Gene detail

Detailed information of XP_065069113.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_92:5049985...5068440
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065213041.1

AAACCCCCCGTTGTTAATGAAAACCGACATAGCTTGCAAGTTCACGATCGCCGTAATGCCAATATGAAGGAACTTTCTGCCAGTGACCGCGAAGTTTGAGACCAGTGATTGTTTAAAGATTTAACAATCATTTACCGTTTTTTGCAATGTTCAATTTCCAAGATGATCGACGATTCTGGAAGGCAGCTGGTCGACAGgctaaaatttttgatcaaatgtAACTTGGTCTTCGTTAGGCCTTCTCATGGAAAACAACATGGAGATAATTCTATGGAGGGATATCTTGATCACTTTTGCGCTTTGGATTTCTGCTAGAATGGTTTCGGGGAGGGAAAAATTTACAGTCAAATGTGTGGGTAAACCAGCAAACTCACACTTGTGGAGACTGAATCAAAATCCACCATCTTACCTATTTGGAACAATACACTACCCATGGGATGTGCTGTGGAAAAACCCTAATCACATACACAAAAATGTAAAGTATGCATTCAGAAAAAGCCAAAGCATTTATACAGAACTGGATTTTAGCAATGTCACAACTCTTAAAGGTTTGCAGAAGTGTCGATTTCTTCCAGGAAActtgactttgaaaaatatcttgccaCAAAGCCTTCTGACACGCTTGAGAAAACATCTTGAACATGTGAGGAGATCATTTGAGAGTTGGCTACCCAAAAACTTCAATACAGCTTATCCAAGAGCTTTAGCTGCAGACTATTTGTACAGTGTAATTACTCAGAACTGGAAGAGAAAAAGACCTGTTTGGCTAGTGGTTTTAATTATGCTCGAACTGACACCCTCAAACATCAAGAGGCAGCAAATGGATATCttagatttgtttttgacaaaacgGGCAAAACAGCAAGGGAACAGTATTGGAGGTTTGGAAACAGCAGAAGACCAATGTGATCCATTCAACAGCATTAATAACAGACAGGCCATCTTCTTGCTGAACTATACGCTTCACCTGCAAGAACTTATTCGCAGTGGGAAGATGAAACCTGAGCACGAAAGCGAGCAAAACAAGATCTTAAAGGTTTATTTATGTGGAAATCTAGAGAAAGGTATCATCACTGGTTCGCGTCGACTTCTTGTTAATAGCAATGCGAGACACCATGTTCCAGCAAGCCAAGTAAACAAAATCATCCAAATAGAAGAATACCTCATGAAGAAGTTGGTTTATAAGAGAAACGTGAAGATGGCAAGAAGgattgatgaaattttgagaGCAAACAAATCAgtgacatttttctttgccattGGCACAGGTCATCTGTCTGGAAAGTCTTCAGTAGTTGagttattaaaagaaaaaggccACAAAATAGACCACATTAAACCACTCGATATGCTAGCAGGGCAACGCAGGTGGGAGAAAAGGCGAGAGCGACGAAGGGCTAACAGGAGACGTGGGCAGGAAAAGGAGACTTTAAGCTTTAATTTCCATCGTACTGCAAAGCCCAGAGTGACGACAACAATCAGAACAACAGTTGCTGTACGGAAAGAAAACAAATTTGGTGATGGCACAGTGGATATGTCTCCAACAAATTCTACGGATAATGTTTCAACAGAGAACGACAAACAACCATATGTCTACTACTACACAAATTCAAACTCAAAAGTTGCTGATGATGTTAGCATTATGATGGTATGCTTGTACTTGATTTACATCTTGCGACAGGTAGTGACGTAGAAAGCGAGGTATCTAACCCACACGGGTATGTTCTTCGTGTTTCCACTGCGAGACTACGGCCTGTTATTGATGAAAGAGAGGCCTATACTCCAATCAGTTGCCAAAGCGAATTCTATCAAATGCCAGAATGATGTGAAAAAGTCAGAAGGTGTTGCAGATTTAAACATAAGTACAGAGAAGCGAAACTGAAAGATGTGCTACGCCTACCGATTTGTGTATCATTTGTACTTGTGATGTGAAATAACAACAGGCACTCAGAAAAATGTAATGCTAAGCACTCAGAAGTTAATATGGAAACAGCAGCTACAAGAAACAGctaaataatttatatatcCCACAATTTTTATCCACAAAATTGCTCCTTTTCACAAAGATATTGATAGTTGCAACGAAAACATTCGTTACTAGGAGCGACAATTTGTCTAtaatgtatttaattttttaaacgttttttttttaaacctgtgGTTTTAGAATCTCGTTGTAATATAATGCCACGAAGGAATTCAGATGGGTATGGCTTTTTAGCTAGATGCCAGGGCTTTGAGAGGCATTAAGCACATGGTCCCATGTTTCAGAAAGgtttattggttttttaaacaCTCCTATGCAAATCCCATTTCAACCCCAAGGTAAAGTTGACCCTGGCCTGTGAAGGGAATCACATCGAGTGCCGATCCTACTGTATGCCCCAACAACCCTACCCCAACTCCAAATTTTGCTTGTCAGAACTTGATTGCCCCCATATCCCAATAGACCTAAACTTTGTCTTGTTAACTGGTTCGTGATCTCTAGATCCTAGATATTCCATAAATCTAAGCGCGGTAGTGAGCACAAGTTCGCTATAACTAAATTGTTGGCGTTAATTAGCTTTTTAGctatatgtatttttttgttctttcttgcCAACGTTAAAGGAATTGTTAATAATAGCAAAAGCAAACTTTCGGATTCTTTAGtgatatattttcttctaACTATGCTATTCAATGAATTTTAACGATTGGCTTCAGCAAGATACTCAAAGGGGCCTATCAAAATCGAACAAGCAAGTTAGCTATGAGTATTTTTCTTAACGTTGGTACCGCACGTACAGGCCTTGCACGTATGCGAACTTCGAGAACCGCTCCAATTTACGTCTCCTTATCAACTGATACAAATATGTTCAGTTATAGGCAGCCTCTCACTACCAAACAGTTTGAAACGGggatattttattaaattctttattaaaCTGTTGTAATGCATCTAGTCTTCAATTGCCATGATTAGAGCGAGAGTGGTAGCACAGAGCTCACGAGCTCTCTTTTTAACTGGCTGTTATTTGCAGTTTCTGTCCAGTTTCTCAATTCGTTTATAAATATAAGTGTCCATCAAAACGAGATCTGAGTAAAAAACTCTCCCTGCgaatatatttaaagtttcataaatttaaagGCTCATAATTCCAGTGAATGGGAAAAGTCTCTTCTCATCAAATTGATCTTTTGGAATTTAACACTTGTAAACTGAGTCGCTTTTGGGCGTTAATGTTcatttgtgttttatttaagCTGTTTAGCCACTTCAGTCTTGGTATGGATCGATTTCAAGTCATACCAAGCAGGTAATTAGGTTCGAAAGacttatattttaaagaatactGTCGCGTTATATCTTCAGTGGGTTGTCAAAATGGGCCTAGGTGTGCCAGTCCAGTAGACTGGCCGGGATGAGCGTCTAATACCGTATTTATGCAGTATTAGTTTGTTTAAAGTTTGGTTTCCCAAATCACATTTGGGTTTTAGGGTCTGAGAATATCTGAGACAACATTAGCATCACTGATAAATAATATGTAACTAGATGTGCAGTTTTTATAACATCTATTTTCGTATGAGCAAGCATGCTTTTTAACATCTAAACTTTGCAGAATCTTTTGAGGAATCAAGTCAGTCGAACGATGTATCGTATCtgttgaatatatttttatcatgagTAATTTGTATTCGAatttttatatgtatatatttttattcagtgTTGTTATGTATATAACAAGATTTAATCggcaaatgaaatcaaaatgc

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004747 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01963 all species →	TraB_PrgY_gumN	TraB/PrgY/gumN family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002816 all species →	Family	TraB/PrgY/GumN family	Interproscan
IPR040230 all species →	Family	Protease TIKI1/2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31120 all species →	METALLOPROTEASE TIKI	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004175 all species →	Molecular Function	endopeptidase activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030178 all species →	Biological Process	negative regulation of Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25185	TRABD2; metalloprotease TIKI	EC:3.4.-.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.