Gene detail

Detailed information of XP_065070684.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_979:189651...193361
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065214612.1

TCTTAATTTCGTTAGACGGATAAGATTATCACCAATATATGTATGttaatttcaatatattattataaatctaacttgaagaaaaacgtaaatatttcaaattttcgcgtagaataagaaaaagagTGCACATGAGAATTCGCGCCAATTTCAACAACGACAACAACATTTCATAATGTTACAGCGAGTGGGATTTGCACAAACAGCAAGGTggactaaaatatttttgtactGACATTCTTCGTATTCCGCACCAACACCGCGATGTAAACACGACGTTGATCATCACACGTGAACTAGCTTGAAAACTTCTTGAATAAAATGACGGATCTCAAGAAGGACTCTTCGTTGGCCTTGGAAAGATGTCCAGAGCACTTGCCCCTCGAGATCCTTGTAAGAATATTTGACTTCCTTCCTGGAAAATGTCTGCGTGTGTGTAGGCTAGTCTGTAACACCTGGAAAGTGGCAAGTAACATTGCACTTTCAAAAGAACATCGGCAATGCCCTGTcggcaaaatatttttcgtttGGTTACCAACGAGAGCAAGCAAAGAATCGTCGTATCTAGAGCCAATCAAGGAGTTCTTGGCTGAAACGATGATTGATGTTGGCACagcaataattttaaatgaaatttcttgCACAATGAATTATGACAGAGCACTTTGCCAAAGCCTGGTAAATGCTATCGATCTCCAGGGCCAGACAGAGAGTATTCCCAATAAAGTGAATGTTATTGGTTGCACCGTGAAATCAGCATTTGGACCAAGAAACGCAGTCGCACTGAAAAGCACAATACAGAATAGTTTAGAACGTGTTAATCAGTTGTATTCAGCTGGAGTTCTTCTCATTCCTAAATCAGACAAATACCTGATCAGAAACTTCCATATCcctatgaagaaaaaatatgaaatgataaaaGGATTTAAACACTTTCTGCCAAGAGCTTCCAAGGATACTGCacttgtatttttgtttattcatcCTGTGACATTAGGAAGATTGTCTCATTTAATTGATGCAATACGGAGagtttattctgaaaatacTTGCATTGTTGGAATTTATTCAGAAACTTGCATATACAGTGGAAAGTTGGTAACGAGCAATGAAATTGTTGGGCTTGTTTTCAGTGGTGATGTTAAATGCTTCTCAACTATAATTGACAAGGAAACTTTCTCTGGTGAcccaaaagaaaaagtaaaacaattaTCTGAAATGTCAAAAAACATTCCTGATGAAGAAGACTAtgcaaaagttattttcatttttgcccCACCGTGCATTGTACATGAGAAGATGCTTTTATTCCTTGCTGCCATAAAACAAGCATTTCAAGGGGTGCAGGTATTTGCAGGCTACACATGCAGTGTTTTTGGTGCCAATCATAACATGGATGATACAAATGGCATAGCTGGTGGAAGAGACTTTTTACAAACACAAGCAGTCTTATTTTGCCTTGTCATGTTAAGCAAAAAGACACATTCATAAGTTTCTGATTTCCACACACCATCATTGAAGCTTGTAAATTTTATAAGTGAAGTGCTATGGAAAAAACAAGAGGGGGTATTGTTCAAATCATTGCCAAACCTAATCAGTAAAAGTACAAATTGGTTACTTGCTGATTTTAATATAGTgggctcagcccccctcccctcaGCCTTTTAGCACTACACCTCTGTTTATAACTAATTGCAATGGGATATATTTTCCTGgtgaattttgttattgaatcagaaatatattttcctggtgaattttttatagtttgaaagttttctgtAATATAATGATAtgtgtatatttattttattatttgcaaattttgatttgttttaactccttttttaaaataggcATAGGAATCAAAGGTTCtggatttgtttttttttcaaaattatgttgcttaacttttttaaGGGAGAAATGACCAATGCATATACTTGTTTTGTTAGAATAGTtatgttgaaatgaaatgtttttgttatacAGTTCATGCTATTTTTCTAAGCAAACTTTCTAAAGTGTGCAAGATTCGCAGTTTTTGTGTTATTGTCAGTTGTTGGACTCTATGCATTCTCTTGCAAcgattttttcgaaaaaaaagtaaaacagtCATTTTGGAAAGCTATGTTAAAGTGCAATGACTCCATGAGCAACTTTGGAATGCTTGGAACAGTTGCTCAAACCCACCCTGTTGATTTTGAGATACTTGAGAAGTTTACATGTCTTTCCACTGGCACAAAAGTCAATGATGCCTGCTTGTAGAGtttctggaaaatttttgaaagaaaagggAAAGTTGCTGACCTTGTTTTAATACAACCATGTTTTGCCAATCATCTTTTGCACATGGCAAGATCAGCTTATGTTGCTTACATAGTTGTGTTGCTGCTGTATTGattgccagggtgcattccatgtaaTTAGACCCGAAGATCTTTGGCGTACACTCAGGCTTTTTGGCGTTCCGAGTGCAAActaatagaaaacatttttggcatacgTAAAATATTCGTTAGTTGGCGtgctaaacatgaagccaCGAACATAGTTAACACGAAAAGATATGacacaaatgttgattggTTCAAGGCAGCGCAACGTGCTTCGATTGTAGAATCACACGTTTTATTAGATGGTTCACAGCAAGTAACAGCGAAGTGTTCTACCCGTGTACGATCATTTTTGCTGTCCCTAGCCAAATAttacaagcaaaaaattttggcacCTCCTTATCTCCATTTGCGCCCCTATTcaggggggcatggccccctGGCCCCCTGCCACCACGCCTCTGCCTAactccttatcataaattgtTATGATAAAGCTGCTGAGAAGCCAGAAAACATTGCAGAAGCTGCAGCTGAATgtgatcaaagaagagtatTTCATCTTACGAATCGGGCATATGCACTTGCTGTCAAATCACCCATTTGGATTgtaaaaaattcctttattCTTCAATATCGTGAAAGAGatatttaagataaaattgatctcCAGCAAGCAGGTAAAAAAAgagcaaagcagaaaaagaagaatctCTGTCCATTGACTTTAAagaatattactttttatcattaaatatatCTAACACTGTTTATGCTTGGATGTTGCTTTACTTGTTACGACAAGTTTACATGTTCGCATTACGTTAATccaaatttaaatgtttcctttatCGTTATCGTTTTTTATGCTTGAGACCAgttattttatacaaaatattctAATTCTGTCAGCAATACTAAAGAACCTTGCTATACAgctatcattttttaaacaaaatttcctagCCTCCATGGATGTCACTTATTAATTTAAGACAAAGCCACGATGGGGTGAAAGGCTTTAAAATAACACAGCTTCAAAGGTTCATGAGCTTTTCAAATCCTTCAAATTCATCTTGttgtttaaacaaaaaaacaaatagataGAGTGTCTTTCTTTTACCATTGGTGTAGATAGAGGAGGTCAGAGGAGGCaatcagtggcgtacccaggaaatttttttgggaccacgcccttcaagCAGTCGCaatgcggggaaacgccctttttgcataATACGGTAAATGGCAAAGCAATTTACAATTGTTATAAACACAAGGATACAGTATACTACATCTCCCCCCAgccaatgagttttacatcgtttttggacatATTGGACATCGTTTCTCGAggaccatattttagaaaagt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08495 all species →	FIST	FIST N domain	Domain	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR013702 all species →	Domain	FIST domain, N-terminal	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan

PANTHER

No PANTHER signature was detected for XP_065070684.1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10302	FBXO22; F-box protein 22	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.