Gene detail

Detailed information of XP_065069742.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_92:3048062...3125443
NR annotation: no NCBI-NR hit recorded
Species abbreviation RESCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135694795

ATGAATGAGAAGAAAAACGTCAAGTCAGCCCTCTGTGAAATGGTACTGCCTGTAATTTCGCTGTCGGTTAGCAATGCTGATCAAGAAGAAGACGCCGAAAGTTTATCACCGGAGAGTTCAAGGCTCCATGGTGATGCCGAGCAACATGCAAAGCAGCAAACGAGTCCACTTAATGAGCACGACCGATTGCAACTTCCCGTATCCGGATCGAGAAGAGAATCGTTTTTGTACCGGTCGGACAGTGATTGCGACAACCCCCCACCGCCGTTGTCTTCTAGGTCATCAATTTCAAGTGAAGGAGTACGTTCAGAAGAGCTGGTCACCCCTTTTGCCCAAGTTCTCTCCTGCCTTCAAAACATTCGCTCAAACTTCGTCCTGCTGACAAATGTACGCCAGAGCAGACATCGCCGAGGATCGGATGGTTTTCATTTAAATTCTAGAGTGTGCAATCTTTACGAGACAGGAGATGGCAGCTTTATTAGAGATGATATGTTTAAAAAGCTCACGATGGAAACATTGAAAGAATTTGATTGGTGTTTGAACCAACTTGAATGCTTGCAAGCCAGCATGACCATCAGCGATATGGCATCTAACAAGTTCCGAAAGATTTTGAATCGGGAGTTGAAAGAGAATTCAGAGGCGGGGAATGGTGCATCAGAAATATCGGCTTGGGTGTATAACACGTTTATTGGTAATCCAAACTTTTTCACCTCAACCCAAACAGACAAGCCTTTGGAAGACGATATCGCTTCAAATACACGGGAACACAGCGGGCCAATACGCGCTAGATCCCGCAGCCTCGTTCGCTCAATCAAGAAGCTGACACGCAGCATCAGTTGCTCAGGATCAATCCCAAGGTTTGGAGTTGAATGCCCGGATGAAGCACCTTTGGAAAAAATTATGGAAGACCTTGACAAATGGAATTTTGATGTGTTCAAAGTATATGACGTCACCGCGTCAAGACCTTTGCTTTCAATTACATACACGATTCTGCAGACGAGAGATCTCTTGAAAACTTTCAAAATCAAGCCGTCTGTTTTTGTCAGCTATATGTCATCTGTAGAGAATCATTACCTAAAAGATGTTGCATTCCACAACTCTACGCATGCGGCAGATGTGACGCAAGCAACACATTTTCTTCTCTCGGCAACCGCTTTTCAGGGCGTCTTCAGCGATCTCGAAGTATTCGCCGCCATTTTTGCAAGCGCTGTTCACGATGTTGATCACCCTGGCGTTAATAATCAATTTCTTGTCGATTCAAACTCAGAAATGGCGATCATCTACAACGACGAATCAGTGCTAGAAAATCATCATCTTGCCGTCGCCTTTCAGCTTCTGCAGCATGAAGAGTGCGATATTTTTCAAAATCTGTCAAAGAAGGAACGACAGATGCTGCGCAAAATGACTATTGAAATGGTTCTGGCGACAGACAATGCGAAACATATGAGCCTACTCGCCGCTCTCAAAACGATGGTAGAAACGAAGAGTGTTGTTGGGAAGCATTTGGTTCTTGATGCCTTCAATGATCGGCTTCATATACTCAAATGCTTGGTTCATTGCTCAGATCTGAGCAACCCTACGAGGCCTCTTAGGCATTATCAGAAATGGCTCGATCGATTGATGGAGGAGTTCTTCACGCAGGGTGACATTGAACGGGAAAAGGGCATGGATGTCAGCCCGATGATGGACCGTCACAATGCCAACATTGCAAAGTCCCAGGTCGTGTTCATTGACTACGTCGTGCACCCGTTGTGGGAGACCTGGGCCGACCTTGTCTATCCGGATGCGCAGGAGCTGCTGGATAACCTAAACAGAAATAGGGATTGGTACAAACTTCAGTGCTCTCCTAGCACGACAACGTCACCGAAATCGTCTCCTAACATGGCCTCACTACGAAGGGTTAGTTTGCAACTGGAAAACAGTGTAGACGACAGCGAGGAGAATGGGTTGCTGGAAGCGAAACACGGGGACGAAAGGAGAAAATCGGACTCTTTGTTGTTGAAAAAACCACCTGAGCAAACAATTGACAAAGTGCAAAAGCAACTGCAAGAACTAGCTTGTGGGAAGGAGCGCGAGAAAGAGAATAACTGTTCGAGTGCGGAGGAGCCCAGAACTATGAAGAACCAAAATGGAACTGTTGTAAAGAGTTGTGACAAAGGCAACGCGCTGCCAAAACATTCATCTCCTGTAAAACATACTGTAAATAGCTCAAATGATAAATTTAAAGAAAAAGTCATTACATGA

