Gene detail

Detailed information of XP_065072048.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1656:6027930...6090859
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065215976.1

AATATACGATCTTCGATGCAGAATTCTCACGTATTCGGAAACAGAAGGCAGCTGCTGGCAAATGAGGTAGACAGCTGGAGTAGGGACAATTCAACAGGAAACAGCAACCAGGTAGCAGTTTACCAGTCAAGAGCTGTGCATGCACGGTATCACCCATCTTCATATTCGTCAAACAGTGGTGGTGTCAGCTCGTTCCCTCAGCATCTACCTGGAGCAGCACAGAATCAGTGTCAAATGGCGAGTGACATGCTAGTACCAAGTGTCCAGCAGCACTTCGGACCAAGCCAAGTTCCCGCAGTTTATCCTGGTACTCACTACCAATCGCCGCCTCATTTAGTCGACTATCATCCACAAGGCACATACAGTGCCGTTCATTATCACAGTTCCAGCCTACCACCATCTCCTAACATTCGATTCCAATCTTGGCCAGGCCGtgagaataattttcagaGCTATCACGCGACGTCGCACGGGCAACTCCCTCACAACAGTATGGTGGTAGCAAGCGAAAGTCAAAACGGGCAGACGTTATCTGCGTCCAATAATCAAGAATTCGATGATCTTAACTCTTTCGGAAGTTATGTCTACTCAGGCAGGGCGAAAGGAGATGGAAACTCCCCGGCATTTGCAATGCTTACCAACGTTAAATCAAGTCCTAAAGTGACCAGATCAGATTCTTACAAAAGTTCCAGTGGTAGCAGGGATAGTTTGGACAGTATTTCGACCGAAGGTTTATCAACACCGCGAGAGATAACGTCAAATGACACGTTACTTAGCCTGAGGTCTGATGATCCTTACAGTTTTCATGAAATCAAAAGAGAGCCGGATGATGACTCAGCATTCATGGAAACCCCTGCCTCCTTTTCCTTCCCTGCCAGCGATAATGAGGTTTTCTGTTCTGTTCCTGGCCGGCTGTCATTGCTTAGTTCAAATACAAAGTATAGGGTAACAGTAGGAGAAATTCGGCGAAGAATCAACCATCCGGAATGTCTCAATGCATCGTTACTTGGTGGAGTACTTAGAAGGGCCAAGTCAAAGGATGGTGGTCGTAAATTACGAGAGAAGTTGCAGAGGATGGGTCTGTCGTTACCAGCTGGTCGCAGAAAAGCAGCTAATGTTACTTTGATGACTTCGTTAGTAGAAGgAGAAGCTGAGCAAATGGCAGCTCATTTTGATTATCTTTGCGAAGCAGAATTCCCAGGTGCACAGTTAGCTGAGCACGTTGCAAAACAAAGCATAGAATCAACAGACCTTCAGAATAGAAAGAACGCAGTGATTGCAGCCAAACATCTGACAAAAGAACTCCAAGACATGCTAGTCAGAGATCCCTACCCGACATACTCCTCCGAAGCGACATCAGACCTTCCAGAATCTGTGCTGCGAGGACTGAATAGATTTGGGTTGCTGACCCATGGCTTTGGTTCACCAGCAATCAACGCTTctttaaatgcatttcaatCGTATTTGACAGAACTACTGACAATTTATGACAAGGAAATAGCTCAAACTGGAACGTCAATTGTAAGTAGCAGTGCtccaaaaataaggaaaaagaGCTAATCGACACAGATTTCCTGCAATGAATAAACGGTTCAAATATCTAGCTCGTTTCACGgggattttcaaattttttcactcATTACTGCGTTCGGCTATTAGTGTGACCGTATAGCTTTTAGGTTAGGTTGAATTTCGCTGTAAACCTCTTCAGGGAAAACCCAGTGCTTATTTTCTTGGCGTTAACGCGACTAGCGTGGATTATAATTATGTCGAGTATAAGACACTTATTTAGAGAAATCTGGCaatatgaaatttgtaaataaatctCCATGCTTTTATAGCCATGCTCAAGAATTTAAAACTGCTTTGCATCTTCATGTAAACAAAGGAACATGAGTTAATTCTTATAGAAACTGCATCATGTTTTCTCGAGAAAAGCCTAAAGAGGGAAATGAATTACACtagttatttgtttttttgtcctttgttctatattttttttaaaaaaatgcagcaaaatGCGATATTAATTAATCCTTGGATTATGCAAAATACAACAAGCTTACaagatgaaatattgaattcGATTTCAATGTGGAAGTTGCAAAAGAATCTGCtgaacaaaaatgacaaatcTAACTGCTTCAAACCACACGAATTGTTCACATGGTTATTTGAGTCATCGGCTACCAGCAGGCCCATCAGAAGCGTTGGGGGTGGGGTAGGCTAAGATACCGTTTTGCCATTATAGAACTGGTCCGGACACAAGAGAGACACTCGATAAAACGGTTTGGTTGCTTCATAGAGAACGATAGAATAATGCTGACATAGATCTCTTGAGATTTTTAGTCTTGACTAATCGTATTCGAAGCTTTGAAGTTTAACTTTTCACAGTGTATTATCCTAGCATGCGCAAAagtcatgaaaaatatctgTTATCAGATAAAGTCGCTTAGTTATTAATACATTTCAATTCtaattattgttttgtaattcCGTATGAGAAGCTActgcaaattcttttttaaaaactgtatATTTCATCAACATTGAACAATATCCTATAATATATATATGGGAAATGAAACACAGTACAAATTTTATCCTTTTAGCtaaaacaatttcaagttTCTGTTACAAAATAACCTAAGATgcaaatttttcgttttttcgtCGAACATTTTCAAGGGCTTCAAATATCAATGACAATTTTAGGCTCAGTCATCTTCCTGATGTTTTCAGCCTCTTGAGTTAATCGAtatcaaaaaagctttttatcgATTCTGTCAAAAGAAATGCGATATTTCAAGTATATGAAACTGCTTTAGAAACAATTACCTTTATCACTGTATGTCTTTTAAACACTTGGTATGGTTTTTTAATGACGATTTTCGCATTTTAGGCCAACTAACATTAGTTTTCCATCCACTGTGctcatttcataattttacACGTGTTATGACCTCCAGTTAGTCAAAACACGTGACTATACTCTTGAGATTTGTTCTATTGTTGATGAAAtatgttcttttctttcaagaaaccTGGAAACTAACGTATTGAAGAGTAGGCCTTCAATGAACCAGTATTCCTAATAAAAGGCCTAGGAAGTAATCTTGTTTCAAAGAACATGGGCTTCTACATTAAATGCTTCattataataaatttaaacAGATGCTTATTCTTAAGATATGCAACCCTATGACAATGTGGAAATGTATTTCCCCAGGATGCCCTAGTACATTTCTTCTGGCTATACCAATTATATTACAGTTGAAACCAGtgtcatttgttttaaatttggacGCTGTCTTAattattaatgaaaaacttaaaGTTTTTAACGATTTGACAATGCAAACGCTTATTTATGATTAACATCGGTTTTAAGCCATTCAAGAGTAACCTAATAggttgataaattttgaataggGAGTTAAAACTTATAGTCAATTGAATTTGAAGGCCATTCCCGTTAACCTCATATATGCAGTGTATGTGCCTACTTGagttctttttcaatttgagcTCTCTAAGTACGCATACATTTGTTTATTGGTATTGAAGACTGTATACTGACTATTTTTAACATCTgttacagaaaaaattatttctcaaaCCCAGGGAGTGTTAGCAAAGCAAGGGTAACATATTGtggttgaatttttatatcataGTCAAAGGCCTACAATACAAAAGCATTAACGAAGGCTCCCATAGGATATTTTGTTTCCCAGGGAAACAAAGCGTTTGGAGAATTTAATGAGCACATTGTGAATATGGTGTTGTATCAAAATCTGTAAGCCGCAATGGTTTTCCGGTACACCTAATTCTTTCCAAGGTCGGGATTGAATGAAACCTCTATCAAGAAAACTTAATATGCAATAGGGGATCAGTTTTCACCCAAGCATATTCTCTATTAGCCGCTAAATCCACCAGTTTCGATGCTTTTCAAAAAGGTTCTCGAGTTTTACCTATGAATTTGCTTCATACAATTTTAATACGTGCTTTTTTTCAACCGTGCAAGTTTTCGTTGGTCGTCTTGGACCCATTACGGCTTACAGGTTAAAATGGCTCAATATATTGTGTAGCAGACTGCCGCACTCATTCTAGAATATTCCTTAAGTTTTGTATATCTGAACCTGTTTTATTCACGTTTTTATGTGAATTATACAGCATTTGTGCTGACGTATTGCGTGTAAGAAGTATGCAACTTTGCCGTTAAACAGTGTAGAATTGTAAGCTAGTTCAAGTTTACTCTAATGTACTTCCAGTTTTGTAAAACGTAAAGAAACATAGAATTTTGGATTGCgtagtaaatttttaaatgggaAAATACATGAAAGGTTTTTGCATTGACAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03299 all species →	TF_AP-2	Transcription factor AP-2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013854 all species →	Domain	Transcription factor AP-2, C-terminal	Interproscan
IPR004979 all species →	Family	Transcription factor AP-2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10812 all species →	TRANSCRIPTION FACTOR AP-2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0042127 all species →	Biological Process	regulation of cell population proliferation	Interproscan
GO:0048856 all species →	Biological Process	anatomical structure development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065072048.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.