Gene detail

Detailed information of XP_065070568.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1226:8...3741
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065214496.1

GGGAGACAAAGCCAAATATGCATGTGATAATGAAGTAAAGAATTTATGCTTCAGGTTTAATAAAGCATGACAAGCATCATAATAACATAAggtaaaaattaatgaatctGAATTTTTCACAAGGAAATAAAGGCAGAAGAAATACAAAACCTGTTATTTTTCAACTATCTTCTGAAAATAAGGTACATTATAGGcacagaatatttttaataaggCTATCCAGTGACAAGAAACTAGTTATTGAATGACGGAATTTAAATTTGGCTTCTTTGTAGATAGAGCATGATTCACCATGAACTACTGGTTAAAGTATTATATTTTTGCCAGTTGTCAAGAAATAGATGATAAAGAGATGATAAGCAATTACAAAGTTACATTTTATACCATTAAGTATATCAACATCATGTGGTGCATACATACCAGAAGGCACTGCCTGACAAGAATCACTATGCAAAAGATTAAGAGATAGCCCCCAATACAAATGGCCACAATTGCAACAACTGGAAATGATTCATTTGCTGTAACTATTGCACCTGTTGTTGGCTGAAATATAAGAGAGgaattttacagaaaagcaaaaatgctAAGGCATAACAAAGGGCATTCTGCTATGCAGGTTTCAGCTAGGCAGGCCATCCTGGTCAAGTAGGCTTGCTTAATGTGGAAATGTTGCATAAAACACCCCTTCataaaatagcaaagaaaaaagctaGGCAAGCAAGGAAGCAAGCATGCGAGAAGGAACAGACAACCAGACAGGCATACACATCAGAAGGAAACAGGCAAGCAGGCAAGCAGGCAAGCAGGCAAGCAAACAAGTTGGAAGCAAACAAGTGGGAAGTGAACAAGTGGAGAGCAAGCAAGTGGACAAACaagcaagcaaaaaacaaatcaaacaagaGTTTATGGCTATAGTAGTCTTACAACTTGTGCCCTCTCCTTCTCTAGATGAATATTCTAAAGCAATTACCCTGGGTACTAACCACTAAAGGATGGACAGCTAGTTGGCAGTAGGTCAGACTTTAAAGTTTGGTCTTTGCTGAGAACATGTTCCCCATGTAACAACTTTCCTCTTCATTTTGCCTGTGCATTGTTAAGAATTTGCATGAAGTCTGTGcataataattgttttctgGTTATGTTACCTAAGATCATCCTaccattttttgctttttgcttctgataacaagaaaaaaccaagaaaaagattatttcCAATGTCTTTGCTACAACATTCGTACACGATCTTTCATGGAACTTTcattatatgaaaatttgaattttatggtTCTGGCATTCCCTGTGCAGAAAAAATAGCTTTACAGTCTGGGCAGCGGGCATAATGAATATAATAACTTAGTAGGGGACCTAAAAATGCACACAGTACTATGAGTCTAGTTTGCATccctttattttctttggtaGTAATTTCAAAAGTGTTTGAGGTGCATTAGTCcggagaaaaaaatatttgaagaaagaacaggccttgcccggaaaggcgctcgatcgagcgcgcgcgcctagagcgcacccaaaaaaagccttggagagcgatttatagagcccctcaaaacgtaaaaacaatattaacacggagcaaaataaatttttggaatttgttgaatcaacttgatcaagcataaacaatcttcccaacagaccgcaatattatgatttgcgtaagattaccccttgagaaaaaattcagcaaattcaacgttgggttttcaatatcattttttttctaataaccctctaataaccatcgaggacacaggccatcaagcgtattctccggcagatttatttgattttcgagcaagcgttaatcttctATTGAggtatatattattttcagtttttttaataacttaaaagcgcctgtgcaaatcagcgatcacgtttccgtccaaattatcgcattgcttttcatttgcttttgcaagtagtagatgttctagcgtttcttatagaatggataacatgaaaaaaggaaacaaagttaaatgttcgatttaaagccatgcgctttgatgaagcaatatgtgAAGCTGAACATAACAGTAGTGATACTGACACTGATAAAAGCTCATCAATGATGGCAACttacatatctagaaaaatctgaacaattttgcgattttgttttattatatttctatatttatattaacatagtgtttgttgcatgttttgttatttcatattatggtgctttctggtatcaccgttgaatttcatatttaacattCTTCCGAAGCTTTCAATATGAAGCTCTCGATCTCCTAAAGCTCtcgaaggatgctctcaaggaaatttacttagaggtgcgaaatagagcgcctagagtttctaaggggctctttttatggagcaccttcattttacttagagcaaggcctgaaAGAAAATGCTGAGTGCTACACCCCTTGGCAACACTTGCAGAATCTGCTAAAAATCAGTTTCTGCTAAAAATCTCAGTTTATATCTGAAATGAACTAAGATTTTTAGCAGAAACTAATAAGGCTGCATGCTGTACCTTGTAGATTCTTTAGTTAGACATGCTGGTTTAAGCAGGGCTCGTAGTTCGTTTAAATCGGTTTTGATGAATTGGTTCTAGGCCAGCCTTGAATTTAGTCGCGGAGGCTTTGACCTGGACCACTCTTAAAGCATATGAACAGCTCTTAcgataaaaaattgtcataattttattcatattgtAAGCAACACTCGATCGATTGCGCTTCACAAAGCAGTTCATTTGTTGACTGTGGTGTTTGATGAACACTTACAATTAATGTTGGCGCCatgatgaaaatttacattCGCACGGTCCATAAcactttgaataaatataacaTCACGCTGGACAAAAACCTGTTCTGCAGCAAATCAACGATATTCTTGGCTTTTAAATTCCAGTACCCTGATGCCAAAAACAACTCAAACTTGATGCATTGCAGCATTGTGGAGCCATAGCAATAGCAATAGCTACTTGCAATTCGAAGTCTCCTTCTGAGACCGAGTTTGAAAGACGATCTCAAGAAAAGATGGCGGCAACAACAAATTTGACAACAACGCTTTGCAAGTCCTTCAAATACCCGATTATTGTAATTCTTGGAAGTACTGGAGTAGGAAAAACAAAGCTAAGTATAGAACTTGCTAAAAAAGTTGATGGGGAGATAATAAGTGCAGATTCCATGCAGGTTTACAAAGGTTTAGACGTTGTCACTGCTAAAGCTACCCAGGCAGAGAGAGCAGAAATCAAACACCATATGATCGATATGGTAAACCCACTAGACAGTTTTAGCGTTGTAGAGTTTCGAAATATGGCCTTGCCAATCATCAGTGACATATCGTCAAAAGGAAAAGTGCCAATCATTGTTGGTGGAACAAACTATTACATCGAATCTCTTTTATGGAACATTTTGGTTACGGAGGATTCAGGGAACCAAAAAACATTAGCCAGCGATTTGGAAGACACTTCTCCAAATCTCTCCAAAATTgactttgaagttttgaaagacCAGTCAATTTACAAGTTTCTTCAAAGTATTGATCCTGTTGCTGCATCCAAAGTTCATCCAAATGACAGTAGgaaagtgaaaagaaaactggaaATATGGAAGGCAACTGGAAAAAAGCCAAGTGATGTAATTGTTGAACAACAGTCTTTAGATGGAGGCGACCATCTTGGAGGGCCTTTGAGGTTCACAAATTCACTTGTTTTC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01715 all species →	IPPT	IPP transferase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR018022 all species →	Family	IPP transferase	Interproscan
IPR039657 all species →	Family	Dimethylallyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11088 all species →	TRNA DIMETHYLALLYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan
GO:0052381 all species →	Molecular Function	tRNA dimethylallyltransferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006400 all species →	Biological Process	tRNA modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065070568.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.