Gene detail

Detailed information of XP_065069004.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_10:12555158...12574961
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135694229

ATGTTGGTAGCCCTGTATCCATGTGCAATTGGGAACATGGCGGCATTACAAGTGAAAAAAGCCAAGAAAAAATCTAGCAAATCTGGAAAGAAGAAAAAAAACACTGATAGTGAAGGCGATATTCTAAGGCTGGAAGATGTTCTCGACCTTGGCGGATCAAAAGAAGACTTTGAAATGCTGATGGGCCAGAAAGAAAATGTTGTTGAAAACACTAAAAATGAAACCATTAAGATAGATGAACCACTTTCAGGCAATGAGATACAAGAAATGGTAAAATCTCTTGGTTTGGATCAAATGGCAATGGATGATGTCACAAATGAAAGTGATGTCTCAGAAGATTTGGCGAGTAGCAAAAAAGGCGATGATCCTCAAGTACCAAAAACACCACCATTTCCAGATGATAAGAGAAAAGAAGAAGAAAGCTTTAAAATTGAAAAGATTACATACATCCCTAAATTTGAAAAGCAAAAGAAGTTGCAAGTTCAACCATATGAACTGTGGTATGACCAGCTTCCCAATGTAGCAGCAATAAAAACCGAAGAGCAGTTAAAAGATGCAGCTTATACCAAAGTGTATGAATTGGCAAAACGGTTTTGTGAAGATGAAGTTGCACTTTACCAAGAAACAAAAGGTTTGGAAAAGTCTTCTGATGCAAAATGGTTGCGAACTGTCTTGTCTTCTGGTACTTTGAGTGATCGGGTTGCTGCCATAACTATGCTTCTGCAGGACTCACCAGTTCATCAGATGAGGTGTCTTGAAAGCTTGATTTCTATGGCTAAGAAAAAGGGTAGACGCGAGGCAATCATGGCAATTGATTCTCTGAGAAATCTTTGGACCACAAATCTGTTACCAGATCGAAAGCTGAGATACTTTTGGCAGTGGCCCATTTCAAGATTACGAGAATTTGGAAAAGATATTGGGAAACATGGGGAAGTAAGGTTATTGATTCTATGGTATTATGAGGATTTGCTGAAACAAAAATGTGAAGAGTTTGTCGAGTGTTTACAGAACCTCTCCCGTGACACAATCCCCGGTATTCGCGATAAAACGGTTGGCATCTTATATGAGTTACTTGCTATGAAGCCTGAACAGGAACAGAAGCTTCTAACAGCAATCATTAACAAACTTGGTGACCCGACGCGAAAAGTTGCATCAAGAGTCTGTTATCTTCTCGGTCAATTAGTCGTGAAACATCCCAATATGAAGCTCATTGTTATCCAGGAGGTTGAAAGATTGCTCTACCGGACCAATTTATCTTCCAAAGCCCAATATTATGCAATATGCTTTCTGAATCAAATCATGCTGACAAAGAGTGAAAGTGCAGTCGCCAGTAAACTCATATCCATTTACTTCTCTTTTTTCAAGGCACGTGCTTCTTCAAGTGACGAATCAGATTCAAAGATGCTTAGTGCATTGCTTAGTGGAGTGAACAGAGCATTCCCATTTGTTGAAGACAAAGAAGATCGCTATGATGATCAAATCGACACACTGTTCAAGCTTTGTCACACCAGCAATTTTCAAACAAGCTTACAGGCCTTAATGTTGATATTTCAAGTTATGCAATCGAGGCGATCACTTACCGATCGTTATTATCGCGTTTTATACGAGAAGCTATTTGACATTGGCATCAACACTTCAGCCAAACGGACGATGTTTCTTAACACTATTTACAAATCAATAAAAGCAGATTCGTCACTGAATAGAGTGAAGGCATTTTTCAAAAGATTGTTGCAATCGGGATCAACCGAAGAGCCGAACTTTGTCTGTGGCCTGCTTTTCCTTCTCTCCGAGGTGCTGAAGTTGAAGTCAGGAGTCAAAAGCCTCACTATGCAGCCAGAGGAAGATGACGAAGATGAGCATTTTGAAGATGCCAGTGACGATGCATTTAAAGCACCCAATGAAGACCTTGTAGAACAAAACCAATCGGGAAATGAAAAGATTGATGAAAATTCAGATCAAAAGTCTGGTTGGACCTTCCGTGCTGACTTAAAGAGAAATCATTACGATATCCAATGCCGAAATCCACTTTATAGTGGAGCTCAATTTTCTTGTGCCTGGGAGCTTTCCCCTCTCATTAAGCATTATCACCCTTCCGTGAACCGATTTGCGCAGTTTGTGCTTGACGGTAATCCTATAGAATATAAAGGCGACCCACTTCAGGATTTCACTCTCGCGAGGTTTCTGGACCGTTTCATGTACAAAAATCCTAAAAAGAACCCAAAAGAACATGGAAATTCTATAATGCAGCCAAGAAAGACGTCCGAAAGATTGAAGGAATTGCCAGTGAATTCAAAAGAGTTTATGGACAAGAAGATCACAAAAGTTCGCGAAGACGAAATCTTCTTTTACCAGTATTTCAAAAAGAAAACTGAAATCGAAGATTCTAAGAAAGGGAAAAAGAAAAAGCGAAAGCTTGATGCAGAATTAGACATCGAAGATGAGAATGAAGGAGAAGGAGTGGATCTAGATTTTGCGGGTGAAATGCAGAAGACCAAGGATGCTCAGCCGAAGTCCAAAAAGAGAAAAGCGAGAGGTGAAGATGATGATGATGATGATGATGATGATGACGATGAAAATGAGGATGATTATGGCAACAATGCAGGTGACGATGTCTCAGATGAAGGGGACTTTGATTATGACAATATGCAATTTTCAGAGGATGAAGATTTCGATGAGGATGATTTTGAAAATGAGACAAAACAGGGTAAAAAGAAGAAATTTTCCGATGCAGATTACGAAAAGGCATTACTGGAGAACTTGAGTGATTCAGATATCAACGAAGACCCCGACGAAGCAACATCTACAAGGGATAGCAATATTGGTTCAATGTTTGCTGCTGCTGAAGAGTTTGCCCACTTGCTGGAAGATACTGGAACGTCAAAAGGACAGCAAAAGCAAGCCAAATGGGAAACGAGGAATGTTGACTGGAAAAAAACAAAGGCCGCCAAAGGCAAAGGTGTACAAGGACATAAAAATAGACAAGAAACAAAAAATAAACCTGGGGGTTTTCAAAGAGGCAAGAAAGATGCAGGACACTCATCAAAACAGAAAGGTGGAGGTAGACAGAAATTTAATAGGAACCGTAGAAAGTGA

