Gene detail

Detailed information of XP_065071919.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1656:6738089...6754956
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065215847.1

TCTGATGCGTGTCGCTATCATCAGGGGCCCTGGTGATTCAAAGAGGAACAAAAAGCTTCATTGAAAATACATAGACCAATTTGGAATCCCAACACTTGATGCGAATTGCCTTGATACGTCATTCGAAAATTTGTCTCACTTAGAACAACAGGAAGAAGCCCCGGGCGACAGTTTAGTTTTGGTGTCACTAAAGCGGAACGGCGGTCACTCAATCACAAAGAAGCGTTTGTTTCCAGTTTTGTTTATTCCATGACGTTAAAAGATATCAACGGCAAATTTTGCGGTTCGCTCGCCTGTATAAAAGAGACGCTCGCTTTGACGAAGCTAAGAAATCAGATAGTAGAGTGGCTTAAACAAGACAAGAACGAtggcaaaaagaaatcaaattctaTTAACGATAATCTCCATGCTGCTCGTGGCATTTCACGATGCAGTTTCGCAAAGCTGCACGGATTCTGAGCAGGAAAGTTATTGCAAATATTGGAAATCAAAAGGCTACTGCGCTGCTGGTAGCGACTACAGACCATATCTGGAAAGTGTTTGCAGAAAGACGTGTGGCTTCTGTGTCGACCCTTGCCTAAACAAACCCTGCAAGAACGGTGGCGTGTGCCAAAGTAGTGGTGCGACCTTCACTTGCTCCTGTACAAGAAGATTCGAAGGGAAAACATGCGAAAAAGaaaaacccTGTCTCAACACAGCAAAGTATATGGGTTCCTGTGCTAATTGGAAGAAAAATGGCTTCTGCATCCCCAAGTCTCGTTATTATGGTTTTATGCAAGATCACTGTCCTTTGGAATGTGGCTTCTGTAAATTATCGATAATCGAAGTTAAGAAACGCTGCTTCAACTCAAAACAATATGCATCATATTGCCCGTCATGGAAGAGTAAAGGTTTTTGCGACTCTGCTTCAAAGTACTACGGCTTTATGCAAGACCACTGCAATCGTGAATGTGGCTTCTGTAAAGACTCTTGTGAAGACCATGGAAGTGCAGATTACTGTACCAAATACCAACCATACTGCAAGCACTCAATGGTTGGTGAAATAGTTTCAAAAAACTGCCGAAAGACGTGTAAAGTATGTCAAGacACTCCAGCTTGTGGCAAGGGATTGGACAAAGTATTTCAGTTTCGAGTTGTTGGAGGAGAAAATGCAATCAAGAACTCATGGCCGTGGCAGGCTCTCATGTTAAAGAATGGTAAATTTGACTGTGGTGGGACACTTATTGCTAAAAAATGGGTAGTGACTGCAGCACATTGTCTCCGTGGTGGTATAGTGgcaaaagatttgaaaattattcttggAGACCATGACAGaacCAAAAGTGAAGGTACAGAGCAAGAAATAGATGTTTTAAGGATTGTGAGGCATCCAAGTTACAGTTACCAAactaaagaaaatgatatagCACTTCTTGAGCTAGAAAAGGATGCAGTACTGAATAAGTATGTTGGAATTGCCTGCTTGCCAACATCAGATCCTGTACCATATCACAGCTTATGCTACATTACAGGTTGGGGACGTACCCAAGGTTTTGGATCTTCGGCTAACATATTGCAAGAAGCAAAACTTCCAGTAGTCACTAACAAAAACTGTTCTTTATTAAATGGAAAGGAGAGGATCAGTAAAGGCATGGTTTGTGCTGGATATGGCCTAGATTTTAGCCACAACCAATCTGGTTGTAACGGTGACAGTGGTGGCCCTTTTGTTTGTGGTAACGGTGACATTTGGACTTTGCAAGGGGTTGTCAGTTGGGGATCTTCAAGGTGCATATCTAGTGAAAGCTTCACAGTTTTTGCCAGagtcaaattttatattgactggataaaaaagacaattttgtgAGATGCTTTGTAGCAAAATAGTTGTGATGTATCAGATTAGACAAAATTAGGCCCTGTTAACACCATACTGGATAATCAATTATCAAACTACTTTGTAAAGATTATTCTATAACCAATGACCCCAGAAAACAAGAGGGAGGTTATtcatcaaaagattttaataCTTTTTGAGTAGGAAGCAGCTCTTCTTCTACTCATGAAGTTATTGTGGATAGAGTACCATATTTCTCGGCCTCTTAATCAAGTTTCACAAAATACAGGTGAAAAGTCGACCTCAACTTATATGACAGTGACATGTTATCGCTAAAACTTTGTATTTAGTTACATGCTTTTATTCATAAGTGCTACATAAGTGCTGGAATTTTATGCAGAAAAGaattccttttgaaaaaaagattagaACAACTTATAATAGGAGAGAGTGAACTACAGTTTTAGAAGTAAAATGGTTGCTCTCACAAGTTCTGTAATTTTTGTCAGCCAAAActcaaaatgaattgaaacatttttgaatttagaagCAGCAAAAACttgtattaatttttaaacttactaaataaaatatcaagcgTTTGCAAGAGCAAGTTTTGGGGGTCACCTTATTTGCCAGGTATTGCTAAAAGTGTatatttttaaccaaaaatgaagactTAGAAGACTTGGGTTGGTTTACATGCCAAGAAATGcagtaaattattttttcacaaaaagtgaagaatattgtcttgaaatatttaattccCATTAACTTTTATGTTGTGAAGTACAGggtcttgttttcaaaattaaaatgaccATTGTAAGTTTCCTATCTCTATGGTTTTTTGTAAGGCAACATAGTTTGAATCTTAAACTCACATTTTGTGCATTTAAGACTTTTTAATAATGACTGTAAGAAGACTTAGTTAggtagaaaaataaattaggcacaattttgaaacatttttaaaggaCTGTCCTATTGTAAAtctacaaattttcataatttctaaaaaaaattgcagcaaaAACAGTATTGTATGTTTTACATGCCATTTATTAGTTCCTGTCTTATCTGTGAATTTCTGTGTAAGCATGTAGTTTGCAGACTTGAATTTCTGGCTTCAATCAACTTTGTATAATTCCTGTATACCTTTGCTTTTCTAGGGCAAGTAGGTAGTATTTCTAAATGTTGTAATCAGTTATTACTGGAATAGAGCTTTTTCGTGTGTTTAGAACTTAAGAAGAAGGCAACACTAATACTGAATTAGGtataattttcttctcttgATTCATTAATGTTATTAGAATGATAACATTACAttctacaaaatttatatatacaCACAGAAATGCCAAAAACCATTGGGGTCCTAGAAATGTTCCTTTTGTAGATTTACCAAAGGGTATTTCTACCATATTTCTTAGCCCTTTGGTTGATATGCTGACTGAAACTTTGATGGCTTTGGGATGATTTCATATGCCATTGATTCAGCAGCGAATGGCTGTGCCAATTCCCATAAACACTCCAAATGTACCACCTCCTTGCAGCATAACTTTTCCAATGCTTGATACTAATTCTCTCCCACGTAGCCCCATTCTACAATCAAGTATAAatcattataatttttcatattgaattttaaaacaaatatacaaaagCATGTCTCAAGGAAAAAAGCCTGTAATTATAAACTAGAACAATGTGAAGTGGAATTAATAAAATCAGGACAAAAACTTAagattcaaataaattaacactaatgaaatgtttttcttcatcCCAAAAATCAATAAGCATTGATAAAGGTTTCAacagaccagtaaacaaaTTGTTAATCACCAATGCAACCTACAACAATGCAAATACAGAAAAAGATTAACATTGTTCTGTActcaaatgtttcttttcattatctttttttttgttattcattgGTCATAGAAATAAGACTATTAATCACTTGATTCTTTAAACAAATACTCAAGTTAAACATGTCTGTTCCAGGCCATTCAATCTAAATTGTTTCAATGAATAAATGTTTAGCCAACAGAAACTGATTAAACCGGATTATAAAGAAGTGAGGTTTAAAGTATCACTGGTTCCGAATCTATAAAGGAGCTTTTCTCCTGGTAGAATCAAAGAATTCCCAAAACTGCAAAGAAGTAAATTCATATTTGACAGTGAAACTGTGGAGTTTCTAGTGATGGCAACTGTTTCCTTACTTGACCTTGAAACTGCAAGGAGTTTTCTCCTGTCAGTAAAATTCCTGTTTTACCCAGTAGATGTCAAGAAGTGAAACCTTATGGCTAACAGCAGTATTACCTATATTCACAAAAGTTTTCGATTTTGGAGATAATACTGattaaaacagtaaaataaataactCACAAAAGAGATTTTTACCATCTTATAGttctgtttcttcttgttaatcttctcttttaaaatatctacACAAATTTTCTCTAAGCTGGTGacattataaatttatttacttatttgaCCTCAAACTAATTGACCTCACTTTAGATGTTTTTACTTCAAGCAATCCATTAATCTTTGTGCAGCATGTTTAAAAGTTGGATTACTATGGAAAGCAtatgtatttttcttcaagatttTACTCATTTGCTTTCTAAAAACTTCGGCATGGGATAACAAAGGAAGATTGAAATACAACAAGCCAGGTTGTACTTTTTGTGGTTTGCTTTAATGTAGTGGCCTACTTTCTAGagttacaaaaaattaacttattCTGACCCCTTTTTGTATTTGACACTGAGTGCTACCAACATAAACCCCAGGCTTTATACCTTTGTTCCCTGTGTCTCCATCACATTTTACAGCTGCACACATGTCATAGcatagctttttaaaaatgtctacATACATAGCAGATCTTTAAAAAGTGTACAAAACAGCTAAATTGTGTTGCAACATAGTTTGTGAGGAAGAAACAATTTCTGCCAATGTAGGGAGGTGGTCTTAGAGGAGTTGTAGAAAAGGATGTCTTACAGGACTATGTCATTAGACTACTGTGTAGCAAAGGCCTTTTTGGGTGAACAACAGGTACACAAATAAGCAGGTAATCACAACCATGTCTACTGTGCAAGTcttgaattgcaaaaattctgcttgcttaaagaaaacaataaaattatataaaattattgtctcTTTGACTTTATTGCAACCTGTCGTGAAATTTTGGATGCAAGACCGAAAAACGAAGTgctttctttccatttttgcaGCTAAAGACAAAGAATCTCGCAAATTGCACCAACAAATCTACCTTGCTTTCTTATCCAAAATTATCTCCATCCGAAAAGAGAAATGGAATATATTCCCCTTTCGATAAAGCTTATTATCCTTAACTGATTATGTATCTAAGCTCTGTTCGAAAGCTTAGATAGTAACTAAGAAATTATAGTAGATTTCTATACCATAAATCACTATACAGGGGCGGCGTGGGGTGGTATTAAAGGTATTAGTCtaataccattttattttcaaaggaaggcGACTTTGGGTCTCTGAGattgcaggaaatttattttgctttttgtacgCTGCCactttttcacaacaattttatCGATGCGACCAGCTCTATTCATATAGCCAAGCAATATTCGCTTTTCTGTTCGTTGAATGAAAGCTTTCCTAATCCtcattgaaatctttgaaaagtgtAATCCATGCTGTAATCAGCAGCCCTGGCCATGGTATTAGCCTCCAAAAACTAATACACTGCCccgaaatttcttttgtctgttGTGGTCTGCATGACGTGAATTTCTCTTGTTGAGCCATGGTCGAAGAATGGGTGAACAGCAGTCAGgtattagtttttcatttctaatactACGAGGGCCACTGTCAGTGGAAGGGACGGTGGAAAGAGCCCCAGCTCTATTCTAAGGCCTCagcttatagaaaaaatatttctggaaattaactttatgaatttacaaaatgtagcTGTACTTTTGCTAGCAATGCCTTTGGATGGCtaatttgattgacaaaatttagacaCTGAATATAAAGAGCAACagtcatgaaataatttgtttaagctAAAGGCAGttgtaaaagttgttttgtatgaactgtatgttttgtaaaacttcGATTCTATATGATTGTAGAGTCATAGGCAACATTCTCACATTATTTCTCTCGGtttctcaaatcaaatgaTACATCTTACGTTTTTTTGCTGCATTACTCTAAAGTAAATCGCTCGCTTAATCGTAATAGAATCTCATTCGCGGGCCAAAAGCCTCATGGTATTAGAATTAATGGGCTAATACCTTGGGGCTCCATTACTGGGCAGCAAACCGCTGTATCAAAACACGATTTCGCTCGAGTAATTTGCCGCAGCCATAATTCATTTGTATTTCGTAGGACCGATCCTTCACCCAAAACTAGTAGGATGAACTACGTTACCACAGGGTCATCAGTGTCTGGGGGGAGACAACGGGGGCCAGTGCCTTCAAATAAGTTTGTAAGATATGGTATtgccaaaagctattttaaaccATCATATCGAAAAGGTCATTTTGCCCACCTTCTTAAATAAGAACATATAAGCTCCACCCCTGTTAAATAGTTTCAGGACCTTGCAGGGGGACCTTCTTATGTCTTAATTTCGGAGGCTAATACCAATACTTTTCTACTCCCAGCCGCCCCTGTCACTATAACTGTGCTAAAGGCTAAGAGCCTGTCACAGATCTTTGGAGTGACTTCATCCTGGACAGACCACTCTACTGACAGACCACTGTACTGACAGACCACTCATGTCAAGTCAAACTCTAAATAATAACGAGTGTAACACCCAACTGATAGATAATGAATGTCAGAAAAATAGTCTGTCCTTGGAAAAGCCACTCCATACCCAGATTGGAATTTTTGCCTTGTGCAGGGGATAAATCCCCCGCGCACACCAAGTTTCAGCCACTATTGCAGCCGCgcaatttttgctaaattgatTCATCCAGCTGCACAGGATTCTTCTTTAACTGAAAACTTATCTTGTATGTACTTTTTGCTTGTGTGCACATGAGGCTGGTTTGTAAATGCTTATCTTTGGTATATTGTTTTTATCGCCACTAATGAAGTTactaatgtttttctctgaaatGTATACCCAAAAGTTACACTGTATTTTTATGGTATTTGGTCTCAGCcgcacaaaatttttatctgtgCTATTTGCAAATGCGCAACTTTCATGGACATGAAACAGATCCTCCGCGCATCTTTCACAGATTCCATTCTGGCAGTCCATACTCATtgtattttctcaaaaatataaGGTTGTTGTCTTAATTTAAGCTACTGAAAAAATTTCgtctttgcaaacaaagtaTTTCTTCTCTCCAAATAAATTGTCCAAATGATTCTTGAAAGAATTTAGCGTGTGGTCTAGCTGAGCAAGTTAGTTTCCAATAATCATGTTTTTTATCGAGCTTAAAAAATCGAGGAATGCAAATCGGCCCAGCTATAAAAAACAACGAGGAAAGATAAATTCCTTAACGAAAGCCGCCTTTTATTTCTGGAATGAGATCATTAACAaccaaaatggaaaattacagtttttaCGGTTGTTTCTATTGGATTTACTACCTGAGTGCCGAGTAGGTCCCGAAGAGAGCTGCTGAGCTCATGCCAACAGCACAACCAATCATGAATCCTAGCTTCACACGATCAAAGCAAGAAGGCTGCGGTGCTCGTTGCATTTTGTAAACTATATTTCTAGGTAGCTTATGTGCTTCGAGATATGCTCGCCACGCACTAGACCTTGGATCTGTACTTCCAGCATCTTAAACCCGTCTCAATATGAAACAAATTCTGCCTCTTCTCCAGAAAGCCTCTTTTAGGCAAATAACCTCGTAAGCGGCGGGGAATTCCAAATGGCCGTTTGATTTTTATCTTGTGGCAATGCTTGCCCCTTTCCTTTTACGACGATTTCAGACAATAACAAGAGGGACGCGTACAATATTTGAGATGAGGATACCGGACAGATGGCTTGAATATTCTCGGATAGGAGAAAGAATTGCTGGCTCTCCATTCATTTGCTTTAAAACACCTTTGTCAGAGAAATATAGTAACAAATACAGCCATGTCTATGGACTCAAAGAAGATGAAGAGTTTACTCCTGCCCAGCTATGCAGAATATTGACAGCAGAAGGCTACAGACTGGGAATGGTCATTGATCTCACAAATACCTATCGCTACTATGATGGTGTTCAAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR018114 all species →	Active_site	Serine proteases, trypsin family, histidine active site	Interproscan
IPR001314 all species →	Family	Peptidase S1A, chymotrypsin family	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR033116 all species →	Active_site	Serine proteases, trypsin family, serine active site	Interproscan
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR050127 all species →	Family	Serine Proteases (Peptidase S1 Family)	Interproscan
IPR012224 all species →	Family	Peptidase S1A, coagulation factor VII/IX/X/C/Z	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24264 all species →	TRYPSIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007596 all species →	Biological Process	blood coagulation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065071919.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.