Gene detail

Detailed information of XP_065069289.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_92:11276898...11291404
NR annotation: no NCBI-NR hit recorded
Species abbreviation RESCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065213217.1

CTGGCTTCGAACGAGGCAACGCACTGCCCAGCCTAGTTTGAAGCGAAATGCGgcaaatgatttgaaaattacaagcaCAAGAAATCCAGCACTGAACGATTTTGTCTCCTAAAGTACAAATTGCTTGAGATTTGGCAGAGAAATGACAAGTACCAAGAAAAAACCACAGTGGATATCCTCATCATTTGGAGACTTTGCTGCTACACAAGCAATAAAGCCCAAATCAGCcccaacaaaaagaaagaaaaatggaCATTTTGTCCAAGAACCAGattcaaatgcaaattctGCACTACTACCATGGTCAGAGAAACACAAGCCATTGAAAGAGACTGACCTTTCTGTGCATAAGGCTAAGATTGCTGAAGTCAAAGATTGGTTACTAAGTCATCTTTGCTCACAAAGAGACAAGAACCATGGAAGTATCCTTGTTTTGACTGGACCAGCAGGAGCAGGGAAATCAGCAACCATAGATGTTCTTAGTAAAGACTTGAACATTGAGCTTCAAGAGTGGAGCAACCCAGCCACCACCACAAATGAGGAATATACAATGTGGAAAGACTTTAGAATTTTGCAGACGGATTCCCAGCGAAAGCAGTTTCAAGATTTCCTTTTACGAGCAAATAAGTATTGCAGTTTGTCGCTTTCTGGCCAGGAGCCGTCCAATTCTGCACATGGAAGGAAAATTATCGTCGTTGAGGATATACCAAATGCGTTATACAGGAATGTCAAGGATTTCCACGACATTTTGAGGCAGTTTCAAGCCACTAGTCGGAACCCGTTGGTGTTTATAATATCTGACAGTTACGTGGGGGAGAGCAGTTTACATCGTTTGTTTCCGAAGAAAGCTCAATTGGATCTTCGCATTAATTGCATCAACTTTAATGCTGTAACGAATACCAATTTGGTGAAGTGTTTGACGAAGATAGTCAACACAGAGTCTCAACTGAACAATATCAATGTGCCGAGCAAGGATGCTCTGGACCTTTTAATATCAAGCAATGCTGGTGATATCCGCGCGTGCATAAATTCGTTGCAATTCTACTGTACAAACGAGTATTACTCAGGAAAACCCCATGCTGGAGactctttaaaaaatagcaCTGCAAAGAAATCCACGTCGaaagaaaaatcttcgaaagcaaagaaacaaattgcAGAAAGTGATGGTGGAAGTTTGTTAATGGGGAAAGAtacttctttgtttttgtttaaggCACTGGGAAAGATACTTTACTGTAAACGTGAAGCGGTTCCAGATTCTGAAAAATCCAAGCAATTACCAAGGCATCTTCAAGTACATACCAGGGACAGGCTCTTGATAAGCCCAGAGgaaaTTACAGAGAAGACCCACACTGACAAAGAAACCTTCAATCTTTATCTGCACCAGAATTATCTCGATTTCTACCAAAACATTGATGCTGTGGCAAATGCCAGTGATTGGTTTAGCATTGCTGATTACGTCACAACTCAATGGTCGACACGGGACCTAATGAAGAATTACGGATCATCGTTAGCTACACGTGgtgtcatttttgcaaatcatcaaaaatccACATCGTCAACTGGTGCCGTGTCAAGAGGCTGGAAGCCTCTTAATAAACCACAGTGGTTCCATGCATTCAAAGAGGGAAATTCGAATAAGAGGACTGCAGAGGATCTGTTTTATGACATGCGTCATCCGGCTGTTGACTTACATACAGAAGTACTACcatatttagcaaaaattaacGTATCGCTTCGAACACCAAgtCATATCTCCTTCGTTCAAATGATATCTCGTTTTAATATCAATTCATATCGGCCAAGTGCTACCCTCGGCCAAATGGAAAATGCCACCACAGACATCGATGACATGGGCACCGAAGTTGACTCGAAAATGGTTCCAAAACAAGATGACGAGAACTCAGTAACTTTGAGCCAGCTCGGAGTGGAGACACAAGGAAGCTGCGAGGAAAGTGACAGTTTTGAGGAGAATTTAATTGAAGATTTTAGTGACGATGATGACCTTGCCGATTTTCTCCTTATGTAGTCTATGGAAGGGGGTTTAGATGCCTAAATAAAGTGCACGGAATCATCGAGAATTTGCTGGTAGTGGGAGTAAGAATTTGCAAAAGGTATGAGTCTTATATGCAATGTTTTTAACCCTCAACAGAAGAGCGGATCTTAAATTTGCACAACTTATACCTTACGTTGGTTGCAGCAATAAAGACGAAAATGAACATGACCATTCATGATATGTTTAGAttcgtgaaaaaggcaaatatgCAAGATtaagaaaaaccaaaacattgcaaaaagataACGATTGCATACACACAACTGATGTACTAAAAATTGCATCTGCATTCACAAGAAAATCCCTAGGATTGCTAATAACATCTAGGTAtctttcctttgtttttagTCGTGGCTTAAGAAAACCCCAGGCTCTGTAATTCGGTGATAAATGCTGATTATTGTATATCTTGACTGCTATATGGATGTATCGCTGTTAGAAACTGCTGGCAATCTCTTTGGGACCCTGACCCTACTTCCCATCTTTCAGCAAAGCCGGTATCGTTGCTTAAACCTCAGGATTTCCAAGTAGGTAAACGTGCAGTTGCATCttaaatgttttgacaagggTGAAACCACAGGATATTCCTTGTTGATGGGATACTATCGTTTATCAAGATTGTATCTTGGATCCTTTGTTGCCGAATTGTTTAATGAAAGTGCTTGATTGTCAATAAACTGCATATAAACCCGTGCATCCCTCCTGGATACGCTTCTGTCTCTcgtaaatttaattttattattcgATATTTATAGTGAAAGTTCACCCGCTTAGGACTCGGACCAGTATTTGTATAAATTGTTAATATTCATATTAAAGTGAATTTGATACActataaatttgcattttcgAATCATGCATCTTCTGGCTAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03215 all species →	Rad17	Rad17 P-loop domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004582 all species →	Family	Checkpoint protein Rad17/Rad24	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12172 all species →	CELL CYCLE CHECKPOINT PROTEIN RAD17	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000077 all species →	Biological Process	DNA damage checkpoint signaling	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0003689 all species →	Molecular Function	DNA clamp loader activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0033314 all species →	Biological Process	mitotic DNA replication checkpoint signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06662	HRAD17, RAD24; cell cycle checkpoint protein	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.