Gene detail

Detailed information of XP_065072115.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1658:2478435...2492976
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135696598

ATGGAATACATTGATGAACAACAGGACTTTCATGGAAATTCTGATTATCATTCTAGTTATGTTGGAGCAAGGTCATTAGAAAGACTTAAAAAGAAGAAATGCTCAAAGGAAAGATGGTCGTCTGAAGAGGATGAAAAGTTGAAGAAGCTGTGTTTGGTCATTGGGACTGATGACTGGAGTGTCATTTCAAGTCACTTCCCCTTCCGGACTGATGTTCAATGTCAGCAACGATGGGAAAAGGTCTTAAACCCAAGCTTAGTTAAAGGTGCTTGGACAAAAGAGGAAGACGAGAAAGTCATACAACTGGTTGCAAAGTATGGCCCAAAGAAATGGTCTCTTATTGCCCAGCATCTTGATGGAAGAATAGGCAAGCAATGTAGAGAGAGATGGCATAATCATTTGAATCCTGATGTCAAGAAGTATGCATTTACAGAGGATGAGGACAAAATCATTTATGAAGCTCATCAAGTTCTTGGGAATCGATGGGCAGAAATAGCCAAGCTTTTACCCGGCAGAACTGATAATGCAATTAAGAACCACTGGAATTCAACAATGAGACGGCAATACGAGCCTGAATACCAGGAAAAGAAAAGAAGAAAAATTGAAACTACAGAAAAAAGAACACCAGGTTGTCACGAAGAGAAGAAAATAAAGCGCAGAATATCGTCAGGGCAATACGAAATTGACTGCAAAGCACCGTTCTCTCGATCATGTGGCACTTTCTTCCCAAACATACAAAAAACGCCGCCAAATACAACTAACACCATCAAGCAATTTACATTAACTGTTCTCGACTCGGGTGATGCTGTAAAGGTCTCAAAACTGACTGATAAGTCAAACTTGGTGGCACCAAATGCTATCAAACTTGAGCCACCTGATCCTGACCCCTCCCTGCTGATGTCGCCGTTTCCAAACGTAAATTCCAGCGATATGTCTGATATGCTTGGAGATGTTGGTATGATCGAACTTCTATCCCCAAGGACAATTAAATCCATGAACGAAGCGGCAGCACTACCGAAACCAAAGCCAGATTTTCATGAGGATGAAAAAGAAAATTTGATTCTCGAAAGACTATCGCGCAATTCCCATACTACTACAGCAGGATGCTCTACGTCTCATATGAGCACGTCAAGTGCACAAACGGAAGTATCGTCAACGTTCCACGAGAGCAATAGATTTACGACACCTCCTGCGATCTTACGACGTAAGCGTAAAGCTCCTAAAGAAGTCCCACAAGCCGCTCAATTCACGATGACGTCATTCCACTGTAGTTTCACGTCGCCATCCAGACAGACACCGCTAAAGCAGCTACCGTTTTCGCCTTCGCAGTTCTTCAATAGTCCTTCTATGAACGAAGTCAAAATGTACACTTCAACTCCAGCGCGAACGACTGCAGGCAGCTCGAAAACGCCACTGTGCACTCCATCGAAGGCAGAATCTGTCACAAAAACACCTTTAAATGAAACTGTAAAGATGTCAAGTGATGGAGAACTTGAGACCCCACGAATTAGATACTCACTCATTAACAAAACACCAAGAACCCCAACTCCACTCAAAATTGCGCTTGAAAAGGTCACCTCGACGAATATCTTGGGTCTCGGATCTTCTAAATTCATCGATATGTCATCAATAAACATTAAAGATGATCCCTCGAAAAGTGACCTTGCCATCAGCAAAGGTACTCCAGACCATGACTATGCCAAAGTACAGGATGTGAGCCAGAAACCTATCAGTCAGCATGCCGCGTTCCGTATGAAAACAGCAACAAGTCTTCGGCGGTCATTATCATTCGATGCACCTGATCAGCTAGATAGAATCCCGGACCAGAATTCTACTGCAGATCAAACATCTACGCATTGTCCGGAGGATACGATAGTTTCTCACGGATTATTCTCTATATCAACGCCAACAAGCACCCCTTTCAAATCCAAGCAAGTAACGGTAATCCCGTTACAAGACCTCATCGACAATGACCAGTTCAAGACACCGTCAAGCAACTTCTTCATTAATGCGCTGCCACTCCAGTCTTCACAAATAACCGACTTGTCAACTATTTCTGAAAACGGTGCATTCAAGGTCCCTTATAAGAAAAGACCTCCCGTGAGAACTCTTCGGTTTCAAGAAACGCCAATCAGAATGAGTTCTATTACACCTGAAAGCTTCCGAACTGTCGCTTGTGGCCAGACAGAGGACCAGAAACTCTTAACAGAGCAGGCAAGGCAAATAATGGCAGAAGTGAAGAAGTTCAGGCAAGCTGCACGCTCATTGCTACTGTGA

