Gene detail

Detailed information of XP_065072279.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1658:392360...407437
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065216207.1

TTTAACAACAATCAAAATGGCAACTCAAAATGTAGGAGACAAAAGTAACCATTTGCTTGATCAAAGTACAGATACAATGCTGGTTTCATCAGCTAGAGAAAGGACTATGTCATCCTCTATACAGCAGCAACTGGATTTAGATCCGAAGTGGAAGATAGAGCGAAGTAATCTGTTGAACATTGcgaaaatttgcatcaaaacatTGATTGACGCTTCCCTAAAAAATGGTCGAACTTTGAGTGATGATTTCACTCCACTTCATCAATTCTTTGTTGTGATGGAGCATGTATTTAGACATGGCTTGAAGGGGAAACGAAGTCTTCTTGGCACAAGAAAAGATTTCTGGGGACTTCTTGAATCTATGGAGCATAAACTGACAACACTTAAAGATATGATGACAAGCATTAGAAATTTGCCTTTAATCAAGACAAATATAGGAAAAGGCAGAGCTTGGTTAAGGTTGGCATTGATGCAAAAAGTGTTAGCAGAGCAGGTCCAGACATTTATTGAAGACAAGAATGATTTGAAagAGTGGTATGAACAGTATTCAATGATGCTCAACGAGGAGAGCATTGTCATTAGTGGCCTTCTTGTTGGTCTTAATGTTATTGATTGCAACTTTGATTTAAAAGGAGAAAACCTAGATACGGCTactGGTATAATAGATATGAGTTTATATCTGCGTGATGGAAACtatcttgaaaaaacttttgaagatGGCAACGGcGGAGGCACTGATCAAAAGTTAGAAATAATTCTTGATCAGAAAGCTTACTTAGAAGAGCTCAATCGCAGTCTTAATGACTCAGCCTCAAAGCTTCAAAATAGAATAAATGAActtcaagaagaaaacaagCGTATTCAAGATGAGcTTTCTTCgctaaatgaaaaatattcgGGAGTCCTGGACGAGAAAGAGATTATAAAGAGCGAAAATGAAAGACTACAAAATGATCACCTTAAACGCTTGCAGTTGGCTCAAGCAGATATAAACATAGAACGGGAAACATATCAACAGTCAAGAACTGGCCTAAATGAAATGTACCTTCAAATAAAGAGACAGTATCAGACGGAAGCTGACCATCGAAAGGAGCTCCAGCAAGATTTACATGTTCAATTGGCAATGAATCAAGAGAAAGAGGTAGCAATGCGGCTACTCGAGAAGGACGTGTATGACAAGCAAGACACGCTTATTTCGTTACGAAAGCAGTTGGAAGACgtcaagaaaatgaacattGACTTGAACGAGAAACTCAAGaaaaacgTGGAAGAGCTAAAAGCTCGCTCTGTTGAATGGAACAATATGTCAAAGAAAGTACAAAGTCTGGCGATGCAAAACGAAGAACTAAAAAGTCGAATTAGCGAAGCGGACGCTGCGAGGGCGGAGGCGCTGGAGACACTCTCACAAATGGGATTTAAGATGGGAGACATCGAGTCTGAAAGACATACGTTAGAGATGAATTTAAAGATCGAGAGGGAATGGCGCAGTGGTATTCAAACGGATTTAGAACAGGAAAAAGAGCGGGTTAGAAGCCTTGAGAAAGAACTGCTTCAGCTGAAGATACTGCAAGAGGAAAACGTATCACTGAAATCTCAACTGAAAGAAATTGGAGCAAAATACGCTGAGCAGGAGTCTACGTTGGTTGAAATGGCTGATAAACTAACCAAATCTCAACTTCACGTCGACGACATGAAAGAAGCCACAGCAGTTATGAAGgatCAAGTTTGGAAGGATGACAAGTCGGTTGTCAATTGCCAACAGTGCGAACAACCATTTTCTGTCGCGAGGAGAAAGCACCACTGTCGTAACTGCGGAGGAATCTTTTGCAACAGCTGTTCAGATAACACAATGCCGCTGCCCTCTTCAGCCAAGCCCGTCAGAGTTTGTGACACGTGCCTCGACAAGCTGCTCGCTAGGTATAAAGCCAGTTAACATAAACTAATTGCAATGTCACGCAGGTGATGATCCGCACCTAGGCAGCCCTGAATTCTTTGAAATGGAGATAGAGCGCACTACTAGAGggatttttatcaattaatacaaaatttcaatcgCAGTCAAATAGTTGAGTTTAATTTGTATAATTGACTTTGTAGTTAGTTAATGGTACGCAGTTTGTTTTATACAGGGGAATACGTATGAACGAGTTTCTAATTCAGCATATTTGAACACATAACCTGCGCAGTCAATTTGCGAAATTTGAGCTTTTGCTGCCTACTAGCGCGTGGTGATTTTGCCTAGCCTGGCTACGAAAGCCTCAGCTTCATTTAACTCCCAGTTATTTAGGCTCTAGTACCCAGGGTGGATAGATTTTGCCATGAACAATACATGATAAGCGTTGCAGCATGAGTATAAGACTAAATAAGCTAGAATTGGCTTATAAGAAAAGGGTTTGGGCGACCGCCGACCATACATCCTGAAGTAGCTTTTTAGAATCGCAAGCCAAATCAAAGGGTTGGCCTACTAGTAAGTGCTCcactttttgttttaatactTTTTCGTAAGAGTATGGTTTTGAGGGATGTgtactaaatttttttgattttctatgttgttgcaaattgataattgaaaaacaattaacaaaGAAATTGTATCCTACAGAACAATaactttaatatatatattcatatatGGTATTCAAAATTCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan
PF02759 all species →	RUN	RUN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR047335 all species →	Family	RUN and FYVE domain-containing protein 1-3	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR004012 all species →	Domain	RUN domain	Interproscan
IPR037213 all species →	Homologous_superfamily	RUN domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45956 all species →	RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12482	RUFY1_2, RABIP4; RUN and FYVE domain-containing protein 1/2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.