Transcript

rna-XM_065212932.1

GAAGGAGCAATTTATGTTGGTAGCCCTGTATCCATGTGCAATTGGGAACATGGCGGCATTACAAGTGAAAAAAGCCAAGAAAAAATCTAGCAAATctggaaagaagaaaaaaaacactGATAGTGAAGGCGATATTCTAAGGCTGGAAGATGTTCTCGACCTTGGCGGATCAAAAGAAGACTTTGAAATGCTGATGGgccagaaagaaaatgttgttgaAAACACTAAAAATGAAACCATTAAGATAGATGAACCACTTTCAGGCAATGAGATACAAGAAATGGTAAAATCTCTTGGTTTGGATCAAATGGCAATGGATGATGTCACAAATGAAAGTGATGTcTCAGAAGATTTGGCGAGTAGCAAAAAAGGCGATGATCCTCAAGTACCAAAAACACCACCATTTCCAGATGataagagaaaagaagaagaaagctttaaaattgaaaagattacATACATCcctaaatttgaaaagcaaaagaagTTGCAAGTTCAACCATATGAACTGTGGTATGACCAGCTTCCCAATGTAGCAGCAATAAAAACCGAAGAGCAGTTAAAAGATGCAGCTTATACCAAAGTGTATGAATTGGCAAAACGGTTTTGTGAAGATGAAGTTGCACTTTACCAAGAAACAAAAGGTTTGGAAAAGTCTTCTGATGCAAAATGGTTGCGAACTGTCTTGTCTTCTGGTACTTTGAGTGATCGGGTTGCTGCCATAACTATGCTTCTGCAGGACTCACCAGTTCATCAGATGAGGTGTCTTGAAAGCTTGATTTCTATGGCTAAGAAAAAGGGTAGACGCGAGGCAATCATGGCAATTGatTCTCTGAGAAATCTTTGGACCACAAATCTGTTACCAGATCGAAAGCTGAGATACTTTTGGCAGTGGCCCATTTCAAGATTACGAGAATTTGGAAAAGATATTGGGAAACATGGGGAAGTAAGGTTATTGATTCTATGGTATTATGAGGATTTGCTGAAACAAAAATGTGAAGAGTTTGTCGAGTGTTTACAGaaCCTCTCCCGTGACACAATCCCCGGTATTCGCGATAAAACGGTTGGCATCTTATATGAGTTACTTGCTATGAAGCCTGAACAGGAACAGAAGCTTCTAACAGCAATCATTAACAAACTTGGTGACCCGACGCGAAAAGTTGCATCAAGAGTCTGTTATCTTCTCGGTCAATTagtCGTGAAACATCCCAATATGAAGCTCATTGTTATCCAGGAGGTTGAAAGATTGCTCTACCGGACCAATTTATCTTCCAAAGCCCAatattatGCAATATGCTTTCTGAATCAAATCATGCTGACAAAGAGTGAAAGTGCAGTCGCCAGTAAACTCATATCCATTTACTTCTCTTTTTTCAAGGCACGTGCTTCTTCAAGTGACGAATCAGATTCAAAGATGCTTAGTGCATTGCTTAGTGGAGTGAACAGAGCATTCCCATTTGTTGAAGACAAAGAAGATCGCTATGATGATCAAATCGACACACTGTTCAAGCTTTGTCACAccagcaattttcaaacaagcttacagGCCttaatgttgatatttcaagttATGCAATCGAGGCGATCACTTACCGATCGTTATTATCGCGTTTTATACGAGAAGCTATTTGACATTGGCATCAACACTTCAGCCAAACGGACGATGTTTCTTAACACTATTTACAAATCAATAAAAGCAGATTCGTCACTGAATAGAGTGAAGgcatttttcaaaagattgttGCAATCGGGATCAACCGAAGAGCCGAACTTTGTCTGTGGCCTGCTTTTCCTTCTCTCCGAGgtGCTGAAGTTGAAGTCAGGAGTCAAAAGCCTCACTATGCAGCCAGAGGAAGATGACGAAGATgagcattttgaagatgccAGTGACGATGCATTTAAAGCACCCAATGAAGACCTTGTAGAACAAAACCAATCGGGAAATGAaaagattgatgaaaattcagATCAAAAGTCTGGTTGGACCTTCCGTGCTGACTTAAAGAGAAATCATTACGATATCCAATGCCGAAATCCACTTTATAGTGGAGCTCAATTTTCTTGTGCCTGGGAGCTTTCCCCTCTCATTAAGCATTATCACCCTTCCGTGAACCGATTTGCGCAGTTTGTGCTTGACGGTAATCCTATAGAATATAAAGGCGACCCACTTCAGGATTTCACTCTCGCGAGgtttCTGGACCGTTTCATGTACAAAAATCCTAAAAAGAACCCAAAagaacATGGAAATTCTATAATGCAGCCAAGAAAGACGTCCGAAAGATTGAAGGAATTGCCAGTGAATTCAAAAGAGTTTATGGACAAGAAGATCACAAAAGTTCGCGAAGACGAAATCTTCTTTTACCAgtatttcaaaaagaaaactgaaatcGAAGATTCtaagaaagggaaaaagaaaaagcgaAAGCTTGATGCAGAATTAGACATCGAAGATGAGAATGAAGGAGAAGGAGTGGATCTAGATTTTGCGGGTGAAATGCAGAAGACCAAGGATGCTCAGCCGAAGTCCAAAAAGAGAAAAGCGAGAGgtgaagatgatgatgatgatgatgatgatgatgacgatgaaaATGAGGATGATTATGGCAACAATGCAGGTGACGATGTCTCAGATGAAGGGGACTTTGATTATGACAATATGCAATTTTCAGAGGATGAAGATTTCGATGAggatgattttgaaaatgagacaaaacagggtaaaaagaagaaattttccGATGCAGATTACGAAAAGGCATTACTGGAGAACTTGAGTGATTCAGATATCAACGAAGACCCCGACGAAGCAACATCTACAAGGGATAGCAATATTGGTTCAATGTTTGCTGCTGCTGAAGAGtttgcccACTTGCTGGAAGATACTGGAACGTCAAAAGGACAGCAAAAGCAAGCCAAATGGGAAACGAGGAATGTTGActggaaaaaaacaaaggccGCCAAAGGCAAAGGTGTACAAGGACATAAAAATagacaagaaacaaaaaataaacctgGGGGTTTTCAAAGAGGCAAGAAAGATGCAGGACACTCATCAAAACAGAAAGGTGGAGGTAGACAGAAATTTAATAGGAACCGTAGAAAGTGAGAAATCTCGTAGAAATTTCCATAAAGCATTGTTACCTATGCTGGAActccattttgtatttttgaaattttatgccATGCAGAGTTATAAAGACCTTATTGctattta

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03914 all species →	CBF	CBF/Mak21 family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR040155 all species →	Family	CEBPZ/Mak21-like	Interproscan
IPR005612 all species →	Domain	CCAAT-binding factor	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12048 all species →	CCAAT-BINDING FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14832	MAK21, NOC1, CEBPZ; ribosome biogenesis protein MAK21	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.