Gene detail

Detailed information of XP_065644177.1 in Hydra vulgaris

Genomic Location: NC_088920.1:38297078...38330879
NR annotation: XP_047130641.1, RCC1 and BTB domain-containing protein 1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065788105.1

ataacacacacacatatagtaattaaaaataaattatgtctTGTTTAAACTCATGGCCAATCCTTAGTTTTATTCCTTCAAGTCTTGCAACTAAGGTAAAGAAAGCTTTTGTATTTGGAGGTGCAGGAAATGAAGCATTGCTATCATTAACCAATGGTGATGTTTATGCACTAGGGTTCAATGGAAATGGCTGCTTAGGGGTTGGAGATGGTTCAAGTACATTAGAACCTAAAATAATTGAACAATTGTGTCAAAAAGATATTGTTCAACTTGCTTATGGAATGGGTCCCCATGTTTTAGCAGTTACAGATTCTGGTGAACTGTATAGTTGGGGTCATGGTGGATATGGTCAACTTGGTCATACATCTGAGGAAAAATCTAAACCAGTTTTGGTTTATATGcagaaaaaagttattcaagttGCTTGTGGTTCATATCACTCAATTGCTTTAACTGAAGATGGAGAGGTTTATGCTTGGGGCTCAAATAACTGTGGTCAGCTTGGTTTGGGTATATCAAACAACCAAGCTACACCAAAGCGTGTTTCTTTAATTCCTtcaaaGAAAATAGTTTCAGTTTCATGTGGACAGTCTTTTACTGTTATGTTAACTACTGACGGAGAAttgtaCTCTTGGGGTTACAATGGCAATGGTCAACTTGGAATAGAAAATAATACAAACCAATTGCAACCTGTTAGAGTTACAGGATCTCTTATTggaaaatttatagaaaaaatagttTGTGGAATGGCACATGTACTTGTACTCACTGATATTGGTGAGTTATACAGTTGGGGTGCAAACTCATATGGCCAACTTGGGCTAGGTACTACTCATAATACATCTGTACCAACACTCATTAACACAACCACTGATGATAGGTGGTCAGATATTGCAGCTCATCACTATAATCATATATCTGCTGGTGTAACTATATCTGGAAAGATCTATATGTGGGGACATTGTCATGGATTAACAATATTATCACCAAGAGAAGTTGCTGTAAATAATCTTGATGGAGTATTTTCTTGTTTTGGAATGCCACAGATAATGTACAAGTTTATTGATATTGatcATGAAGAGAACCAAACTATTAAAGAAGCTATTGCAAAGTCATTTAATGAGTCTgAAACAAGTGACATAACATTTCTTGTTGATGGAAAAGAAATTCATGCACATAAGTCAATACTCAAAATCAGATGCCACTATTTTCGTAATATGCTTCATTCTAACTGGAAGGAATCAGATAAAAGGGAAATTGAAGTGGCACAGTTTAGTTATAATGTGTACGAGGCATTTATTCGATACTTGTATACTGATTTTGTAGATTTACCTCCCCATGACGCCATTGcATTGCTCGATTTAGCTGATGCTTATTGTGAAATACGCTTAAAGAAACAATGtgaaaatatgattaaaaaaggTATATCCATTGAAAATGCTGCCATGCTTCTCGAGACATCGATAAAATATAGTGCAAAGAGTTTAGAGGATTATTGCTTCCGATTTGCATTGAACCACCTAACTGCTGTTACTCAAACGGAAGCTTTCAGAAATCTCGACGGTGAGACAGTAAAGGCGTTCATAATAAAAGCTGGTTTAAGTGGAGCATTCAAAAGGTAAAAAAGGGCAATAAACTTAGTAATATAGAGATATAGTTACATATTTCTGGCCGAAGTAAAGTGTTTAGTCAACTGACAAGCGTGTGGTTTGGCACCAAAAAACCTAAGCAGCTGGGCTTTCTCTATcgtaaataatgttaataatgtaaataatttattcccatatatttatattttgtttataagtttaatcaaaaaaatttcatattttttttgatatttttattataaaaatgttctaatagtaaattaaataattttatgtttatttatcttacatttttgtaaatatgaatattgttatattgaagaaaaattatattacgaGAATTTTTGAACTAAacgaaattatttttattattttaactttttttttaagaatacatGAATAAaatagtgtaa

Protein

Uniprot

Gene family

Uniprot term	Description
Q6NXM2	RCC1 and BTB domain-containing protein 1 OS=Mus musculus OX=10090 GN=Rcbtb1 PE=1 SV=1
Q8NDN9	RCC1 and BTB domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RCBTB1 PE=1 SV=1
Q6P798	RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Rcbtb2 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	ZBTB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00415	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan
PF00651	BTB	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR000408	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR051625	Family	Diverse Signaling and Regulatory Domain-Containing Protein	Interproscan
IPR009091	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22872	BTK-BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11494	RCBTB; RCC1 and BTB domain-containing protein	-	Chromosome and associated proteins	ko03036	deepkoala