Gene detail

Detailed information of XP_065070572.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_979:6419071...6457338
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135695413

ATGGATGCGACAAGAATATTAACAATAACAAGAAATATTGAGAACCTGAGCGTACCGGTTAAATCATCGACAGGCTTAAAGTATACTGCCGTGGCACTTGCAAAAACTTTGGTTTGTCTTGGTACAAATACTGGAAGCACATACATATTTGAAAATGAAACACTGAAACTGATTAAATTCATCGCAAGCAAGGGAGGAAGCATTCAAATTCTCAAATTTTCAAAAGATGAAAAACTTTTAGCCATTGTTGACAGCATTGGCATTGTCACCTGCCTAGAAGTAAATGAGGAGAAATGTGAAATTTCTGTTGTCAAGGAAATTGAGGATCACAAAGGAGCAAAAATCACATGCCTGTGCTGGGATGATGACAGTGCAAGATTGTTTGTTGGTGATGAAAGAGGAATAGTTACAGCTTTTATTGTTGCTGCATTCAAAATGCCAGCAGGGAAATTCTTGTCAAAGAGTTCCATTGAGGTTGTTGTTAAAGGAGAGTCTCCAATAGTTCAATTGGATTATTCAAAGCTGAAACTTTTGGTTTCAACAACAAACAGAACGCTCCTTTGCCTCACTGACAAATCAAAATATCAACAAATTGGGTCAAAACCAAGAGATGGAAAGTTTGGATCGTGCTTTCTACAATATGTGAACGGAGAATTTCCTGTAATTTACGCAGCCCGGCCTGGATCAAGGTTGTGGGAGGTTGACTTTCATGGACAAGTTCTAGCAACACATCAGTTCAAATATCTTCTTGCCGTGCCACCGAAGAAGATTCATGGTTTACGAGAAAACAAAGATTTTATTAGCGAAGAGAATTGGGACAAACCACAGGCTGTTCCTTTCCCGAAACTTATACCAATTTGCAATCGATACGTGGTGACATGGTCTCATCTTGGCTTGTATATCTTGGACCCCAGCCTTGGAAAAATTGCTGGATGGTATGACGAAATCAAAATTAAAGACATTTCTTGCAACCAAGAAAATATTTACATTATTTGTAATGATGGTCAAGTGTTTGAAGTTGCATACTTATCCGTGAAAGATTGTCTCAAAAACCTCATCGATATTAGCGAACACACACAAGCAGCTAAGGTGGCTTTACACTCTCGGGATGAAATATTAAAGAACGTTGAAAGTTTCTTAAGCATTGACTTTGAAGCCGTTCAAGAAAAGATTCAGGAGTCAGACGAGTCTGCAGCCAAGGAGGAGCTGCACAATGCTTTAGAAGACTTTATACGGCAACTACATGCAAGACATTTCGAAGTGCGAGCCGAGATTCAAGAGCGATTAAACCGAATACCCATTGTCGATGAATCGTGGACACCTTGTGATTCTGGTGTCGAGGACAACGATGACGTAAAATCGAACCAGAGTGAGGTTATCAGCGAGACGAGCAGCAGATTGAGTTTCACGCGTCTGCCTCATGTTGATGTGGACAGGGTTTTGAGGAAGGCGACCCGCGCGGTGGTGAACAAAGTACTTTCATCAGGGTTTATGAAAAAAGCCTTAAATGAAGTACTAGACGAAGATTTGCCACGTTCTTTGAGGACACGGAATAAAACAAGTAATTTGGTAACGAGGCAGTCTCCTGTGCAGGTGGATGGAAACAAAAGCTTTTTAGAGGAGGAAAGTCCGCAGAGCACAAGTGAAGGATTACATCAAACAGAAGCAGATACAGAAGGGAAAACAGAAGAAGCAATTATAGACATGGGAAACACAGAGATGAAAATGTTTCAGGCTGCCATGGACGATGAGAATTCGCCAATTACTCAAGATAAAAGACCAAATGGATCAAACAACAGAAGAAGAAGAAAGGCGAAAATAGTAACTGTTGATTTTGCATCACCGGAAAAAGATGACATTTTCAAAATAGCAACGTATGAAACTGTGAATAAATCACATGCCCGCCGGTTGCTGTCCTCTGATTCTGCAAATTCTTACTCACCTCTTGCAGACATAAAACGACTATCTTCTGCACCGCATGATGTGAGAAGTTTAGATTTTGATGTTGAGTCAGCAGCGAAAAGCACCCAGATTCCGGCGCAGGAGTCAACTGAAATGGCTGAACCGCACCCCTTTTCCCGCGAGAATATAATGGAAAAAGCAAAGAAGCTTGTTCGCAAAGTTATGCAACCTGGAGTCCCAGTTCCGTTTGATGTGAAAACTGAAAACAACAAAGCATCAGATGAAACACTGGTGGCAGGCCGTGATCATCTCAACTGCTTGTTGGTTTCAGAGGATGCAATGAAAATCATACCAAAGTTTGTTGATGTCACTGCTGTGTGCCGGAACAAATTACGGGATTCGCGTGTCTTGTTCAACTCAAAAACTGTCAAGAAAATCCTTCAAGACTGGGCTGAAAAACTAAATGACACCGTGAAGGAGTTTTCTTACGCAATGGCTGAAAATATAAAAAAGAAGAACACAAAACATATTCTGACGAAATCAGACACTGAGTTTCTCCTTATGCGGACACGTGAAGAATTCTTCCAGAATTTAGGTGCTGCGTTTAGTGAAGTTTCTAATTTAGCTGTTCTTTGTTATGAGGCAGGAATTTTCCCTACCTCTTGTTCAGATCTTGAAACCCTGGAAGCGAGTTTAATCGAAAATGAGACTACTTTTGAGGAAATCAGGAAAAAGGTGAACGAGATTCTAAACCAGGATGATAGTAAAATACAACGACCCGATGTTGACAAGGAATTAAAGAAGGATAAAGAGTCGGATAAAGTTACTTTATTGTCACTTGCAAAAAGCAGTGATGAGAAACAGTTGGATAAACTGTTTTTTATAAGCGACGAGGAAGTTAAAAATTATTTGGGAGATGACGATAATTCAAATCTCTTGCAAGAAAATTCAGATGATACAAGTCAAATGTTTGATAAACAGTTTGGTGGTCCGTTATTAGAAGATTTCGACCAAGATGCTTTGACGGAAGCTTCGCATGACTCGATATATGATAACAGTCAAGGACAAGTTTTGTCAGTCGAGGCGCTCGAAAATCCTTTTGAAACTAGAAATAAATTTGACACGGGCCATTTGCACGATGCACCATCAGTCGTTGAAAAGAACCGGAATAGTGGGACTGTTCAACAGGATGAGCCAAGTCATTTAGAACCAGGGTCTCCTGACGGCGACCGCCAGTTCTCAGAAGGAGCCAAAAATACACAAGAAAAATCGATCAAGCCGAAATTAAGCGATGACGCTTTTGAAACACAGCAAAATTCAAAAGGCAATAAGGCTCACGTTTGCTTTGAATCAAATGAACCCCATTCCGGTTTGTCGTCGTCGTCAAAGAATCAAATTATACACAATCAAGAGACGGAGCTAGCAAAATCAATTCCGCGGACATCAAGTTTCAGGGACTACGTTGAAATAGCTGTTCCGAGAAAAATCCATTTTTTCGATGAAGAATTAGAATGGATTTTATGCACCTCTGAAAATCCATCAACGTGTGAAAGTTGTCGCGAAGATTTTTGTCGTGCGTGTTTTGTGCTACGGTATTCTCCTTTGTTGGACTTGACTAAAATCCGGACTGTTTTAAACTGGAAACAAGGATGTAGATGGAGAACCTGGATTGCATATCTAATTCATCTTGAAGATACGGTTCCTCCGCAAGAATTGAAATCTGCCATTGCTGATGAAGATTTCGGAAAAACTGCTCGAATGATGCATGATTCTACAAGTATTGAACAGTTTCTTTCTTGCGTCAGGGGATTGCTACCATCATCTGCTGGCCTCGTTTTTGATATATGTACCGAAAAGCACATTAATCCATGGGAGGTTTGCTTGATATACATGATGAATCCAAACGACGTTGGAGTCTCAAAAGACTTTCTTGGTTATGTAAGCACCATCAAAAGGATGAGGCCCTCTTCGAATGCTTTGGATGACACCACTGTTGCGATGACGCTACTTTACTGCGCTCTTAAAGAAACCAGTGCAAAAAGCAACATCAAAATGCGTTACTGTGGCTGCGGAGTCGCGCGGGAAGGTTCTCATTGGTTACCCTGGAAGGAGAAAGGCTTTATTGATAACGTCTTAATGAATGCTGTGAATTCAAATGATTGTGGAATAGTTTGTCGGATGTTCGAGCTATGTCGAAAATATGGGTACTGGGTTGGTTGCATCAAAGTGCTACGTCATCTTGGACAACACAAGCAAGTGTTTGAAGTCATGAGCCAGCTGGGAGACTTTCGGCTTTTGGACGATTACGTCAAAGCCGAGACATTCAGCATACAAGATGATGACCTTAAACACCTTTGCAATTTGAAGTACCACATAAGAGACGGTCCACACAAATGCAGACCAGCTGTTCCGGATTTTACACGAACCATAACTGATGAATCACTTGCAAGGCTTCTTGTAAGGGAACTGGGCCCTAAAGAAGCACTAAAGATGTTGAAATATTTTAAAGAAGAATTTGTTCCTTCAAGTCAATTTTATTACGCATGTTTGCAGATATCCGAAAAAGAGCTTGAGCAAAGGCAACTTATATTGAAAATGATGGAAAGCCTGAATAGCCTTTCTTTCAACGAAAACAAATCGATGCTTCAAACACAGATTGAGGAATTGAAGAACAGAGAACTTAGTGGTGATTTGCCCAGTGATGAGGCATTGGTTATGGAAGATTCGTATTCGACGGATTTGCAAAGCTCTAACCATTGGGGAGTCAGCCTAAATATCTCGAGTTCGCATTGCCCAAGCTGTACCCTACCACTGTGTATTCATGGAGCATCTACTAATGCTGGTTTGGTTGTTTTCGACTGTGGCCACACGTTCCACAAGCAATGTATTCCTGAAGAATCTTGCATCATATGTTACTATAAACTTGACAAGTTTATCCAATAG

Transcript

rna-XM_065214500.1

ATCTCATTCTGGGACCACAGATTTGTCTTGTGACTTAGCAATGGCGGATGGAAACGATGCAAAGAAACATTGCAAATATGGTTCGATGAAAAGGCTGTTTACCTGAACGATGGATGCGACAAGAATATTAAcaataacaagaaatattgAGAACCTGAGCGTACCGGTTAAATCATCGACAGGCTTAAAGTATACTGCCGTGGCACTTGCAAAAACTTTGGTTTGTCTTGGTACAAATACTGGAAGCACatacatatttgaaaatgaaacactGAAACTGATTAAATTCATCGCAAGCAAGGGAGGAAGCAttcaaattctcaaattttcaaaagatgaaaaacttttagccATTGTTGACAGcattgGCATTGTCACCTGCCTAGAAGTAAATGAGGAGAAATGTGAAATTTCTGTTGTCAAGGAAATTGAGGATCACAAAGGAGCAAAAATCACATGCCTGTGCTGGGATGATGACAGTGCAAGATTGTTTGTTGGTGATGAAAGAGGAATAGTTACAGCTTTTATTGTTGCTGCATTCAAAATGCCAGCAGGGAAATTCTTGTCAAAGAGTTCCATTGAGGTTGTTGTTAAAGGAGAGTCTCCAATAGTTCAATTGGATTATTCAAAGCTGAAACTTTTGGTTTCAACAACAAACAGAACGCTCCTTTGCCTCACTGACAAatcaaaatatcaacaaattgGGTCAAAACCAAGAGATGGAAAGTTTGGATCGTGCTTTCTACAATATGTGAACGGAGAATTTCCTGTAATTTACGCAGCCCGGCCTGGATCAAGGTTGTGGGAGGTTGACTTTCATGGACAAGTTCTAGCAACACATCAGTTCAAATATCTTCTTGCCGTGCCACCGAAGAAGATTCATGGTTTACGagaaaacaaagattttattaGCGAAGAGAATTGGGACAAACCACAGGCTGTTCCTTTCCCGAAACTTATACCAATTTGCAATCGATACGTGGTGACATGGTCTCATCTTGGCTTGTATATCTTGGACCCcagccttggaaaaattgctGGATGGTATGACGAAATCAAAATTAAAGACATTTCTTGCaaccaagaaaatatttacattatttGTAATGATGGTCAAGTGTTTGAAGTTGCATACTTATCCGTGAAAGATTGTCTCAAAAACCTCATCGATATTAGCGAACACACACAAGCAGCTAAGGTGGCTTTACACTCTCGGgatgaaatattaaagaacgttgaaagtttcttaagcATTGACTTTGAAGCCGTTCAAGAAAAGATTCAGGAGTCAGACGAGTCTGCAGCCAAGGAGGAGCTGCACAATGCTTTAGAAGACTTTATACGGCAACTACATGCAAGACATTTCGAAGTGCGAGCCGAGATTCAAGAGCGATTAAACCGAATACCCATTGTCGATGAATCGTGGACACCTTGTGATTCTGGTGTCGAGGACAACGATGACGTAAAATCGAACCAGAGTGAGGTTATCAGCGAGACGAGCAGCAGATTGAGTTTCACGCGTCTGCCTCATGTTGATGTGGACAGGGTTTTGAGGAAGGCGACCCGCGCGGTGGTGAACAAAGTACTTTCATCAGGGTTTATGAAAAAAGCCTTAAATGAAGTACTAGACGAAGATTTGCCACGTTCTTTGAGGACACGGAATAAAACAAGTAATTTGGTAACGAGGCAGTCTCCTGTGCAGGTGGATGgaaacaaaagctttttagaGGAGGAAAGTCCGCAGAGCACAAGTGAAGGATTACATCAAACAGAAGCAGATACAGAAGGGAAAACAGAAGAAGCAATTATAGACATGGGAAACACAgagatgaaaatgtttcaggCTGCCATGGACGATGAGAATTCGCCAATTACTCAAGATAAAAGACCAAATGGATCAAacaacagaagaagaagaaaggcGAAAATAGTAACTGTTGATTTTGCATCACCGGAAAAAgatgacattttcaaaatagcaacGTATGAAACTGTGAATAAATCACATGCCCGCCGGTTGCTGTCCTCTGATTCTGCAAATTCTTACTCACCTCTTGCAGACATAAAACGACTATCTTCTGCACCGCATGATGTGAGAAGTTTAGATTTTGATGTTGAGTCAGCAGCGAAAAGCACCCAGATTCCGGCGCAGGAGTCAACTGAAATGGCTGAACCGCACCCCTTTTCCCGCGAGAATATAatggaaaaagcaaagaagctTGTTCGCAAAGTTATGCAACCTGGAGTCCCAGTTCCGTTTGAtgtgaaaactgaaaacaacaaaGCATCAGATGAAACACTGGTGGCAGGCCGTGATCATCTCAACTGCTTGTTGGTTTCAGAGGATGCAATGAAAATCATACCAAAGTTTGTTGATGTCACTGCTGTGTGCCGGAACAAATTACGGGATTCGCGTGTCTTGTTCAACTCAAAAACTGTCAAGAAAATCCTTCAAGACTGGGCTGAAAAACTAAATGACACCGTGAAGGAGTTTTCTTACGCAATGgctgaaaatataaaaaagaagaacacAAAACATATTCTGACGAAATCAGACACTGAGTTTCTCCTTATGCGGACACGTGAAGAATTCTTCCAGAATTTAGGTGCTGCGTTTAGTGAAGTTTCTAATTTAGCTGTTCTTTGTTATGAGGCAGGAATTTTCCCTACCTCTTGTTCAGATCTTGAAACCCTGGAAGCGAGTTTAATCGAAAATGAGACTACTTTTGAGGAAATCAGGAAAAAGGTGAACGAGATTCTAAACCAGGATGATAGTAAAATACAACGACCCGATGTTGACAAGGAATTAAAGAAGGATAAAGAGTCGGATAAAGTTACTTTATTGTCACTTGCAAAAAGCAGTGATGAGAAACAGTTggataaactgttttttataagCGACGAGgaagttaaaaattatttgggaGATGACGATAATTCAAATCTCTTGCAAGAAAATTCAGATGATACAAGTCAAATGTTTGATAAACAGTTTGGTGGTCCGTTATTAGAAGATTTCGACCAAGATGCTTTGACGGAAGCTTCGCATGACTCGATATATGATAACAGTCAAGGACAAGTTTTGTCAGTCGAGGCGCTCGAAAATCCTTTTGAAactagaaataaatttgacaCGGGCCATTTGCACGATGCACCATCAGTCGTTGAAAAGAACCGGAATAGTGGGACTGTTCAACAGGATGAGCCAAGTCATTTAGAACCAGGGTCTCCTGACGGCGACCGCCAGTTCTCAGAAGGAGCCAAAAATACACAAGAAAAATCGATCAAGCCGAAATTAAGCGATGACGCTTTTGAAACacagcaaaattcaaaaggcAATAAGGCTCACGTTTGCTTTGAATCAAATGAACCCCATTCCGGTTTGTCGTCGTCGTCAAAGAATCAAATTATACACAATCAAGAGACGGAGCTAGCAAAATCAATTCCGCGGACATCAAGTTTCAGGGACTACGTTGAAATAGCTGTTCCGagaaaaatccattttttcgATGAAGAATTAGAATGGATTTTATGCACCTCTGAAAATCCATCAACGTGTGAAAGTTGTCGCGAAGATTTTTGTCGTGCGTGTTTTGTGCTACGGTATTCTCCTTTGTTGGACTTGACTAAAATCCGGACTGTTTTAAACTGGAAACAAGGATGTAGATGGAGAACCTGGATTGCATATCTAATTCATCTTGAAGATACGGTTCCTCCGCAAGAATTGAAATCTGCCATTGCTGATGAAGATTTCGGAAAAACTGCTCGAATGATGCATGATTCTACAAGTATTGAACAGTTTCTTTCTTGCGTCAGGGGATTGCTACCATCATCTGCTGGCCTCGTTTTTGATATATGTACCGAAAAGCACATTAATCCATGGGAGGTTTGCTTGATATACATGATGAATCCAAACGACGTTGGAGTCTCaaaagactttcttggttaTGTAAGCACCATCAAAAGGATGAGGCCCTCTTCGAATGCTTTGGATGACACCACTGTTGCGATGACGCTACTTTACTGCGCTCTTAAAGAAACCAGTGCAAAAAGCAACATCAAAATGCGTTACTGTGGCTGCGGAGTCGCGCGGGAAGGTTCTCATTGGTTACCCTGGAAGGAGAAAGGCTTTATTGATAACGTCTTAATGAATGCTGTGAATTCAAATGATTGTGGAATAGTTTGTCGGATGTTCGAGCTATGTCGAAAATATGGGTACTGGGTTGGTTGCATCAAAGTGCTACGTCATCTTGGACAACACAAGCAAGTGTTTGAAGTCATGAGCCAGCTGGGAGACTTTCGGCTTTTGGACGATTACGTCAAAGCCGAGACATTCAGCATACAAGATGATGACCTTAAACACCTTTGCAATTTGAAGTACCACATAAGAGACGGTCCACACAAATGCAGACCAGCTGTTCCGGATTTTACACGAACCATAACTGATGAATCACTTGCAAGGCTTCTTGTAAGGGAACTGGGCCCTAAAGAAGCACTAAagatgttgaaatattttaaagaagaatttgTTCCTTCAAGTCAATTTTATTACGCATGTTTGCAGATATCCGAAAAAGAGCTTGAGCAAAGGCAACTTATattgaaaatgatggaaaGCCTGAATAGCCTTTCTTTCAACGAAAACAAATCGATGCTTCAAACACAGATTGAGGAATTGAAGAACAGAGAACTTAGTGGTGATTTGCCCAGTGATGAGGCATTGGTTATGGAAGATTCGTATTCGACGGATTTGCAAAGCTCTAACCATTGGGGAGTCAGCCTAAATATCTCGAGttcgCATTGCCCAAGCTGTACCCTACCACTGTGTATTCATGGAGCATCTACTAATGCTGGTTTGGTTGTTTTCGACTGTGgccaCACGTTCCACAAGCAATGTATTCCTGAAGAATCTTGCATCATATGTTACTATAAACTTGACAAGTTTATCCAATagttattattttatttcagtctaataatttttcttcttgactTTAGTTAAGgcataattttaaattcaaatgtaATATATACAAGTTCTCACAAAGAAGACACAACATGACATTCAAACAGAAGATGTGTGGATCATTTATGCTATGATTTTGCGGAAAGATTTCCTTAAAGAATTGCCTGTCGGCAAAAAGCGACGcttgcattttaaaataacagtTGTTTATATTACAACGACGTTTCGtctctaatttttttactttaaatgcTTTCAGCAATCGTGTTACATGCTGAGGCGGGTCACTTTGAACTCGTCAATCCTCTACGATTCGTTTAAGTGAAAATCTCAAATTACACATAATGATTCGATCAGGTTAAACTGACCTGCCTCACCATAGAATAGCATGACATCGCCCGACGGAGGAGCATGCCAGTTACATCTGTTAAGCGTTCTGTCTGCTGACAGCGCATATTTTTTGCTACCGCTGACCATTATGCGTACAACTATAAAGCAGATCCTACAGATATTTGCCTGTCGTATCTTTaatcattgtttttgtaaGCAAGATTCGTTaactgaatttcaaatttttgataattttgccatttttcatgttaaaagTCAGTTGTtttgattatcaaaaatacttttgttgtaaaaagaaatttactgTTGAATTAATATTTGTAATGATGCATTTTAGAATTAGCTTGAGTTCCAAGAATGACATAGATTTAATTTTAACGTTCTGATGTTTCAATAGCATGTCACTGCTTCATGCTTCATGCTATGAACGGTCTATGTGAATCGagtatttcagtaaaaaagaaataagttCATCACTATTTTTATAGAGATAATTATAACCAACACTGCTGCGTTTGTATATTTCAGAAATTCTGAAATCTCTCAGTGTCCATTGATATTCAGTTGTTAATCACcgcataattttttttgcagaaatatatttta

Protein

Pfam domain

No Pfam domain signature was detected for XP_065070572.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23287 all species →	RUBY-EYE2-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0048066 all species →	Biological Process	developmental pigmentation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20191	HPS5; Hermansky-Pudlak syndrome 5 protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.