Gene detail

Detailed information of XP_065070786.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_979:2006178...2010539
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065214714.1

TTTGGCGCAtgtcgaaaaatttttgttttgtcaaaattggCGCGAAGAATGTTGGTTTGCCAACGGGTTTTCGTAAACTGAAACGTACCCGCCACTTTCTTATCCgatataaatcaaataattcATCGATCCATTGGAACCCACATGCTTCCGAAATAATTTATTGGAACGCACATGCTTCCAATGAAAAGTGTGCGTCAAGTTAAGAGACTGTCATTGGTTTAGTTTTGTGAAAGAGACCTACATTGCCGATTGCTTTATTTCTGCAAGCTGAACTAATTTAATCAAGTCCATTGACGGAGCCAACACAATGTCATCTCAAAGCTAATAAATCGCAGAAAATGGAGATGATGCCTGACAATATGGATGTAAAAGTGAAGATAGAGACACCACGTGAAAGTAGTTTCAATACTATCATGTCAGATGGTTTGGATTTCAAGAGAGATCCCTACACGGAagacaatgttgataattcaCAAGATTCCTTCCTTGTGGATTTTAATGACCATGGAAATTATAGCAATCAAACATTTACGCAGATAGAAAGCAAAAGTCAGTATCAAGATTCTCCAGGATCAGGTGTAAAATCAAGTTTGCGGAAGCCGCCATTCTCCTTCTCTAAAATGATCCAAGATCTCCTCcttaaacatgaaaaattatctgtgAAAGAGATTTTGACATGGCTGGTACATGAATTCccagaatatttttctatgGAGGATAAAAAATGGAAGGCCAGTGTTCGCAGCTGTTTAACTCAAAAAGaccattttgtaaatgaaaaaccTGAAGGAAAGCCAAGTTGCTGGAGATTATCGGACACAGTGCTAAGAAAACTCAAATCACCTGTTTTTGAATCAGAACATTTAATGAAAGAGAACATTCCTATTGATAGAGGGTCATGGAATAGTGGAAAGTATAAGACAATTGCTCCAAAACTGCATTCCTACTCTGAAAACAGCTCTGATGGAATCGTCTCTCAACCTCCTTGGAGCAGCACTCCTCTCAAGTCTCAAAATATCAACGAAAAACGTCTTTGTGTTTCAGAGGACAAGAATTTGTTCCGCAGAAATGTTGCAGCATTTACAAGACCTTCTACTGGAACAACATTTAGAATAGGGCCAGCTTCTTctacagaaaagaaaaatgttttgttgtcaaaaaataaaagaataaaggGAGAGGAGTATGAACCAAGGTCTAAAGCTCGTAAGAGGCTGTTGGATATTTCAGATTCAAAAAAGCATATTCATTTGCAAATAACTGGAAATAGTTGTACTTCACATCCAGATGGTAAATTTATGAAGCTACATGATGACATTGCAATCAGTACTGATAATGcaagtttcaattttgttggCAATAGTACtgataataaaagaaaaatggaaactttCAGAGATCATCCTGATTACccattttctatgaaaaacaACCTTCCCTCTGATAAGAGTTCAAATGCAGGAGAAGAAAGTCTATCAGAGTCACAAAGTGGCTTTTCATCAAATTGATTCAAGTTTGTGAAGGGAATCCTCAAAAATCTATTAATTGTCATGAAACATCAAGCAATACAGTAGAAGAAGCAGGTCAACACTCTTCTGTCTTTATTCATGAAGAAACCAatgattctaaaaaaaactttggtgGTCAACATACAAAGGAGTGTGATGATGTTTTTGAAGTTCTTCGTAGAGATTCTCAGAGTTCTTGTGACATCCTCAGCCAGTTTACTGATAGCGAATCTTATGACCTATCATGTCTGGACACTCTAGAGTTTGATGGCATCTAGATTAATGATCAACAGTTTAAACAACCAGACATTCCttgaaaaaagtaactttttgGGATTGGGATACTTTTTCCACAACATCAtataaagatacaaaaatcTCTAATGCCTCTTTGAAAAGATAAGCacttttgcaataaaaatattctagatttatttacaaaacaataccTTGTATTTGGCCTTGTAAAATATCTCAGAAAACTGCCTCAGAAATTCAATATAGCCACTTCCAAATAACATTGATCTACTACTAAACCATAAATCAAAATGCCAAAGATTTTATTGAAGGTTCCAAATAAAAACTAGACAAACTCATCTTATTGGATTAATTCAACCTGAGAGTGggaaaaaacatattttcatacaaaagtctattttatttagaggtttttatattctgaaatatAATGCAGATCTTACTCCTTTTATTAGGATTGTGTCATCTTCACACAGGTGTTGTCCTTCTTTGCTCTTGCAGGGTTTTAATaggttaaaaaatttggtatCAGCACCATAATTGGaagattttagaatttttagagGGATATTACtgaaatttttcgattttacAGTGATTATTTTGTAGTTGTTCAATGAAGTATCCTTGAGTTCATGATAATTTTGCACCCTTTTCCCTGTTGTTGTCTTGGTTTTATTATGCCACTTGTTCAAACAGCTTGAATTTTTGTACCAGTGCCTTTCTAAAGATAATTTACCAAGTGTTTTTtctactttcatttttatagcCTCTAGTCAGCTTCCAAACAATCCACTTCTAGtccattaattttttaaatatttttgcaaatgcaccagttaataattttttgctgatttttgaACCCAAGGGTACTTCAAAAACCACAATGTCAGTCATACGTAGTACTGTAGATTTAGCAAGAGAAAGAGCTTCATATTATGATTTCAAATCACTTTTACATGCTACGAAATATACAATAAATCGCGTAGTCTATCTTTGAGTTAATTGTTAACAAATGCACTCCTTTTGACCAAATTGGAACTATAATCTCGGAAAAAAATGGTTGCGACTTTTCAAAGGAAGcatatattttcactttcctttcaaaaataacttttcccctcccccaattcaatgttgaatgcatgattttgaaggagaaatgatagaactacaaatccaatATTGAATCGGGGGAAAGGGGGGATTCGAAATTACAGGGGcaaggtaaagtagaaaattacaaaagttgcattttgtctcaacatttttgtccgggattgaAGCTATCATGTGAGGTCGCCGGTGATAGAAACTGTTGATCCGCGTATAGTTTGAAGGGGTTTGAAGTCGAACGCCCTTAGGGGCGGCTCAACCCAGTCCCCTAATCTTTCAGCTATCTCGAGCTGAGTAATGTCACAGGGGGAAAATATTAGGTAGTTTCAGCGCAGAATTCTCGCGGTTCTTTCAATTGCGTGATGTTTCTCTACATTAGAGTGAATAACTACTGATCCAGAATAtcttatgtttttgaaaattgatgctTTTGTAAATCGTTTTTTGTACTGATTTACTATGTGATTTCCTAAAAGCACCTaagttaaagcaaatacaGTTTCAACCATTTCATCTTGCATTCAATTAACAACTCACTTCTTAGCCAATCGTTGCTATTAATTTATTGATCCGGgaataatttatttcagtGGATTTATTTGTCTTCCTGTGTGTTTCTCGTCGAAAGGTTATATCCTCGTCAAACGTCTAAAGCATAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00250 all species →	Forkhead	Forkhead domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001766 all species →	Domain	Fork head domain	Interproscan
IPR047119 all species →	Family	Forkhead box protein N2/3-like	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13962 all species →	FORKHEAD BOX PROTEIN N3-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000987 all species →	Molecular Function	cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065070786.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.