Gene detail

Detailed information of XP_065069558.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_10:13964351...13978328
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065213486.1

ATGACGGCAGGGGTTTTGAAAAACGGCCAAAACGGAGAAATTTTTGTGTGCGAAGTCTGAGTACACTGTGTTTTAGATAAGTGGTCAAAAAGGCCAGATGGCAACTCTGGCCACTTCAATgaggtaaaaaaaattttctacctCATTGGGCCACTTTTGcaagcctctttttcaaacGGGActgccttgatttgaaatttagcataaCGTTGTATTGTAATTGTAttgcaaatgatttttcagcaaatctAGCTGGATTATAACATATCAAAAGATTAATTACACGACTGACATGATACTAAAAAAGGTATATGCATACGAGACAAAAGACGATTGTTGAAGTGCAAAACCCAGTTTAACGACATTGGATTTTGGCGGCTGAAAAGCAGAGTGCTGTACTTCTGCGTGTAAATCGCCTATGAACGCTAAACagatattaaagtttttaggATTTGCGTTACGGTTGGACTCAAAGTGATCTGATATACATTCGGTGTATGACAGGCAACTTATCAAATGGTATGTAATATCAGACAGGTGTTATAATGGCTTCAAAAAGTTCCAGCAAGGCTGATGATCttcaattgcaagaaaaggcAACAAGTAGTATTGGAGCTGATGCCATTGCTGTTGAGGACAAATGCTTCATTTATGACACAAATGACCTGCACTTTCAATTTATAAACTGGCCTCCTGATGCAGAGAGTTTTACACAAAGTAAAtttgatgaaattttatcagaaaaatgGGATATTGCAATGGAAAATGGTACTTTTAATTACAACTTGGATGAAGTTAGAAGAAGAAAGATAAACggaaaatatgaatttattgCACAGCTTAATTCAAAAAGATTTAAGGAAAGACGAAAACCGCAAGAGATCGATTCCGTCAGACAGCCGTTTAGAAAAGACAAATTCAACTTCACCAAAGTGAAAGAGAATGAGattttgtttaaaatgaaatcagcAGAATACAAAACCAAGGAGAGCAAAAAGgtAGAGGAAAACCTGGTTATCGTCAATATTAGCCCAATTGATTATGGTCATGTGCTGCTTGTTCCAGATGCCACTGCCCTGCATTCACAGGCTCTAACATATGACGCTGTGAAGTTGTCAATCGACGTCTGTCTTCTTAGCACTCAcagGGGCCTTAGGATTGGTTTCAATAGTTTATGTGCATTTGCTTCAGTCAATCATTTACATCTTCACATAATTTATGTAAATTATGTTCTACCGATTGACAAAGTTAGTGTTTCAGAAATCTGCAATGGTTTATACGAAATAGCTGATTATGCTGTTCACGGTTTTGcattgcaaattgaaaatcgAGATATTGAAAAGCTTGCGAGgAGGGTAACAGCAATCACGTCTTACTTATACGAGAATGAAATCGCCCATAATTTGTTCATATGCCGACAGAAAGCTTTGCCTTTGAAGAATGCACAGGATAACAATGACCCAGAAGCTGAAAGCACTGTTAGGGTTTttatatttccaaaattatcTGCCCCAGGAATCAAAGATACTAGATATATGAACAGTTGCTGCTATGATTTAGCTGGTTATTTGTTGCTTAAAGatgaagaagaatttgaaagtttgaatGAAGTTGATGTTATTGAAACCCtgaacaaattttgcttaCGAGAAGATGAATTTGCTGACTTGAGAGACGcaatttcattgttattaCTAAATctaagactttaaatttagtCAATcgtacatttttcattatttgcgTGAATGAATTCATTCTTATACAAGATTTAATAGgcacatattttaaaatagaaatttagaaatgtCTCAGTCATAATTAACATGTTTATattaacaatctttttgtggtacaaagtttaaaaatggctttgaaaaaagcaaacattttgagtcatactaTAGCTTTTTGCCTGACACGCTTCAGAGTAGAAgacgtcagaacatagatcaaaatactacgctaggaaatatatatacccagttgttgaTCATAATAGgcaagcagcactgattgggcaacctcaacagtcatgtgatcgcatttctgattggccaattttgatccacaactgggtatatatatatatcttataGCGAAATGTcaaccaagttgtttttttattgagcatctatatatatatatttatatttcctaTCCTAGTGTTTTGATTTATGTtatgacgttttatactctgaagagtgactcaaaatgtttgctattttcaaagcaatgaatatttttaaatacaataaaGAGGCATTCTTATAAGGCCTACTGGgttccttgtttttatcaatgaaattaacttattttcataaaatgctgTGGGCGTGTTTTCTTCTGAGAAGATTTTCTACAGAAGCATTCTTCGGAACAGGATTAGTAACAACtaaattttcaagagtttCTGGAAATTGAAATTCACCGATATTTTGAGGTAGAAATGATGAAACGTCTGAAAAAtgagttttcaaaatgaactttcCCCAAATTCCATTCGTAGTGTAGGCAAAATGTGTAGGCATTTAAAGAACATAGCGCTTCATGAAATATCCCTCAGAATGTCATAAAATATGCCAACTGCacatttcaatcatttttggaCCAAGTGGACGAGAAGAGAAACAAGTGCCATTTTTAATAGAGGCGTTAGCTGATTTAGCTGTTTGctgattttttccttttaggCCATTCCTATCCCATCCTAGCGTTAggattcatttaaaaatattctgcaAGTTTTGGTGACATCCACCCTTGATGTCACAGTCTCCATGATTTAGTCTCGGAAATCATCATGTGACGCTATCATCTAAATAACAATTGCCATATGTAACTCAACTTGTTGCTAGATGGAAACATTGCCGGTGAACCCTGTTCAGATATTCTTACGAAGATAGCCCTGGTAATGCTTTGGCATCTAGGACAATCTGATGTTCATTGGACAAAATTATAATGATTGATGTGTTCAAGATAAGCAAACGTGTTTCAAAAGTAGCCATACAGACGGATAAAGAGGTGCCTTTTTGAGTGAACACAGGGTcgataaattcaaataataagGCCGATAAATTCTGGTAAACCAAAATGACTGACTGGCTCTAATTATACAGTATGTTTTATCAATACATCATGAAAAATATGCAACAATACAGCAAAGAATATACATATTAAGTATGGCTAAGTGTattataaattgttaaaatattgGTTGAGTGCTTGTTACGTGTGTCGTGCAAAGTATGTTAGTAATCACTTGCAACTGGTTCTTATATTCTGatgtgatgacgtcattttccaACGA

Protein

Pfam domain

No Pfam domain signature was detected for XP_065069558.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR036265 all species →	Homologous_superfamily	HIT-like superfamily	Interproscan
IPR026506 all species →	Family	GDP-L-galactose/GDP-D-glucose phosphorylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20884 all species →	GDP-D-GLUCOSE PHOSPHORYLASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006006 all species →	Biological Process	glucose metabolic process	Interproscan
GO:0080048 all species →	Molecular Function	GDP-D-glucose phosphorylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15630	VTC2; GDP-D-glucose phosphorylase	EC:2.7.7.78	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.