCAACAGAATTCTTGGCTGAGAAGCACTCTGCTTTTATTCACAGCTATGAATCAGAGAAGAATCAATATGAGTATGTCATGACAGAGTATTTGCGCATGGGTGGTGTTTACTGGTGTCTCACCTCAATGGCTTTGCTTCAGAAGCTAGACGAAATGGCAAAGGATGAAATCcttgattttgtaaaatcttgtCAACATTCATGTGGTGGATTTGGAGCAAGTATCAATCATGACCCCCATCTTCTTTATACGCTGAGTGCTGTGCAGATATTGGCTTTGTAtgaagaaatagaaacaattGATATTTCTAAAACTGTTGCTTTTATTGGAGAATTGCAGCAAGAAGACGGCTCTTTTGTCGGAGACAAGTGGGGTGAAAAGGATTCTCGGTTTTCATTTTGTGCCTTAGCTTGCCTGGCCTTGCTTGGAAGGCTTGATGCTATAAATTTGGAGAAAGctgttgattttgttgtttcGTGTATGAATTTCGATGGTGGCTTTGGTTGTGTTCCTGGTTCTGAATCACATGCCGGTCAGGTTTACTGTTGTGTTGGTGCACTAGCTATAGCCAATTGTTTACATCACGTTAATGCAGACCTTCTCGGTTGGTGGCTTTGTGAACGTCAGCTGCCTTCAGGGGGCCTGAATGGAAGGCCTGAGAAACTTCCAGATGTTTGTTACTCTTGGTGGGTGTTGTCTGCTCTCAAAGTGATCGGAAAACTTCACTGGATTGACAAGAAAAAGCTTTGCCGCTTTATTTTGGCATCACAAGACGAAGATGGAGGCATTGCTGATAGACCCGGTGATATGGTCGACCCATTTCATACACTTTTTGGTATCAGCGGACTTTCGTTGCTAGGGTATGATAAGAACAAAATTCTCGATGTAGACCCTGTTTTCTGTCTTCCAGTCCAAACTGTTCGGAAACTAGGAATAAATTCGCAGCttttattttaagttaatCCTTAATGAATATTTACATAAACTTCAAtaatgaatatatataatggatatattttttaaatttttgtcttttctttgaCATGTTTCAATCTTATGTATGTTGGCAGTTAACCATTGAAAATGCAACTGGACTAATTATATCGTTTAAAAGGTCAGGAGCTGTTGGTATTCATCTGAACGGCTCACTCCAACTTTTACATTACTGAGACATTTTCCAAGCCAATCACCATTGCCTTTAGTTGGTGTCGTATTTCATTGGAGGAATTTGGATTTATCGACGCAAATAGGGGAACGACCGATTTATGATATCACGACATATgtttaacattttatatggcagaagcaatttaaaagattttgtgagAACTCGGTAGGTGGAAAAGTGTCTGCTGTGAAgattttttgtcaatctaGGACGTGTTAGTAGAGATGGTGTTGGtttcaaaaaaccaattttttgtcatcctgaaagatttctttttcttacattttcaTAGAAGCTCTCAATGGTGGACAGGTAGAAAATGTAACAATATATTATAACGTCCAATATGTTCTGAATTCTTCTCTAAAACCCtcataaaatacatttcataGAAGGAAAAAGATATTTGTGTTACTGTTGAAAGAACAATACCAAGTAAACTAATTAATAACTAGTTGAAATTAGATATCTTAGATATAATGATGTCTCAAATGTCTTTCATCGATGTACTTTCTCCAAAACAGAGGTAACCTGTACTGTAGAATGTGGCATTCCTTTGCCACCCTTTGATTCACTTATCTTTCGTCAGGTGACCGAAAAACACTGCATTGATAGGCTGATCATCAATTGTTCTCGAGCaatcttgtttctttgtgaTCGTGTGATTGCAAGCATTCCCGTGAAGAAAGGTTTTTAAAGTCTCGATTTAAGTAGACTGTTGTTTTGCTCCACCAATATGAATTattcattttggaaatttggtTCCTTTTCCAACGTGTCCGCCTGTTTTGGTACCATGTTTTCACTTGTTCTGAACttaagcaaatttcttttgctaatttgtttctttgcttaaCACTCAGATACTTTTGAGTTTTGAATGACTCTTCGAGTGAGATTCTTTGTAGGTTAGTAAACTTTTTCCGCCAAACCTTCGaagttttttgacaaattgtGCTATCACTTGTCTCTTCGGGTGTCTGTTTAATCGAAGATATGTCTTCATGTTCTGTTCAAAAGATAACTTTCTGTAAAATGCACTTCAAAACGAAAAAGTTGTTTATCGCAGAAATTTAGGGTAGAGGCTTTTTCTCTACGGAACAAGCCCtgtattctttattttattaaaatatcctgtgaaaattatgttttttttttaaaaacaattcgTACCTTGTAAcggtaaaaatttcttggaatATATGTGTATGTTGGTCCGTCAACTTCAGCATATATCTTAATGACAGGATATAATTGCGCAGAAACAAGATATTTAAAACTCATCCCTCTGCAATGCTACAAAGATGTATTTAGCAAATGAAGATAAATCCTTAATTTGCTAAAAGGGCCAAACAACAGCCAGTTAAAATGAAGTAAAAGGAGAGGCTGtatcaaaattattgataatttttagaattttgacaTATTTGATTGTATGACGTTTTATTTCTGTTGCTTCATTGCATCTTTAAGTGCTCTGGCTGCAAATTAACCTTATTTCATTATGTTCCTGCTTATCTCATATACGATTTCCTTCAAAGTGCCTCTAAAACGTAGCATTCAAACCAGTCTGTTACATGGGATAATTCCACTTTTAAGATCCTTTTGCTACTGCTCCATTGCAGCTGGATCTTTCAGATGTCATGCTTGTTAGTGCGTTTATTACCGTAAAGGATGGCCAGTCAACATTAGTTTTTATATCGTTTCAAAATTGTTACTTACCAATAGTTAAATCAAGCTTTTGCTGCACACATGCTTTTTCCTGTCTTTCAGAATCAGAAATTTCCTTTGAGTTAAGATCTAAAATGTCTTTAATCAAGAATGATTTCATTCTGCTCAAGTCTTGATTCGCAACGCTCAAAGCAGGCGACTGTTCCTTTCAACAGACATTTAGGCTTCCAGGTCATACCTACCATGAGAAGTTGATGATAATTTGATATCCCGCCGATGGACCTTATATCATATAGAATTGCAAGCTTGACCCAAACAATCCACCTTAAATTTTGAAGCGCAAAATGCGCTACACTATTGAGTTGTAGCCTCACTTTGAACAAAAGGCTCCGATCTTAGTCAGTAAACATGTGAAGACTTTGCATGTGataatctgaaatattttgctggCTGTTGTGTTTAATTAGCTGGAAATCTTTGATACTTTGGTAACTTGCCTGTCGACTTCCATGTTTTTGTGCAGTTTATTTCGTTATGTTCTTGCAATGACTAGCATTCTTCAGATCCTGCACATGCTGTCTTTctgttcaaaatgaaatgatggattacttttattcattgtagatttataaagattttatctaactaagaaaaaatggttttttcgCTTTTGACagatttaaataaaatacaacTGAGGACAATCTATTGTCACCGTATTGTAagtttaaacaattttatgataCACATCTTAATCgaaattttacatttctaGTTCTAAATATGGTGAAAATTAATTATAAGAAGGATCATAGCTATATGCAACTCgttcagaatttttttcagtctTGTATTTGTAATAAGTTTGTGGAAAAAAAGCGGTATGCAGAATTGgcttttcaaatgctttaaCATGCTTTTGCACAAAAGCCAAATTTACAAAGATGGTAATCATGTCAAGTTGCAAgtttttcatggaaaatgAAACGTTTTCTATTCAGTTAGCCATGCAGAAACTATACTGGTATCAACTTTTTATGCACTCATTGATAGAAAATCTTTCACTTTCTCATTTTGTTTCGCAAATCATTATTAACTAAGACAAGCAGTTGTTACAAAAAGTTCTTTCGCCCTTTTCACTGCGTTTTTTCTGATAATCAATGTGCAAGAAACTGCAACCAAGTTATTTATGTATTTGCCAAGCATATCTCAGTTTTATAACAAAAGTAATATTTGTAATGCAAAATAAAGCAAGTAATGTTTAGTACTGCATTATTTGTATACCTGTACAAGTTTGCTACAGACAAATTCATTActtaaaaatatgtaaatatagGACCATTAGAATGGTTCCTGCCCATGAAAGACTTTTTCCAAATAGGTGTTAGGAAGGTCAGCCATCTTCAAGTACCATCccaatttttttgtctatGCTTGTAAAACATTCATTACCCATTCCTTTGATAACAGAGAACTATTATCAATAATGGCACGAAACACCTTCACATTTGAGTAAATTAATGATTTGAATCAATACTAACAGATATTGTCCCGATAGCAACAGTCTCTGTGTCTAATATAAGCGTCGATCTAATTTGTGTTGAAGTTGTGATAGGGTGTACACTGAATATGATACGTAATGCTCAATGCCCATATTTCAGACTTGCAAATTCAGGGCGTGTTTTAAAATGTAGGTTTGCTGTTGTCAATATGATGGAATGGTCGTCAGTTAGGGCCATGTCACGCCTGTGTTAAAAACGACTTAATACGTGGTTTGAATCTTGACGTTCTAAATCTTTTCTGGGTTAATATCCATTATCAAATGCTTACGGCACTGAAAGATATTAACGACATATGATCGGTATCCTAGAATACGATAACATCCTTCTACATATATGTCTATGCCAATCTTGACCATACGATTGGTCTTTTCAAGTATCAGTCCTCTGACCTGGTATCTCTTGTCGCCAAAAGCCGAGGCTTCTCTTAAGTGCTATCTGTGAATATAATCATGTATTTTGGTTTCAGATTTGGGTTGTGTTACACCCACGTTTCGATATTTTAAGAATCAATTCGCATGACAATCCACCaatgaaacatgaaacaaaacCTCTTGAATAACGCTAAATTTTTAACAGTTAAATGAAGATTTGTAGAAAATTCACGTGCTGTGGCTCAATATCTATTTAGTCGAAAAGAATACTATCTTCTCTGTTTCATATCAAGTcgaaaaagattaatttttacaaaattccattttttcaagcctattagtaattttgttaattagtttagtttagtttagtgTAGTTAGTTAAGTACCATTTTCTCCCAATTTTTCTTACCGtggttttctgtttttttgtctGCAAGCTTTCTATCAAAGCCAAGATGCATCTTTAActttaatttgaattattaGTCAAACAGAGAGAGCGCTAATCGAATCAACCTGCCAATTTGGAAAAAACCCAAAATACCgtactttatttttatgtgCACAACACAAGCTTTCCACTACGATTAGCTGTGAAAATATTGTTGCTGCCAAAATATGGTTGCAAGCAGATGTTCTCATATAGTTTCAAAGCAGATTTCATTTTCGTGTAAGTTCCATTCAGTTAGGTAAATGTACATAAAAAGTACAGTAAAGTATTGCCATTTTACATCGGACTTCATTTTAGTACTACTGTTGAAAATTTGGTGTTCTTTGATTTGAAAGCACAAACTTAGAGTGGTCCAATTATGTCAGGGTCTAGCTGGCTCTACAGATTATATTGCGACAAGAGAAAGATTATTAGGTGTCTCAAGGACcgatgatgaaatatttttattgagatTTGCATTGTAGCGAGATTTGCAGAATAAATCTTGAAGCTAAATTGGTGCTGGGTAGAAATGTGTTCAGATTCAGAAGGTTGAAGATTCGAAAAAATGCCTAGTCATCTCAGATATGACTGGAAACAGAATCTAATCTCCATTACAAATATCACCATATTAGTAGCTACAATTTATGACAAAAGTCAGTTGAAATCTTTTCTCGTTTTACTGGAAAAACGGTGTTTATACCGACCGTTAGCTGCTTTGCGTAAAGAGGGAAAACAGATCGGTGCTCTTCCCCgtccaaaatttgaaaatagatcTAATATTTTGCCCCAAATCATCAGCTGCTTATTATgatattgatataaatatttagaacAATGCAAAGTTACATTGTGTGTGGcctaagcaaaataaaataagaacagTAATAATGTataaatacaacaaaatgatgtttttgtGGTGGTTTATGACAACATACTCGGTCTTGACGTGTTTTCACGGGCAGACATCTTGGGTATCATACTTATCATACAGTGTTTTTGTTCTGAGTTCAGCTGCttgttgcaagaattttgcaaattttttctgcttgctAATGTCTTGGCAGGACAATagcttgattaaatgaaatttattcacGTTTACTATGTGACAGTGTACGCATTTTAGGCGACCCTGCCCACCCAACCCATGTCTAGATATCTTTAGGGGTTCTTCCTTACATGCATGTTGACTTTCTACTTCTTTTTTTTCGTGCATTAGTTGATGGCCATATGGCTTGCGACTTTTTGCGTGAACAAGGTGCTGCTAGTCGGCGGAAGAAGGCCattgttcttcttctcaacCCCCTCAAAAACGGTTGGGGTTTTATTTATGGCCGTCTTTGCGATTGGCGCACCGACAGcccaaaaataaatggttcAAATGATGAGAGAACACCACCTCCAGTCTTATGATTGACAATGGTAAAACCTTCTGAGGACCATCTTACCCTTATCCTAATGGTTTATGTTTAGTAACCTGGAACAAATACTGAATGTCGATATATGTGTGTTCAATAGGCTTCGGCGTTAGTATACTATTAGGTTAACTCAAGTGGGATCCGTGCTTTCTATACATTCCTTTGTTCTCTGTATTTGTGTTTACATGGCGAGTGGGCCAGCCCGCTCAGGTGAGATCCGTAGCTCAGGTGATTGCAGCGCATGCGTAGCAATAGTCATCTTTTGAAGGCTGATCCATACTAGAATATATGGTTGGGTTGCGAACATGAGgatgagattttcaaaaatagtcTCCTCGATGGGAGGGCAAGTAATCTCTTGCTGCTGTGACATGGAGGTAAAATTCCCATCAAACATCACCTACAGGTGATCGTTTAATGATTGAATTCTACCTCAAGGTCGCATCTTTGAGATCACGTGAGATTTCAAAGTAAAGATATCATGCAAAGAGAAAATGGATCAGCAAAGAGATCACTGAAGGAGAATtgtatttgagaaaaatttagCTAACCAAAAAAGGACACCAAATATAacttttaacaagaaaaaaacaaataatttcaaatagaattaatgttgaaagcaatgaaaatgcaaattgcAAACGTTGATTGTTTATCCAGAAACTcctttttataatatttggCAAAAGTATTTCCGAGGACTAGCCAGCAATTTGTAAAATGACATCTATGTTAACTCCATTATTTAGTGCAGCTGAGGTTGATGCAGCTCTGGTGCTACGAGCCTTACACAATTCAATATCAATCCCTGCTTCTTACATGACTGTTCTTATCCACCTAAATATAGTACTGGTCTGTACTGGCTGGTATGGATATGCAAAACTGATAAAAAGTTGTCGAATCGTAAGGAATGTGCACTTTGTAAATATACCTCCGTGTATGGTCATTTGGAAATGATGGGAAATTAGGTAATTGTTGCTTTACCCCAGGTCTTGACTGCTCAATTAGATCATTTAAGGTAATCTGAAACTTGTGTTTGTTCTCATCGTATAGTCTAGATTTAGCATTTCATTGTCTAGCATCGCTGTTCAGTGACTAAAACACAGAGCATGACTAAGTTCAAAGTCAGCTTTCATAAATCTATTAAATTTGGTGGGCTCCACTCCTTCAAATATGACGAAACATCTGATACATTCCGTGTGGATGAATAACGAGGCCTTTGTGGTCTCGTTTGGTATACTGCTTTAAGCATTCTCCTAACCAGGGGATCCTCCCCAACAGGGACAGTATGGTCATTCAAGGTAAAAACAGCTGATAAAGCAGACCTTGCAGTGTTGATTGTTGAATAACTGCTGCCTGAAAAATGTAAACTTGTTAGAAAATCAAGAACATCTTTGACACAAGGGTTTATGAAGTTGATATTATTGCATATTGCAAACTTGATCCATTTCTCGATATAAAccatatattattttcaagaaatctttCACCATGACTGCATTATTAGCTCAGATACTTGGTGTGATACGTTGAGGTTATTACGTCTTTCCCTGATAAGAGGCATGCCATCATCTTTAGTTTTGGCCACAAGGGGTGCATTTTCTCCTGTTGGTGAGGCAGTAAAAGCAAATCTTTTCTATTAGAAAAATAGATTAAAGTACAAATTAGCATATCATTAAGGACTGGATACCACACTTGTGAGGTCCAGCATGGAGCAATCAGAATTGCTTTGCAGGTATCTGTTTTCACCTTTTGCAATACTTAGAAATCAtagaaaatggcaaaaaagatAGACAAATTTATGTTCCCAACTAAAAGATATTACATCTACTGAAAATGCCTCTGGGTCTAGATACCATGACACAAAAGGCTTAAGTTGATGATTATGCCTagaagcaaacaaataaatatctGGTTTGCCCCATGTTTTACAGATCATGTGGTCTTTTTGTAGACAAC

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006218 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00432 all species →	Prenyltrans	Prenyltransferase and squalene oxidase repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001330 all species →	Repeat	PFTB repeat	Interproscan
IPR026873 all species →	Family	Geranylgeranyl transferase type-2 subunit beta	Interproscan
IPR045089 all species →	Family	Prenyltransferase subunit beta	Interproscan
IPR008930 all species →	Homologous_superfamily	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11774 all species →	GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004663 all species →	Molecular Function	Rab geranylgeranyltransferase activity	Interproscan
GO:0018344 all species →	Biological Process	protein geranylgeranylation	Interproscan
GO:0005968 all species →	Cellular Component	Rab-protein geranylgeranyltransferase complex	Interproscan
GO:0008318 all species →	Molecular Function	protein prenyltransferase activity	Interproscan
GO:0018342 all species →	Biological Process	protein prenylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05956	RABGGTB; geranylgeranyl transferase type-2 subunit beta	EC:2.5.1.60	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.