Gene detail

Detailed information of XP_065644078.1 in Hydra vulgaris

Genomic Location: NC_088920.1:35424653...35508780
NR annotation: XP_047130745.1, matrix-remodeling-associated protein 5 isoform X3 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065788006.1

tatatgtatattatatatatatatatatatatatatatatttaaattaaataaaagaaatgccaaataaacaaaatagtactAGAAAGAAGAGCAGAAAATGGAATGGGTTTAAACCATCCTGATTAGAGTTTGTTGGAAGAGTTTTATTCAatggagaaaaaaaagtgtCAGAGTTCAATATAAATTCATCAGTTATTATGTTTGGTCCCTTAAACTTGCAAGACGAGGGAAATATTATATGTGAAGTAACTTtgaacaatacttttttttatagtaatgcAACAAACTTGATTATATtagtgGAACCAAGATTTATTAATGTCAACAACATAACTGCTATTGTAAATGAAGTAGCTTATATTTCTTGTACTATAACAAGTAAACCACAAGCAAGTGTTACATGGTTTGTGAACGACACACTGATAAATTCTAATAACCGTTATTCAAtggaaaaaacacaaaaaaatagtttaaatacaGAGTATAGGCTtgtcataaaaaatgtttcagtttttGATGCAGGTTTATATACGTGTTCTGCTTCAATAAAATATGCAAAGAGTAATCAGTCACTTGAGCTTATCAttaattatcCTGCATATATAACTTATTTACCTCAACAATTTCAAGCTGCAACTGATGAAACTGTTGAGCTTGTATGCGTGGCTGGTGGATTTCCTCGCCCAATCGTGAgttggtataaaaataattcactCCTGATTAGTGATGATTTGTACAAAACCTCACAAAATTTTCTGCACTATAAATATGACATTGTTACTGTAGCCACTCTTCATATTAATCGcgttaaaatttcaaactttgatACATACATATGCCAAGTTCAAAATTATCTTTCTGGTTTTGTTAATGGATCCACTCAACTAGTGGCTAGACGGAATTTATCTTTTTTGACTCAACCTTCAGAAGTAAATGTTTATCTTGGTGACTCAATTACTTTAAATTGTACTGCACAAGCTTATCCAAAGCCCTCAGTGAACTGGGTAACTTTAAATAACAATCGTACAACAATCTCTTCTCCAAAAGTCTTAGTTGAAACACAGGATAATACTATTGTAGAAATATTGTTGACAATTAATAACAGTAGGCTTGATGACTATGGTAATTACACCTGTGTTGCTAATAACAGTGATGGAAATATAACAACAGATACAACTCTAAATGTTATCTggagtttatcttttttaactcAGCCTTCTTCAGAAGAAAATGTTTATCTTGGTAGTTCGATAACTTTAAATTGCACTGTGCAAGGTTATCCAAAGCCCTCAGTGAACTGGCTAACTTATAATAACAATCGTACAACAATCTCTTCTCCAAAAGTCTTAGTTGAAACACAggataatattattttagaaatattgttgACAATTAATAGCATTACATTTGATGACAATGGTACTTACACCTGTGTCACTAGTAGCAGTGATgtcattaaaacaacaaatacaaCTCTAAATGTTAAATcaattaaaccTTCTATACCTTCTCCAGCAAGTTTTCAAGCACCAGCTTCTTGGCATAAAGAATGGTATATTGTCATCTGGGTTTTTATTCCCATTGTTTGTGTTCTCTTTTTTATTCTTGCTGTGTTGTTGGCAAGAAGGCGAAGGAATAATAAAGCAGTGGTAGTCGTACCAGTAAACCGCAGTGTTCCAGATCCTCCTGTTCGCAGTATGGCTACCCAGCGTGATATATATTTACCAGAAGCCAATCAGCTACCAGCAGTTAATTTTGGTTATACACCAGATGTTGATGTTCAAGAGatTGAAGTTGAGTTTAATGAAGATTCCAGTGTTTATCTTGAAAGTGTAGAATACAATCCTGATGCTGGAAACGCTTTTTATAATCATTATGATCAAGCCGGTCCTCcgcctaaaaataaaaacgaagtACAAGGTGATCAACTGAATGCAGGATATGCTGTAATAGACGATAAAGTGAAATTGTTTGATCACAagagtaaatttaatttaatttaaagtccttttttttaatctcgCTTTCAATCttgtatttaattttgcattttatctTGCATTTAATTTTGCATTCAATCTTGCATTCAATTTTGCTATGAAGTCTTATTTAACTattaagttaaagttaaatttcaatagatttttatagttatttttttaattttaatagaagaaaaaaaaccacaaacttttttaattttaatagaaggatgattatttaaaaaaccacaaa

Protein

Uniprot

Uniprot term	Description
A4IGL7	Peroxidasin OS=Xenopus tropicalis OX=8364 GN=pxdn PE=2 SV=1
Q7Z5N4	Protein sidekick-1 OS=Homo sapiens OX=9606 GN=SDK1 PE=1 SV=3
Q3UH53	Protein sidekick-1 OS=Mus musculus OX=10090 GN=Sdk1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR050958	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080	CONTACTIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0008046	Molecular Function	axon guidance receptor activity	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0043025	Cellular Component	neuronal cell body	Interproscan
GO:0050808	Biological Process	synapse organization	Interproscan