Gene detail

Detailed information of XP_065069271.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_92:2736060...2770998
NR annotation: no NCBI-NR hit recorded
Species abbreviation RESCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135694448

ATGAGCATTTACAGGGGGAAAATGCCAGTTTTAAACGAAACAACTCAAACAGTCAAAACCCCAGATAAATGTCTCAAATCTGCATCTGATGAAGTTGATTCACAACTAGAGAAAGACCGCCAGTACTGGGATTTTGGCACCCAGTTAGGTGTCGGTTCCCACGGGCAAGCAACATTTAGTGGAGTTAATGACTTTGATTATCCAAATGTTCTTGGCATCCAACTACCTCCACAAAGAAGTGGCTTGCATCTGAATTTGTTGCATAGTGTTAAGAGAATTCCTCTCCCTGAAGAATTGTTTGAGCAGTTCAAACATGTTCAAGCAAATGTTACAATGGGTCTTTTTGCTGAAATAAGCAGAGCATGGCTGGCAATTGATAGTGATATTTATGTTTGGAACTTTGAAGATGGAACTGATGTGGCATATTTTGATGGCCTTGACGAAGTTATCTTAACTGCAGGACTTATAACTCCAAAGCCAGGTGTTTTCCAGGAACACATACAATTTTTGCTTTGCATTGCAACACCTTTCAGTATCGTTGTTCTTGGAGTAAGCTTCTCTGAGGAAAAAGATGGCAAAGTTTATGGAGAAATGCATTTACAACCTCAGCCATTGTTTACTGTCCCAACGGATAATGTGTTTATGACCTCAACTGCTGGATTGTGGAATGGGCGAATATTTCTCAGTGGGGCAGATGGATGTTTGTATGAGCTGGCATATCAGGCACAGAGTAGCTGGTTCAGACAGAAGTGCTCTAAGATAAACCACACAGCAAGCTGGATGTCAATTCTTGTCCCATCTTTTGTGTCCAAAGCCTTTACAAGTGAAGATCCAGTATGCCAGATTGCTGTTGATAATACGAGAAATATTTTGTATGGAAGAACAGAGAATGGAAATATCCAGGTTTATGATGCTGGTGAAGACGGGACAAAGATGCGACACGTTTCATGCCTGTCCTCCAATTCCATTGCAGTCAACGCCTCGTATGTTGCAAAAAATCTAGACAAGAAACATATACAAAGAATTATTCACATAGCCCCCGTCTCAAAAGCAGAAGCATCTCAAGTTCATCTGGTTGCCATTACTGATACAGGTGTGCGGCTTTACTTTTCGACAACAAACCCAGCAAATCCTGAAGGGAGACCATGTTTACTGCGTTTGGTTCACGTAAGGCTCCCCCCTGGTTTCACACCGTCTGGAACGACTTCAAAACCAAGCAAGGTCCATCAAGCATTTTATCGGCAAGGGACGACGTTAATGCTGGACAATTCATCTGAGGAAAACGATGTTTTATGGTGTTTAAGCCAAGAGTCCTTTCCTTTTGAAAACAGCATTAAAGAGAGTCAGGTGTCATCGGCCATTGAAGGCAAAACATGGTGCGTCTCTGAGATCCCAGATTACAGCAACCCCAATCATATCCCAGAAGCTTTTTTCTCGTGTTTGTGGCCTGAGCCCCCAGCTATTGTTAACCAGCACGTTTTACCTCGTCGACGATTTGTCTTGCTAAGCCCAAAGGGGAGCCATGTTGTCACGACGCTTCGACCATTTGAACAACTCCGAGAACTTTTTATCAACAGTGGTAATGGCATGGCTGATTCTATTGAAACATTTTTTCAGTTTTACGGAGTCACACAAGCCTGCGCAATGTGTCTTGTACTTATCTGTCAAAGCCCCGAAGCAGAAAAAGAGATTGTGAACCGGGCTGTCCAAGCTTTCTTTAGGTATGATTACCCATCAACACTTGCGGGACAGAGAATGCCCAGCACAGGGGCTCAAACTGCAGAATCGACGGTCAACATCACCGATGCTAGTTTCATGTTTGGAGGCCCTGTGCCCGCTGGCAGCGCTCATGGGAGTTATTTAGCATCCCCAGTCCAAAAGAAACTGAAACCGCAATCTGTTGGCTCACAGTTCCAGACTTCGACACCGGCTACCGGACTGCTAGCGAAATCCGGTCCACAACCCTCATCCGGAAAGTACAGTGGAATCGCGTTGTATCTTGCCAGAATTTTGAGGCCCGTTTGGAATCATCTACTGGTGTACATTGATTACCCTGATGGAAGAAACCAACAGCTGGTAAGCAGACTCTCGAGTGAAGATCTCTCGTGGTTTATCGAAAGTCTCCGAAAGCTAAAAGAGTTTATGGAAAGATACTCAAACTTGGAACTCTTGGGCTCACCAACTCGCCGACACGATGCAGTCTTAAGTTCACAAGTCGCGGGTAGAAAAAGAAACCTTGGGGACCAAGAAGCTGTTGCGGTTGAACGAAATGCGTTGGTCAATCTTGCCAACCTAATCTCGATGTGCTGCGAAGCGCTGGAGCTGTGGAGGACTCTCTGCGATAATCAATTCCATATTGTCGCCCAAAATCTTCCTCAGGAGTTGAAAGAGAAGCTAGCTGGATTGTCGTTCAAGGAATTTGTATTAAACGGGCAAGAGATTTCCGCCGCCCTAATTGGTTGTTTGATGGCACGTTACCTTGACGACCAAGCAACAGTTGATGCCCTCAATAGCCAATTGCGAGAGATCTGTCCAACATTGTTTTCTATTGACGATGCAATTTATGCAAAGGCCAACGAAATTGTTCATTTTGCAAGACATGTTCTAGACCCGGCTGAAAGGAACACACTTCTCGCAGAAGCCATCAGCATGTATTTCAAAGTCCCAGGACTGCTAGACTTGACATGGATTTGCGAGCAGCTGCAATCAGTGAGACATTTTGATGGGATAATTGAGCTGGCTCTATATGCTGCCGTGAAGAGGGACCCACAAAACGTTGCGTTGCATTATTATAAAGCTGGAGAGCCAAGAGATGACACGCAAGGGAAGGAAGCTTTCATTCTCAGGTGCGATGCATACAACTGCATTTTGAATGCCTTGAGTCACATCTTCGAGAAGTCTTCAGAACATCCTCATTCCCTGCCAACAGAACCAGGGCCTCCAGTGCAACCAGATGTCAACGCGCTTTCTGTTAATCAAGCCAAACACTTGTTTGACCAAACATTGAAAGTTTGCCTCCAAAGTGACGACGAACTATTTCACGTAACTTTATATAAATGGATGATGACAAAAGAACTCACAGACCGGCTAATTGAGATTTCATCACCATTTCTTCAAACCTTTATTGTGGATACCGCTGCAGAAAAGCATCCAAACGATATCCCAATTTTGGATTTACTTTGGAAATATCACCAAAAACACAAGCAATACATCCAAGCTGCAAAAGTCTTGATTGGACTTGCTGAGCGACAATGCACGTCACTCGTCCTACAAGAACGTGTCGCTTATATTTCAAGAGCAATCATGTGTGCAAAGAATTCACTGACATTTGCAAGTTCAAATACAGAAGGAGAGTTTCTGCACGAGTTAGAAGAAAAATTAGAGGTCGCAAGAATACAATACCAGGTTTATCAAGCTTTAAACGCAACAAACGTCGGTCGCAGTCTCATTCAAGAAAAAGCTGATGCCATTAAGTTGCTTGACACACAGCTGGTCGATATATCACAACTTTATGGGGATTTCGCCGACCGTTTTGACTTGCTAGAATGCAAGTTGGCGATATTGCATTGCGCTGGACATCAAGATAAAGCGTTGATTGAGAACATTTGGAAACAACTCATCGATAAGGCTGTTCGTGTTGACGGTCGAATGGCAGCTGTGAGTCAAGTTGTGATATCAACTGGAAAGATGTACGTCACAAGCCAAGGATTTTTTCCTTTAGCTTTTATATTATTCTATTTGGAAAAAGTATCCTGTGAAAACTCGTGGGATCCGACCTGGGTATTTGTCACTCTAAGGGAGGTTGGTTTATCAATGAAACAGCTCTGGCTCGCATACGACAAACTTTTAAAAAGCAAGGAAGCTGTCTGGCAAGCCTCCGGGAAGCCATTGCATTTACTAAATGCAATCTCACTTTTCATCAAAACGTATTTGGATAACACCACTGTTGTTCCTTCAAGTGAAAGGCCAGCGTTCAACAGATCATTATGTGAAGCCTGCTCCGGTTATCTTGTAGAACTTGAATCGATGAGTGAAAGCAATACATTAGTGAAAAACTTGCTGTCAAGATTTCGCGGTGTCATTGCGCAGTTAAAGAGATAA

