Gene detail

Detailed information of XP_065070286.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_92:7412530...7430402
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065214214.1

AGGAGTGGGAGAGGGGGCTACACCTGAGATTGAATACTTGCCCGCGCCATACTGGCGACAAGTTTGACAATCAATACGATCCTCTCTGACAGTATTCCACTTCTTACTAGCatacaaaaaaaggaaagataaaCATGGAACAggaatatataaaaaacacaaagcaTACACAAAAGAGAAAtcttttgttgctgttgtttatATTCATTGTCGGGGTTTGCAAGGATATCGACAGCATAGCACGTGCACCTAGGGCAGGTTCTTCACCGTTAAGGGGGAGCTTAAGATCACGTGATACGCACTCTATTCAATTGTTTCTGACAGGAAAGGTCTTAGCAGATACCATCAATGCATTTGGCATTGTCATAACTTGAGATACCAGTTAACTAAAAGCCTTCTTTAGGGTTGAACAAAAGGACAAGGTTGCTATTTCCAAGCAGCAAACTATTCTAGGATATTTTGAGACTTTACCAGGAAGGGCCAATATCGAAATCCAGCACGAACCGAGAAACGTTTTTGCGAGGCAGTTGGCATAAGGTGTGGCAGCATTGTTGAAGCTTAAAGTCATAATGGAAGAGCacccttttgaagaaaatgggACGGATGTCTTTAAACCCCAATACTACTACAGTAGCTGGAAAACACAGgACGACTACCATCCATTTATCGAGGCTTGTCTTCCGTTCGTCAAAGCATTTGCCTACACGTGGTTCAATTTGCAGGCGAGGAAGAGGAAATACttcaaaaaacatgaaatacgAATGAGCCCACAACAAGAGAGAGAGTGCAAAGAGGAATTAGAGAGCCAACCTGCAGATCTGAAGCAAAAATGGGCATCCCGGTTACTTGCCAAATTAAGAAAAGACATTCGGCCAGAATGCAGGGAAGATTTTGTGGCTGCAGTTACTGGAAAAGGCTGCAATCGTTGCGTCATTTCAAATCCAGATCCAAAAGGGAAAATGAGGAGAATCGATTGTTTGCGGCAGGCAGACAAGGTTTGGAGACTGGATTTGGTGAtggtcattttatttcaagcttTCCCTTTGGAAAGTACGGATGGCGAAAGATTGGGGAAAACAAGTGTCTGTCGACACCATTTGTGCGTGCAACCAAACCATCTCTGTCTGGTTGTTAAAGAGCTTGACTTGTTTCTTACCAATTTTCTGGTCTGTGTCAATTCTGACCAACAAGCAGAACATTCGCAGTCAGGTGAACCAAATATTGCCTTAACAGGGGTTTTCACAAGCAGAGAGCTGTTGAAGTACTCGAAAGGTAAGATGCAAGCGACAATTTTATATGGCGGTGGAAAGGCAAGTTTCTCTGACGGCGAAAATGCATTGCCGAATTACGAGGATGCGACCGTCCACCGATCAAATGGTCGAATGCACCCTTATTTGACGTCTCTTCAAAAGCATCGCCACCATGCATCGTGGTCTTCCATGGAAGATGACGAAAATAACGAAGAAGAATGTCATGCAACAGGAGGAGGAACCAGTGATGGCGATTCAGGCGTTGGAACACCAACAAGACTGAAAATAGAGCATGGCGTGCCTTGTGGCCATAGCCCTCCAGCCATGCAGGGAGGTGCAACTGGACTGTCAGTAGCATCATTCCTCTGCGGAGGTCAACAGCTGCAACAGCAGCAGACAATCATTGGAACATACCAATCTCCAGGAGGACACTTTATTGGCAACCCTTCATTCCAGCATTCGGATTTCCAGAGAGCAGCGTTATTTGCCAGGAAACCAGACCTGCGGCAGATGGTCAACACATCTACATTTCAACAAGCAAATGAGGCCTACAGAAGAATGCAGGGAATACGGAGCCCAAGCACTGGGGATATGCCGGCCTCGTCGAACTACCACGAGACAGTGACACGAAAGAGCAGGTCAATAACTCTGCCTGTCACTCTTGAGCGATCGATGAGCATGGGAAATGGATCTCCTATGGATGTCACATCTCACATACAAGAGGATCAGAAGCCGGACATATCTCCTCAAACAACATTACACCAACAGTCATATGTACAAATGGAGGCACAACAGCAACCACCAATTTACATGCAATTTAACAGCCAGTACCCTGTCACAACAGCAATGATGAACGGCCACTCTCATGCAATGAGTGGCTCTCCGCTGACCACGGCAGACAGTGGCTCACCTGGGGTGCAGGCAATTGCGGTGCAAGCCAGGATGAGTGCCGCGTCGGGTATACCATTAGGTACGTCTGGAATGTACGGGGAAGAAGGCGGGTTCACCGATTTGTTCAATGCAGCAGCTGCCTCCTCTGAGGATTCTCTTTTGATGGACAAACTTTTCCAAATGTCCGGGTCGGAGAATAATGCTCAGACATTGAACCAAAGTCGATGATGGGTTAGTTGCAGTCTCCATTTGATGTTCATTCCTGCCTGATTGGGAAGAACCGAGTTTCATTTGACACCGGTCCGGATTCGACTGCATGGGCTCATTGAGATGTTTCTCGATTTTGGATTGAGAGCTCGTTATTGAGAATGAGCGTATTACTATGTTGATCATTGCCGGATGATATAAATAAGCCAGATGACATCACCTTTGATATAGAATGAGAAAGCTCCCTTTACTTCATATGTGCCTGCTAGCTTACTTTGGCAGAAGTTGGTGAATGAGCTTTATCTGAAAGCCAAAAGGACACGAGCGAGGGGAAAAAACTTTACGCTTGCCATTTTTGAAACCAGTAAGAATACATCAAATGaagattatattttattcaaagatgCTCTACGTAGTTTTCCGTTAGATATAGAGTCAAAGCTGGGTATCTGGTAATTAGAAGTAATTTCTAGCTAAAAATCAAGTAGAAGTTCATATCTGATGGACATATAATATAACTGCAGAAATACTTGGGGTACGTAGAACGCAAAATAAAGGCACGTCAAATTGTTTAATTGTCCAACAAAGTAAAGGTGTGATCGAATGCCcctgtttaatttttgtattttgtagtTGATATAAGTGTTGGATAGGCtagtttttctgaaaacatcAATGTTACAGACAGATTATTTCCATGGTTGACGACGTCTTTAGGTCTTTCTTATCCAGTTGATGACACCTTCAAGTTCAATTTCGAAACACCTGATCGCAATGGGTTCTGCTTAAGCATGGTGAAAGGCTAACGGGCTTTTTTGCGGGTTTATCCTTTAAATAGGCCCCATTTGAATACTGACCTCACCCTACGCCCAGTCAGTACCATATCCACACGATGCTTCCTATCAAAATAGTCCCTCTAACCCTACACGCATGCGTAACGTGTAACTTAAAACTGGCTATTTGCTGTTCATAATGGAAGTAAAGTTATGCATCAAATAATTTGCATACTTAATGACGTCAGTACTCGTTAAAATGTTGTAATATATCGAAGAGGCTAGTgatgtattttatttatatgtaATTTATTTACTAGATCCAttattttgtagttttttctGTTGCATAGCGTAATATGTTTGAAGTTTGAAGTTGTAAGTAAAGTGTCATAGTTGGTAGTTATATCGTACTGATAATGCCTAGAAAAAGCAATTTGACTGTCATAGATTTGATtatagaaatataaagaagaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03165 all species →	MH1	MH1 domain	Domain	Interproscan
PF10524 all species →	NfI_DNAbd_pre-N	Nuclear factor I protein pre-N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020604 all species →	Domain	CTF transcription factor/nuclear factor 1, DNA-binding domain	Interproscan
IPR000647 all species →	Family	CTF transcription factor/nuclear factor 1	Interproscan
IPR003619 all species →	Domain	MAD homology 1, Dwarfin-type	Interproscan
IPR019548 all species →	Domain	CTF transcription factor/nuclear factor 1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11492 all species →	NUCLEAR FACTOR I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065070286.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.