Gene detail

Detailed information of XP_065072014.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1656:7977776...7989197
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065215942.1

TAGTAGCTTCTTGGTCGCTAAGATGGTGGACTGCTGGAGCAGAGTGTCGCGATAATCTATATCGACTGAAATGGACAACTGGAACTATCTAAAATTTATGTATTCAGATTCAGaagaaattgaataaattatgGGAGGATATAGTCAAAATATCTTAAGAATGAATGTTGTACGGATACCTTCATATAAAGTGATTGATGAGGCATCCTTCAATACAGAATACTGgcctaaaattgaaaatgcaatcAATGTTATGCTGCACAAAAATCCTGGAGAatcctttcaattttcatatgaGGATGTCTTCAGTGTTGCGTACAAGTGTACAACACAGAGATTCTCAGAGCAGATGCTATTACGTGTGACAACaattattgataaattcaCCTCCTGCTGCCTTGCAAACATCTCTTCATTATCTGGTCAAGAATACCTGGAAAGATTCAAATTCTTCTTAAAACAGTTCTTCCAAGCTGCAGAGGGTATAGCTGCTATTTTCAGCTACATGGATAGAAACTATGTTGTCCGAACATTTGGTAAAAATATGTTGTCCATGATGTATTGGCAATTATCTGAGAAGATTGTCATACAGTCCACCGTATTTGATAATTTACGACAGATCTCGGAGGGTGATTTCGAAGTTGACCCACAGCTTCTGATGTCCATTATCCAAGGCCTCTATACCTTGAGGAAAGATTTTGCAAGCTTCAACATGAAGTTGTTTAAGCGGTTTATTCCAAACATTGAGTCTGCGTCGAACATCGATTGTTTGCCTGCAATGGACGATGAAGTGCTAGCAAGGGAAATCGATGAAAACAAGACAGTTGAAAGAATGGCATATAAGCGAAAGGCTGATGAAGTGATGGAGGACACACAAGCAAACTTAAAGCGATTTGCCAAGGCAAGTTGATGAACGCACTCTGTGCTATGTGTTATGAACTGTGACTTTTGTTATATACTAAACCGGGACAAATGggatgtttattttcattaacaCAGAGTAAGTGCACgttgtaatatttttgtatcaaatcaTTGTGGAGACCACGAGGCCTTGATAACCGAAGGCTTTTAAATGATTTGTTcgcattttcaaaaccttatTTGACATCGTATATTTAAGGCTCCGTGATATGACATTTCTCTTGTGAAAAGGAATGTTTAATTGAGAAATTATATCAGATAGAAcgtgctttttcaaagcaactGTAGTATGTGAGGATTAGTTATCCAGTGcccaaatttgaaattagaaatttgaaattacaagTAGTTTAGATTTAAATCAACGTATTCTCAGGAATGGCTGTTTGTGCCAGTAGCTTGACTGAAATTCTGCACGGAGTTTTTGACTcgcttttgaaattaaagtatGTCGCCCCTATGACGTAATTGATAACAATTTTGACTCTACCGCAGTGGTCAGGCCTGCTGAAACCTCGctgtaatgaaaaaaattgaaatcaggTTCGGGGCCAGAAAGGCCTAGGTACCTCAgaacaaaacttttaaggCACGCCAACATGTAGATGctgaaaatgctttgattttGAGGAAATGCATAGATTAAGTCGTTCTAGGGTTTCCTGGTCCTGATTAAGAATACATTTCACCTCGTATCTATGGTAACGATGACGTCTTAACACGCCTTGATATACTTGTATGTCTTCTTGTACGACATGTACGTCTTAACAGTTACGGCGATATGGGCGCTCAATATTGCAAAGGTTACATTTAGACGAAACTTTGTTTACCACAAATAACTCTTCTACGCTCAGTTTTTCTATCTAGAAAGTTTCTTGCACGTTTTCCAGCCATTTAACATTTCCACatgcaatattttgatatgtcAAAAACAACATAGAAAGAGGCTAAATCGCACATGGAAGCTCGTTTAGTTTTCTCATTATTTATAGCGTTTAAGGTCATTTTACTGTCCCTCGAAGATTTCCCTCCGAAGcgtatatattttattttcactttggAGAATAATGTTGTAATAGTTCAATTGATATTGCAAATGTTTGGTAGGTATTTTATAATATATCGTTTAATGACTTATGTAGTAGCTAGTTTTACAATCTGCTTTTCAAAAGCGTCTTCCTTGTAGCTTGTAATTTTCACTAAATGTGAAGACGTTATATGAAAGGTGTCA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|Cullin · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00888 all species →	Cullin	Cullin family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042652 all species →	Family	CDK2-associated and cullin domain-containing protein 1	Interproscan
IPR001373 all species →	Domain	Cullin, N-terminal	Interproscan
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46636 all species →	CDK2-ASSOCIATED AND CULLIN DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000082 all species →	Biological Process	G1/S transition of mitotic cell cycle	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0045860 all species →	Biological Process	positive regulation of protein kinase activity	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065072014.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.