Transcript

rna-XM_065213199.1

TCGATTTCAGGTCTAACGTATGGCGCGAGAAGAGATCACCGATATTCAACGAGGAATTCCGCTGAACTTCAGATGAGCATTTACAGGGGGAAAATGCCAGTTTTAAACGAAACAACTCAAACAGTCAAAACCCCAGATAAATGTCTCAAATCTGCATCTGATGAAGTTGATTCACAACTAGAGAAAGACCGCCAGTACTGGGATTTTGGCACCCAGTTAGGTGTCGGTTCCCACGGGCAAGCAACATTTAGTGGAGTTAATGACTTTGATTATCCAAATGTTCTTGGCATCCAACTACCTCCACAAAGAAGTGGCTTGCATCTGAATTTGTTGCATAGTGTTAAGAGAATTCCTCTCCCTGAAGAATTGTTTGAGCAGTTCAAACATGTTCAAGCAAATGTTACAATGGGtctttttgctgaaataaGCAGAGCATGGCTGGCAATTGATAGTGATATTTATGTTTGGAACTTTGAAGATGGaaCTGATGTGGCATATTTTGATGGCCTTGACGAAGTTATCTTAACTGCAGGACTTATAACTCCAAAGCCAgGTGTTTTCCAGGAACACatacaatttttgctttgcattGCAACACCTTTCAGTATCGTTGTTCTTGGAGTAAGCTTCTCTGAGGAAAAAGATGGCAAAGTTTATGGAGAAATGCATTTACAACCTCAGCCATTGTTTACTGTCCCAACGGATAATGTGTTTATGACCTCAACTGCTGGATTGTGGAATGGGCGAATATTTCTCAGTGGGGCAGATGGATGTTTGTATGAGCTGGCATATCAGgcACAGAGTAGCTGGTTCAGACAGAAGTGCTCTAAGATAAACCACACAGCAAGCTGGATGTCAATTCTTGTCCCATCTTTTGTGTCCAAAGCCTTTACAAGTGAAGATCCAGTATGCCAGATTGCTGTTGATAATAcgagaaatattttgtatgGAAGAACAGAGAATGGAAATATCCAGGTTTATGATGCTGGTGAAGACGGGACAAAGATGCGACACGTTTCATGCCTGTCCTCCAATTCCATTGCAGTCAACGCCTCGTATGTTGCAAAAAATCTAGACAAGAAACATATACAAAGAATTATTCACATAGCCCCCGTCTCAAAAGCAGAAGCATCTCAAGTTCATCTGGTTGCCATTACTGATACAGGTGTGCGGCTTTACTTTTCGACAACAAACCCAGCAAATCCTGAAGGGAGACCATGTTTACTGCGTTTGGTTCACGTAAGGCTCCCCCCTGGTTTCACACCGTCTGGAACGACTTCAAAACCAAGCAAGGTCCATCAAGCATTTTATCGGCAAGGGACGACGTTAATGCTGGACAATTCATCTGAGGAAAACGATGTTTTATGGTGTTTAAGCCAAGAGTCCTTTCCTTTTGAAAACAGCATTAAAGAGAGTCAGGTGTCATCGGCCATTGAAGGCAAAACATGGTGCGTCTCTGAGATCCCAGATTACAGCAACCCCAATCATATCCCAGAAGCTTTTTTCTCGTGTTTGTGGCCTGAGCCCCCAGCTATTGTTAACCAGCACGTTTTACCTCGTCGACGATTTGTCTTGCTAAGCCCAaagGGGAGCCATGTTGTCACGACGCTTCGACCATTTGAACAACTCCGAGAACTTTTTATCAACAGTGGTAATGGCATGGCTGATtctattgaaacattttttcagttttacgGAgTCACACAAGCCTGCGCAATGTGTCTTGTACTTATCTGTCAAAGCCCCGAAGCAGAAAAAGAGATTGTGAACCGGGCTGTCCAAGCTTTCTTTAGGTATGATTACCCATCAACACTTGCGGGACAGAGAATGCCCAGCACAGGGGCTCAAACTGCAGAATCGACGGTCAACATCACCGATGCTAGTTTCATGTTTGGAGGCCCTGTGCCCGCTGGCAGCGCTCATGGGAGTTATTTAGCATCCCCAGTCCAAAAGAAACTGAAACCGCAATCTGTTGGCTCACAGTTCCAGACTTCGACACCGGCTACCGGACTGCTAGCGAAATCCGGTCCACAACCCTCATCCGGAAAGTACAGTGGAATCGCGTTGTATCTTGCCAGAATTTTGAGGCCCGTTTGGAATCATCTACTGGTGTACATTGATTACCCTGATGGAAGAAACCAACagCTGGTAAGCAGACTCTCGAGTGAAGATCTCTCGTGGTTTATCGAAAGTCTCCGAAAGCTAAAAGAGTTTATGGAAAGATACTCAAACTTGGAACTCTTGGGCTCACCAACTCGCCGACACGATGCAGTCTTAAGTTCACAAGTCGCGGGTAGAAAAAGAAACCTTGGGGACCAAGAAGCTGTTGCGGTTGAACGAAATGCGTTGGTCAATCTTGCCAACCTAATCTCGATGTGCTGCGAAGCGCTGGAGCTGTGGAGGACTCTCTGCGATAATCAATTCCATATTGTCGCCCAAAATCTTCCTCAGGAGTTGAAAGAGAAGCTAGCTGGATTGTCGTTCAAGGAATTTGTATTAAACGGGCAAGAGATTTCCGCCGCCCTAATTGGTTGTTTGATGGCACGTTACCTTGACGACCAAGCAACAGTTGATGCCCTCAATAGCCAATTGCGAGAGATCTGTCCAACATTGTTTTCTATTGACGATGCAATTTATGCAAAGGCCAACGAAATTGTTCATTTTGCAAGACATGTTCTAGACCCGGCTGAAAGGAACACACTTCTCGCAGAAGCCATCAGCATGTATTTCAAAGTCCCAGGACTGCTAGACTTGACATGGATTTGCGAGCAGCTGCAATCAGTGAGACATTTTGATGGGATAATTGAGCTGGCTCTATATGCTGCCGTGAAGAGGGACCCACAAAACGTTGCGTTGCATTATTATAAAGCTGGAGAGCCAAGAGATGACACGCAAGGGAAGGAAGCTTTCATTCTCAGGTGCGATGCATACAACTGCATTTTGAATGCCTTGAGTCACATCTTCGAGAAGTCTTCAGAACATCCTCATTCCCTGCCAACAGAACCAGGGCCTCCAGTGCAACCAGATGTCAACGCGCTTTCTGTTAATCAAGCCAAACACTTGTTTGACCAAACATTGAAAGTTTGCCTCCAAAGTGACGACGAACTATTTCACGTAACTTTATATAAATGGATGATGACAAAAGAACTCACAGACCGGCTAATTGAGATTTCATCACCATTTCTTCAAACCTTTATTGTGGATACCGCTGCAGAAAAGCATCCAAACGATATCCCAATTTTGGATTTACTTTGGAAATATCACCAAAAACACAAGCAATACATCCAAGCTGCAAAAGTCTTGATTGGACTTGCTGAGCGACAATGCACGTCACTCGTCCTACAAGAACGTGTCGCTTATATTTCAAGAGCAATCATGTGTGCAAAGAATTCACTGACATTTGCAAGTTCAAATACAGAAGGAGAGTTTCTGCACGagttagaagaaaaattagagGTCGCAAGAATACAATACCAGGTTTATCAAGCTTTAAACGCAACAAACGTCGGTCGCAGTCTCATTCAAGAAAAAGCTGATGCCATTAAGTTGCTTGACACACAGCTGGTCGATATATCACAACTTTATGGGGATTTCGCCGACCGTTTTGACTTGCTAGAATGCAAGTTGGCGATATTGCATTGCGCTGGACATCAAGATAAAGCGTTGATTGAGAACATTTGGAAACAACTCATCGATAAGGCTGTTCGTGTTGACGGTCGAATGGCAGCTGTGAGTCAAGTTGTGATATCAACTGGAAAGATGTACGTCACAAGCCAAGGATTTTTTCCTTTAGCTTTTATATTATTCTATTTGGAAAAAGTATCCTGTGAAAACTCGTGGGATCCGACCTGGGTATTTGTCACTCTAAGGGAGGTTGGTTTATCAATGAAACAGCTCTGGCTCGCATACgacaaacttttaaaaagcaagGAAGCTGTCTGGCAAGCCTCCGGGAAGCCATTGCATTTACTAAATGCAATCtcacttttcatcaaaacgTATTTGGATAACACCACTGTTGTTCCTTCAAGTGAAAGGCCAGCGTTCAACAGATCATTATGTGAAGCCTGCTCCGGTTATCTTGTAGAACTTGAATCGATGAGTGAAAGCAATACATTAGTGAAAAACTTGCTGTCAAGATTTCGCGGTGTCATTGCGCAGTTAAAGAGATAAATGTTTAGATTTAATAGAGTAAAAGCTGTGCTGATAAACACACAACTTAAGCTAAAATAGGGGGGGGTTGGAAAGGTGTTGTCCCTTAAACTTTGATAGACAATCTTTCCACTATGTTATGTCATTGTAAATCTTTGTGTAAACCTCGTGTATACGGTACTTCATGTATACGTCACCAAATATATGCCCCCGAATGTACAACTTTGATGTAGGTTGTTCAACAGGCCATTTAATCCATTTACTCGCGTCAACCAAAACTCTATAAAGCAGAATTAAACATGTCTGATATTGTTTGTGACAGAAGtttgattttgtaatttttgcatgaattttGAAACGTGGAAGTACTTAAGAATTAATCAGTAATTTGAAACCAGTTGATGATACTGAAGACCTGGAccaatcaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03177 all species →	Nucleoporin_C	Non-repetitive/WGA-negative nucleoporin C-terminal	Family	Interproscan
PF08801 all species →	Nucleoporin_N	Nup133 N terminal like	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042538 all species →	Homologous_superfamily	Nucleoporin, Nup155-like, C-terminal, subdomain 3	Interproscan
IPR042537 all species →	Homologous_superfamily	Nucleoporin, Nup155-like, C-terminal, subdomain 2	Interproscan
IPR007187 all species →	Domain	Nucleoporin, Nup133/Nup155-like, C-terminal	Interproscan
IPR042533 all species →	Homologous_superfamily	Nucleoporin, Nup155-like, C-terminal, subdomain 1	Interproscan
IPR004870 all species →	Family	Nucleoporin, Nup155-like	Interproscan
IPR014908 all species →	Domain	Nucleoporin, Nup133/Nup155-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10350 all species →	NUCLEAR PORE COMPLEX PROTEIN NUP155	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000972 all species →	Biological Process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006405 all species →	Biological Process	RNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0036228 all species →	Biological Process	protein localization to nuclear inner membrane	Interproscan
GO:0044611 all species →	Cellular Component	nuclear pore inner ring	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14312	NUP155, NUP170, NUP157; nuclear pore complex protein Nup155	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.