Transcript

rna-XM_065213670.1

AATACGTGAACAGTCTGAACTCGCTTGCATTTGCAGCTATGAATGAGAAGAAAAACGTCAAGTCAGCCCTCTGTGAAATGGTACTGCCTGTAATTTCGCTGTCGGTTAGCAATGCTGATCAAGAAGAAGACGCCGAAAGTTTATCACCGGAGAGTTCAAGGCTCCATGGTGATGCCGAGCAACATGCAAAGCAGCAAACGAGTCCACTTAATGAGCACGACCGATTGCAACTTCCCGTATCCGGATCGAGAAGAGAATCGTTTTTGTACCGGTCGGACAGTGATTGCGACAACCCCCCACCGCCGTTGTCTTCTAGGTCATCAATTTCAAGTGAAGGAGTACGTTCAGAAGAGCTGGTCACCCCTTTTGCCCAAGTTCTCTCCTGCCTTCAAAACATTCGCTCAAACTTCGTCCTGCTGACAAATGTACGCCAGAGCAGACATCGCCGAGGATCGGAtggttttcatttaaattctaGAGTGTGCAATCTTTACGAGACAGGAGATGGCAGCTTTATTAGAGATGATATGTTTAAAAAGCTCACGAtggaaacattgaaagaattTGATTGGTGTTTGAACCAACTTGAATGCTTGCAAGCCAGCATGACCATCAGCGATATGGCAtctaacaagTTCCGAAAGATTTTGAATCGGGAGTTGAAAGAGAATTCAGAGGCGGGGAATGGTGCATCAGAAATATCGGCTTGGGTGTATAACACGTTTATTGGTAATCCAAACTTTTTCACCTCAACCCAAACAGACAAGCCTTTGGAAGACGATATCGCTTCAAATACACGGGAACACAGCGGGCCAATACGCGCTAGATCCCGCAGCCTCGTTCGCTCAATCAAGAAGCTGACACGCAGCATCAGTTGCTCAGGATCAATCCCAAGGTTTGGAGTTGAATGCCCGGATGAAGCACCTTTGgaaaaaATTATGGAAGACCTTGACAAATGGAATTTTGATGTGTTCAAAGTATATGACGTCACCGCGTCAAGACCTTTGCTTTCAATTACATACACGATTCTGCAGACGAGAGAtctcttgaaaactttcaaaatcaagcCGTCTGTTTTTGTCAGCTATATGTCATCTGTAGAGAATCATTACCTAAAAGATGTTGCATTCCACAACTCTACGCATGCGGCAGATGTGACGCAAGCAACACATTTTCTTCTCTCGGCAACCGCTTTTCAGGGCGTCTTCAGCGATCTCGAAGTATTCGCCGCCATTTTTGCAAGCGCTGTTCACGATGTTGATCACCCTGGCGTTAATAATCAATTTCTTGTCGATTCAAACTCAGAAATGGCGATCATCTACAACGACGAATCAGTGCTAGAAAATCATCATCTTGCCGTCGCCTTTCAGCTTCTGCAGCATGAAGAGTgcgatatttttcaaaatctgtcaaaGAAGGAACGACAGATGCTGCGCAAAATGACTATTGAAATGgttCTGGCGACAGACAATGCGAAACATATGAGCCTACTCGCCGCTCTCAAAACGATGGTAGAAACGAAGAGTGTTGTTGGGAAGCATTTGGTTCTTGATGCCTTCAATGATCGGCTTCATATACTCAAATGCTTGGTTCATTGCTCAGATCTGAGCAACCCTACGAGGCCTCTTAGGCATTATCAGAAATGGCTCGATCGATTGATGGAGGAGTTCTTCACGCAGGGTGACATTGAACGGGAAAAGGGCATGGATGTCAGCCCGATGATGGACCGTCACAATGCCAACATTGCAAAGTCCCAGGTCGTGTTCATTGACTACGTCGTGCACCCGTTGTGGGAGACCTGGGCCGACCTTGTCTATCCGGATGCGCAGGAGCTGCTGGATAACCTAAACAGAAATAGGGATTGGTACAAACTTCAGTGCTCTCCTAGCACGACAACGTCACCGAAATCGTCTCCTAACATGGCCTCACTACGAAGGGTTAGTTTGCAACTGGAAAACAGTGTAGaCGACAGCGAGGAGAATGGGTTGCTGGAAGCGAAACACGGGGACGAAAGGAGAAAATCGGACtctttgttgttgaaaaaacCACCTGAGCAAACAATTGACAAAGTGCAAAAGCAACTGCAAGAACTAGCTTGTGGGAAGGAGCGCGAGAAAGAGAATAACTGTTCGAGTGCGGAGGAGCCCAGAACTATGAAGAACCAAAATGGAACTGTTGTAAAGAGTTGTGACAAAGGCAACGCGCTGCCAAAACATTCATCTCCTGTAAAACATACTGTAAATAGCtcaaatgataaatttaaagaaaaagtcattACATGATTTGGTGGATGTTTCGAAAAATCATGAATTTCAGTGTCATTCGTTCGAAAGTTTGTCGAATGATTTTATCTCTGCTCGGGTACTTGGGATGCCTTGCCGGAGGAGTTCGAATCTCGATCACTTTAAGTCATGTGTTCATGCGCGATTGCCGTGCTTGGCGCTGCAGAGAGCATCAAATGCCTTTCGATGTGTGTTTGCGGAAATAGCGCGTTAATGGACGATGAGACATGTACTTGTTGTAAGCTCGGTGATACTGTACCAGTCCTTAAATGTTGGGCATTCAATTCAATTGTCGTGGTGAATTATGCAAAGGTTTCAATTATTCTCGAGAAGCACTGATGTCATTGTTCTGCTTCGGAATTGAGGCCGATTTTCATGTTGGACTTGGCCGAAGGCTAAACAGTTTTGTCTGCGGCAACCCTATACCTCTAGCCAGCAATTTTTTCCATGTCAAACTTTTGACTTTGTACAGATTCAGATTTTACTGGACATAACATCTTCAGAAGTAGTTTTCCGTGCTAGCAGGTTTCCTTGCCTGCCACCTATTCGGTATTTTAACATTCAGCATATATGTGACGTCATAGCCCAGATTCTATTACTTTTCTAATCGCCACAACGTGTAGTTGCATTTGCGTCTCGCATGCAGACGTCGTTCCATTTCATCGGCATATCAGTTGATTGTTTGTATCTTAGGGTCTGTCTTTTCAAGGTAAATATCTTCTTGTGTTCGTACTTTCCCTGAATGCCGCAGAGAATTGTGTTTATCGGCAAATCAATTGTAGAGAACCTCAACTTGAATGTTCTTCAAAAGCGTCATTCTTGGTATTATTATCAAAGCCTTGATTCAGTTCTTGAATCTTCACGCGTTTAACGCAATTTTGTTATAATGTTGTTAGCCCTAGTGAATTTTCAACAGAATCGACAACCCAGTCCCCCCACCCCCCAGTATTAACgtaccattttgaaatttgttagGCCTAAAGTAAActtttcattccattttttcCTATGATATCggtttatatatattaaacGCAATGTAGGAACTGACGCAGATAGTTCACAGTATATATACTCTATATTTAAGCCCCATCAATTGATCGTGCCCCCATATTGTCACTGAACGGCAGAATATTTTTAGCGTTCTATGGCGTTTGATGCAACGGAAAGCTAACAATACCCATGCAAGTTTCCAATTATTTTGCACGTATTTACACAGAAACGCGTTCCGTGCTGTTTGAAATTCAAGGCCCTTAAAATTACTCTGGAATCATAATGGAATGCTTCCCGCGTTCTTCTGCGTCTTTCGCGTGTGTGAGAAGAGGGTGATTGTAGGCAAAGAAGTATATTGTATATCAGATGTTACAGTTACCAGTAATGGTAAAAACTTCGAGATGAGTTCGAATCAAATATGACTTGTAAAATAGTTTTATGTTAATAGCGATTTGAATCACTGTTGATTAATTGTTCGTTTGGTGAGCGGCACCGTAATGACCAAAGCACTTAGATTGTTTATAAGCAGTTAAGAAAGAGGAAACGATACGAGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18100 all species →	PDE4_UCR	Phosphodiesterase 4 upstream conserved regions (UCR)	Domain	Interproscan
PF00233 all species →	PDEase_I	3'5'-cyclic nucleotide phosphodiesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023088 all species →	Family	3'5'-cyclic nucleotide phosphodiesterase	Interproscan
IPR036971 all species →	Homologous_superfamily	3'5'-cyclic nucleotide phosphodiesterase, catalytic domain superfamily	Interproscan
IPR003607 all species →	Domain	HD/PDEase domain	Interproscan
IPR040844 all species →	Domain	Phosphodiesterase 4 upstream conserved regions (UCR)	Interproscan
IPR023174 all species →	Conserved_site	3'5'-cyclic nucleotide phosphodiesterase, conserved site	Interproscan
IPR002073 all species →	Domain	3'5'-cyclic nucleotide phosphodiesterase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11347 all species →	CYCLIC NUCLEOTIDE PHOSPHODIESTERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0004114 all species →	Molecular Function	3',5'-cyclic-nucleotide phosphodiesterase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0004115 all species →	Molecular Function	3',5'-cyclic-AMP phosphodiesterase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0048471 all species →	Cellular Component	perinuclear region of cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065069742.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.