Gene detail

Detailed information of XP_065068982.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_795:11323873...11338010
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065212910.1

ttgaattgaattgggTTGCGGCATTGTACGGGTTTCGCGTTCTTTTTATCATGGCCGCATCATCTACAGTCGAACAGCAAAATGCGATTGACGCAAACAGTAATTCTATTGGACttgaatttgatgaaaagcTGCAAAGGCAAGATTCACTGAAAGATGAGGATCTGaacattttaaaggaaaagcTTGACATCCTCCCggaaaaaattagaaagaagATCAAGGAGCTTGAAGATGATTTTCAGGAAGGTGATTTGACAGAGAAGGGTTACAAAAGAAGACTAAAGTTATTAGTTGCACCACATTTAGAGAAAATTCAAAGTGTATCAAATGATGCTGTAGTGGAGCTGTATGAGCCAAATTTAAATGCACTACCAAAATTTGCGGTAGAACAACTAGAGGAACTTGAACGTGAACTGAAGGAAGagGAAATCACATTGAAAGGCTACAAACGAAAACgtgaaaaaattcttgctcCTTTTATGCTAAAAGAGCCACCATTTTCTTCACTTCCAAAAGGAATCCAGAACGAACTTAATGAACTTGCACAGGATTTCAAAGACGGTGACCTCACGGAGAAAggtttcaaaaagaaaagaacaaagattATAACGCCCTACCTTGTGAAAGCAAACTCATGGTCGTCATTAGTAAACATCTTGCCAAATAGAAACAGTGTCCTCACAGTTTTTGTACCAAGTcaagagaaacaaaaagatgACAGTGATCAAGCCATTGGGATACAAATCATGAAtggaaatgagaaaattttcaaatgccaGCTCTGCAATGAAGTATTCAAGCAAGCACAAAGCTTTAGTGGCCACTGTAGACTTCACCGTAATAACAAATCAAAAGCATTCAAGTGCACAATATGTAAAGCCACATATACAACTAGAAGTCATCTGAAGTTTCACATGTACAAGCACACAGGTAATTACCCTTTCAACTGTGAATACTGTGGCAAAGGATTTGCAGGCCGTAGCCAATATCGATATCATGCGTTGCGTCATTCTGGGCAATCACCATATATATGCAAAGATTGTGGCGgcagattttggaaaaagagaAACCTTGAAGTTCATTGCTCCAAGCACCGTTGTGATGATGCTCCAGCTGGCCTTCAAAAATGTGCtCATTGTCTGGCCATGTTTGAAGATTTAGAGGATCTGCAAACACATATGTACGAGCATGATGATGAAGTCCAAGAAAATGTTAAAGCAACACAGGCAACTATGGTACAAAGAACACAGAATAAAAATTCTGAGGCAAATAATGACGAATCGATGGAAAGTGAAGAAGAGGAAATtcctgatgatgatgatgatgaagcAAATGATGATGTTGAATCAACAGCAAAAGACTTACCTGGGGAAAACATGGGGTCTGTTGCTGTTGCAGAACcctaaatttttgtaataaaagaTGGGTAGAGCTATTTTAAGATTACATATTACAGGGAAGATCCATATTTAATGTTCATGTTCATAGATATACTGTACATTGCTAGTTTatgccaaatatttttataaagcaaaACTGTTTACTAAAACAATAAGAACCTTTTTGCCTCAGAATCTTCTACGTACAACTACTCAGTTAGTATggaattgttattttttcgcGGCAACATTACAAATCATTCAATTAGTGTTACTTGTGCACACATTATCTGCCTTCTTTCATCTCATTTGTAatgcatataaaaatattcctttCATTCTGCAAAATAATCACTCAACAAGCCTCTCATCTTGCTTCAGACATTTGAGtgcattgaaaattatgtCAGTGAATTGAAGAGTTGACAGATGTGAGTGATGTATGGTGCATTTGTGGTTTCTTTGAAAGTCTTGTTGTATGACTTTGCCTTTTAGCATGgttgctatttttagacaaaGTGTGTTGTCTATTTGTGGAACTTCTTGATCGCCCTAAAAAAACACAGACAATTACAGACAATCTCCAAAGATTGTATATCAACATCAACAATCAATCAATGTACTAATCTCATAACTTCTATTGGTTTTTTGGGTGCAAATTAATTGGAAAACCTAAAGTTCTTGACATTTGAGTTTGCTTACTTTTCTCCAAACTTAAGATGACTATGTTGAATATTCACAATTTAGTATTGAATGATCCCAACTTAGATTTAGAATTgcaagtttcaattttttctagattCTTGTTTTACTGTCTGAATTTAGAAATGAGGCAGCAACATCGATTCAATGATTTGCTTCTATGATGTAGCAAAAAACAGTAAGGGCTTCATGCAGTCCTTTTTTCATAAGTGTAattgtaaaatgaattttccaGTTTCCAGACATTCTTACTAACTTCATGTAAGTATTGAGCCTGTCTTTGTTTTCAGCTTTTCATCTCTGCTTTAGCAGGAAATATTGATACTTTCTACTGTTAGGAACAATGTGGGCTTTTCACAAATTTCCAGTTAGGGTTGAGGGAAATCTAACAAGCACAATATTGAGATGAAAATGAATCTACTCTGAAGTTATGcttggaaaattaaaattaaacttGCAGGTTGTCTCTAATTTGTTGCCAATGtctcaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06464 all species →	DMAP_binding	DMAP1-binding Domain	Domain	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010506 all species →	Domain	DMAP1-binding domain	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR050888 all species →	Family	Zinc Finger C2H2-type Transcription Regulators	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24406 all species →	TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0043035 all species →	Molecular Function	chromatin insulator sequence binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.