Gene detail

Detailed information of XP_065070668.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_979:4490738...4494103
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065214596.1

TTAAAACGAAGGCGGAATTATGTAGAGTGAAAACAACTTGGCTTGGTTGAATATTTCAGCAAAGCTTTCAGGATTTTACTCAAGAGAGTATTTTACAGAGCAACGTTGTGCACGAGCAAGTAATGGAGAACTCGAAGAGAAAGGCCACTGGAGGCACTCTAGAGGCTCTAGAAGGCCTACCAGAGTCACAAAGACCTCGTCTAGAGCGCAGAAAGCATCCGAACACCGAAGAGCCGATGGAATTTAGCATCTTTAACGACCCAATACATGGCTCGATTAAACTACACCCAGTCCTTGTGTCCATCATCGACACACCGCAATTTCAGAGGCTTCGAGATATTAAACAGTTAGGTGCTTCATATTGGGTTTACCCTGGAGCCTGTCACAACCGATTTGAGCATAGCATTGGCACTTCCTACTTATGCGGCCTTATGCTCAAGACTTTAAAGGAACAGCACCCTCATTTGATAACTGACATGGATGTTTTATGTGTGAAGATAGCTGGACTATGCCACGATTTAGGCCATGGCCCATTTTCTCATGTATTTGACACGCAATACAAGCAACGTGTTTGCCCAAGCAGCCAGTGGTGTCATGAAAGAGGGTCCATTGACATGTTTGACTACCTTGTACAAGAGCACGTTTCTGtacagaatatttttgaaaaatatggtataggaaaagaagaaatggcTCTGGTCAAGGATCTTATTCTTGGCAAGGACCCAAAAAAGGataatattttgcagaaatgcTGGTCTGATGCACTgaacaaagaaattgagaaatggTTTCTCTATGAAATAGtctcaaacaaaagaaacgGAATTGACTGTGACAAATTTGATTATCTCATGAGAGACTGCCATTATGTAGGCATGAAGAGCAACTTTGACTGTCTTCGTTACTTTCAAAACACTACAATCCTCCCTGTGGATGGACAACTACAAATCTGTGCTCGAGACAAAGAGAGATTCAATCTGTATGAGTTGTTCCACATGAGATGGTCCCTCCATCACAGGGTTTATCAGCACAAGACAACTAAAATAGTTGAGTGCATGTTGGTAGAGGCATTGTCCCTGGTGGATGACAAATTTGAGATCTTTGAAAGCATTGGAAACATGGCCTCATATACAAGCCTTACTGATTCAATCATCTATGAAATTCTAAGAAGTAAAGATGATGATGTCAGAATCAAAACAGCACAGAGGTTGATCAAGCAGTTGCAAAAAAGGCAACTTTACAAGTTTTGTGGGCAGGTTAATGCACTTGTGGGATCTCAGGATGATGACATCATGACATCATCTCAACAGATTTTAGATAAGGGAGAAGATGGCATCAGTCAAGAAATTGCGGCTAAGGATGAGTCATTAAGCTCTGAAGATGTTGTCATAAACATTGTAAATATTACATttggaatgaaaaatgatgacCCAATAGATTCCGTTATTTTCTTCACAAAGTCTCTTGCCCCAGTGAAGCTAAGGAAAGAGCATATTTCAGAAATTCTACCACAGACATTTAGAGAAAAGTACATCAGAGCATATAGCCGAGATCCCAACAAAAGAAAGCTGgttgaaaaatgctttaacGAATGGTGCAAAGACAATGGCTTTGACATACCAAGTGCTCTGGATGGTGACAAGAGTGGTTATTTCACTGATGCCCACAAAAGCTCTGAAATGAAGCAAGAGATGAGGCAAAACAGAAGCATCagtttgcaaggaaatttgaaagttCGAAGAAGTATCTTGAACaaatagttgaaaaaatttttttccaaaacataaCTGAATTATTAATGATAATATATAACAACCATAATAGAATAACTCATACATATCTATAATTCATCCATTTCAAATTAAAGATATCATTAGACTCTTCAACAATAAacctgaaatatttttcccatatatatataatataatatcCCATAAATTCCCACATCTAATATCCCAAAATTTATGCCAATTATTTCTCTAAAGTTATTGcccaaaaatttatcaaggtttgtTTAAAAGAATTCAATGACACTTTAACTCAGCTAGGCATTGATATTACTGAGTTTTGGGTTCTTTCTACTTAACACATCTCTTCTTTCCCACAACAATCTATTTTGGAGTATATATGAAGGTTTTAATGCAGTTAGGTAGGGTGTGATTTACTGAACTTGTAATTATGCTATTATTAACACATTTTTATTAACAGTTCTGGAAAAAGATATTTAACTCAATGTAGAATTGTCCTTGTTCTACAATGCTAACTtatagaatttaaaatattcaagaattaTTGGTATGTAGTTTAACAACCtattgttatgttattttattgaCACATTGCAATATCAATTTgcagttattttattttcattgggagagaatgttttgatgacaacaaatatttgttttagttatttctttgcactttctttttttctacatATACTTATTTTGGTTGTATGAAAACTTAAATCTAAATAAGAAGATAATAACAAAACTGCATTTaggcaattaaaaaatagaggagaaaattgaaaaatctataatatagaattttgaatttaccTTACACAAATAAAGGTCAAATATGTAAATTAGTTAAAAAcgtagcaaaatttttaagttcatttttcttttgaagactTGGTGTCTGTTTAGCCTGAAAGCGTacaatttctttaacaaatttgttttacctgttaaaataaagattaacAAAGTAAGTTAGAAAGTAACTTCAGAAACGTTAAATTGAAGTATCAGCGTTAGCTTGAACTTTAATACGATATCTCTGAAGGAACTATCTAGGAGGATATATGCCAAAGTCCTTGTTATACTTTGCTGTAAACAATATATGTAATTCAAGTAGGTGTGATCtttatgctaaatttttgGTGAAGTCGAGATTCACTTGAAATATCGCAGTgctagaaaatgttttagctGAAGTCTGTTGTTCGAGAATTGCTCGTCTGAAAGTTGTTTCACTAAACGTTTTGATTGACTACAATTGAAATAATAACTAATGCTAATTACCAACCTGTTCAAATTGTAGCGCATCCCCTGTTACTTACTATCTGTTTCGCATCTGTGTGCTCCTAAACCTCCAAGAATTGTTTTCAAACCATGTTCGATCTTGTTCATTGCTTTCTTGCTATGAAGAATTGAGATACTTCTCATATTGATTTACGTAGCAATAACAGAGAGCCTGCCTTTCAACTCCTAAGTTTGCGTAGGGTATTTTTAACAATATGCCTATCAGGAAACAGCGAAGAGACTGAAGTTTAACATTATCTAGATacgaagaaaattaaaatgggATCAATCAAGACCAAAGAATGTGATAATACTTACCATCTTG

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001435 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19276 all species →	HD_assoc_2	HD associated region	Family	Interproscan
PF01966 all species →	HD	HD domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003607 all species →	Domain	HD/PDEase domain	Interproscan
IPR006674 all species →	Domain	HD domain	Interproscan
IPR045509 all species →	Domain	HD-associated domain	Interproscan
IPR050135 all species →	Family	Deoxyguanosinetriphosphate Triphosphohydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11373 all species →	DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006203 all species →	Biological Process	dGTP catabolic process	Interproscan
GO:0008832 all species →	Molecular Function	dGTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22544	SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1	EC:3.1.5.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.