Transcript

rna-XM_065216043.1

AGCAACCATTTTTGTGTTTGCCCACAATGCTTTGCCTATCGCCTTGAATCAAGTTGGCGCCTAATCATGAAGGAGGAAATCATGCCGTGATGCGACTTCAATTCGAGGTGATCTGGCAACATGGAATACATTGATGAACAACAGGACTTTCATGGAAATTCTGATTATCATTCTAGTTATGTTGGAGCAAGGTCATTAGAAAGacttaaaaagaagaaatgctCAAAGGAAAGATGGTCGTCTGAAGAGGATGAAAAGTTGAAGAAGCTGTGTTTGGTCATTGGGACTGATGACTGGAGTGTCATTTCAAGTCACTTCCCCTTCCGGACTGATGTTCAATGTCAGCAACGATGGGAAAAGGTCTTAAACCCAAGCTTAGTTAAAGGTGCTTGGACAAAAGAGGAAGACGAGAAAGTCATACAACTGGTTGCAAAGTATGGCCCAAAGAAATGGTCTCTTATTGCCCAGCATCTTGATGGAAGAATAGGCAAGCAATGTAGAGAGAGATGGCATAATCATTTGAATCCTGATGTCAAGAAGTATGCATTTACAGAGGATGAGGACAAAATCATTTATGAAGCTCATCAAGTTCTTGGGAATCGATGGGCAGAAATAGCCAAGCTTTTACCCGGCAGaacTGATAATGCAATTAAGAACCACTGGAATTCAACAATGAGACGGCAATACGAGCCTGAATACcaggaaaagaaaagaagaaaaattgaaactacagaaaaaagaacacCAGGTTGTCAcgaagagaagaaaataaagcgCAGAATATCGTCAGGGCAATACGAAATTGACTGCAAAGCACCGTTCTCTCGATCATGTGGCACTTTCTTCccaaacatacaaaaaacgCCGCCAAATACAACTAACACCATCAAGCAATTTACATTAACTGTTCTCGACTCGGGTGATGCTGTAAAGGTCTCAAAACTGACTGATAAGTCAAACTTGGTGGCACCAAATGCTATCAAACTTGAGCCACCTGATCCTGACCCCTCCCTGCTGATGTCGCCGTTTCCAAACGTAAATTCCAGCGATATGTCTGATATGCTTGGAGATGTTGGTATGATCGAACTTCTATCCCCAAGGACAATTAAATCCATGAACGAAGCGGCAGCACTACCGAAACCAAAGCCAGATTTTCATGaggatgaaaaagaaaatttgattctcGAAAGACTATCGCGCAATTCCCatACTACTACAGCAGGATGCTCTACGTCTCATATGAGCACGTCAAGTGCACAAACGGAAGTATCGTCAACGTTCCACGAGAGCAATAGATTTACGACACCTCCTGCGATCTTACGACGTAAGCGTAAAGCTCCTAAAGAAGTCCCACAAGCCGCTCAATTCACGATGACGTCATTCCACTGTAGTTTCACGTCGCCATCCAGACAGACACCGCTAAAGCAGCTACCGTTTTCGCCTTCGCAGTTCTTCAATAGTCCTTCTATGAACGAAGTCAAAATGTACACTTCAACTCCAGCGCGAACGACTGCAGGCAGCTCGAAAACGCCACTGTGCACTCCATCGAAGGCAGAATCTGTCACAAAAACACCTTTAAATGAAACTGTAAAGATGTCAAGTGATGGAGAACTTGAGACCCCACGAATTAGATACTCACTCATTAACAAAACACCAAGAACCCCAACTCCACTCAAAATTGCGCTTGAAAAGGTCACCTCGACGAATATCTTGGGTCTCGGATCTTCTAAATTCATCGATATGTCATCAATAAACATTAAAGATGATCCCTCGAAAAGTGACCTTGCCATCAGCAAAGGTACTCCAGACCATGACTATGCCAAAGTACAGGATGTGAGCCAGAAACCTATCAGTCAGCATGCCGCGTTCCGTATGAAAACAGCAACAAGTCTTCGGCGGTCATTATCATTCGATGCACCTGATCAGCTAGATAGAATCCCGGACCAGAATTCTACTGCAGATCAAACATCTACGCATTGTCCGGAGGATACGATAGTTTCTCACGGATTATTCTCTATATCAACGCCAACAAGCACCCCTTTCAAATCCAAGCAAGTAACGGTAATCCCGTTACAAGACCTCATCGACAATGACCAGTTCAAGACACCGTCAAGCAACTTCTTCATTAATGCGCTGCCACTCCAGTCTTCACAAATAACCGACTTGTCAACTATTTCTGAAAACGGTGCATTCAAGGTCCCTTATAAGAAAAGACCTCCCGTGAGAACTCTTCGGTTTCAAGAAACGCCAATCAGAATGAGTTCTATTACACCTGAAAGCTTCCGAACTGTCGCTTGTGGCCAGACAGAGGACCAGAAACTCTTAACAGAGCAGGCAAGGCAAATAATGGCAGAAGTGAAGAAGTTCAGGCAAGCTGCACGCTCATTGCTACTGTGATATCCTGACTTTTGTAAATTAACCTTTAAAATATATCGTAGCATACACTTTCAAAGTGGGCGTTCTTAATGTGAAAAGCGTTCGTTATTGCGGCTTTCTCGCAGTTGTTTAATTCGTATGTAAAACAGATGACGATGGCAGGTAAGGTATTGGGTAGTAGTTAAAACTATGGCTGATTTCAATGGCTACGACAGAAATTTTCTCTCCAATTGTCAGGTAGGCCATACTGCAAAGAGTCATTTTCTTTATGGCTAAGTCTGttttaatgatatttgaaaCGGGATGTGGAGTAGTAATTGTCTTTTCAATTAGGTATCGTGGTGATCATCAGAACTTTGATTAAAGCAATAATGTTATGGAATCATAATTTTAAGGAAGgcttttgatttctttatatttttttgaagcaTCGACGTGCCCACCAGATATTTAGCCCTGCCTTAAACCCTATAATCCTTCTTGGAATTTTGGCCTCTTGATCAGAAATTGTAATTAGCCATGTGCAgagaaatgattttcatttgaacAGATTATAATATGAAAGAATGCTCTGTTTCATTTTGGATCATCATGATATCTGATTGGATATAGGATATTTCTGTCGGTTTGATATTTAGCATTACCAGCTTCAAAGGGATTGACTGGAGTATGATTATCCAGCTGtcattttttgacaactttTGATTCATTCAACAGAAACTTGATTGAAGCTTTGATTATAGGATAGCTGATAATTTGATGGTTTGAGAGGATTGTCGAGATTCTTGCATGTACGGAACGTGACTTATGCGATTGAAATGTGTAGTTGATATTAGGTTCTTTCCATATGGCACGTGACTCTGCTTAATATTGGGATAACTAGTAGTATTACATTTCAATGAGATTTTACTCCCGTTGGTGGAATATACAGAAATGTGAAGGGATAACGGGACATGGGATCAGAGAGAGCAGTTTAATTTTGCCTCCTGCACATGAGAGATACCAgataccgtaaattctcgaatttCCCccaaagcccccccccccccattctATGAGCCTTCatccaaaatatttcaaattgataaaCCCCCGGAGGGGGGCTAATTTGAGAGTTTACAGTATTTCAGATGTATATTGGTTAGCCGGTAGCCTGTTGCGGGGAAAAGACATTGTCCTGTAAACGTCTAGCTCCTAGAAAACTCCTGaatagccccccccccccttttgatttattgctttgcttttatacagtttattaattaaaagaaCCGATTTCGTTGATAGATTTAAGGGGGTAAGCCTTGAAATGCGTTAATCATAGTTATAGACATAAGTTGTAAACCTTTAGCCATACCGTGTAAATAAGTGGTATCGAcagttgattgatttttgttgttgattttatgTTGATTTTATGTAGAATGCTGGAAATTGCTTAATGATTTGGTTTGATATTGGTATGTCGATGCAGCCATGTAAGTATTATTAGATACCACAGATACCACTGAAAATACGACTTCTTTCTGCGTTGAAAAGTCTTTGTATGTTATCCTACATCGtatttgttttgcaatatTACACCCATTTATGGCGACATGATTGCTAACGGTTTTTTCAAGTACGAAATAAATATAAAGTAGCTATTCTAGTTATGTTTCTAAAGAATAAACTTTTAAgacaataaaatgtttctttgaaaaaatacgtTGACATTGAATTGTTATGACATTAATGTTCTATACCAAACTACACTTTGTTAATCTATATCATAACATCCCATGCTATTCG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF09316 all species →	Cmyb_C	C-myb, C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR050560 all species →	Family	MYB Transcription Factors	Interproscan
IPR015395 all species →	Domain	C-myb, C-terminal	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45614 all species →	MYB PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21769	MYBL2, B-MYB; myb-related protein B	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.