Gene detail

Detailed information of XP_065646504.1 in Hydra vulgaris

Genomic Location: NC_088921.1:26310455...26346229
NR annotation: XP_047134241.1, far upstream element-binding protein 3 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065790432.1

aaagtataatttaatgaaatagAGGCAATTGCGCCTTCCCACAATTCACTTACCATACATTCGAACTAAAAGTACATCAAGGTCGCATTTGCAACAATGGCTGCTCAAACTACTGATCAGCAGAATGCCCTTAAAGACGCTATGGCTCGTGCCAAACAGattgccGCTAAGTTGCAACAACAACAATCATCTGGAACTCCTCTTGATAACTATTTGGAGTATGatGACTCTCGAAAAAGAAGCTATCAAGATTTTGCACCATCTGAGCCTTTTCCAAAGCGAATGACAATAGAAGGagCTGTAGACCACTCTGACCCTAAAATTATAGCACAGCAAGTTGCGAACAGTCTTGTACAAAGagCTGGTATAGGCTCCATGTTAGTTGAAGATGTTTCTATTCCAAATAAACTCGTTGGTTTAGtCATCGGTCGTGGAGGGGAAATGATAAATAGACTACAATCTGATTCTGGTGCTAAAATACAAGTTGCTCCAGatCCACCACCAAACATGATGGATATTGATCGCCAAATTACTATAACTGGCTCCAGCGAAGCTGTGagTAAAGCTAAACAGCTAATCGAACAAATAAGAAATGAGGGAAAAGTACCAGAAAGATTGaTGCTTGCTGCAAATTTACCAGGAGAGTTTTCAATTGAAATGAAAATTGCTGCTGGTAAAGTTGGACTTGTAATTGgGAAAGGTGGTGAAACAATAAAGTCTCTTCAGGAAAGAGCAGGCTGTAAAATGATTCTCTTTCAAGATGGTGAATATGCGCAGGCTGCAGAAAAACCTCTTAAGATAAGCGGAGAACAATCTAAAGTTTTAtatGGCAAACAGTTGGTTCAAGATTTAATTGTATCAAAAGAAATTgagGCTGACAAAACTTCGTGCTACATATTTAATCAATCACCTTATACATCAGACATTACgtcaATGGTGCCCAATCCAGGAGATCCTGATCAAGTTGGCTATGAGGAGATACAAGTACCTCGTGAAGCTGTTGGATTTATAATTGGATCAAAAGGagctaatattaataatattcaacaaATGACTGGTTgtagaattcaatttaaaaATGAAATGGAAGGTGAATTCAAAACAGCTACACTACAAGGCAATCCTCAAGCTATAGTTATGGGTAGAGAAAAGCTACTTGAAATACTGCAAGCTTATCAAGATAGAGTCAATGGTACCGGAGGAACGTTTCAGTGGCGCAGCCCAAGACCAATAGGAATGACCACTGCAAGACCTGGTTGGGTTACACCCGGTGTACCCGGACATTTTGCTACTGCTAGACCAGGTTGGCCTGGCCATCAAGTTGGGCCAAGAGCTTGGGTTCCAAGAGTTCCTGGACAATATATACCAAGAGCAGCTGGAGGTTTAGGAGGTAGCAGTATTCTGCAACCTGGTCATAAACATATGGAAATTGATGTTCCGGCAAATAAATGTGGTTTAATTATTGGAAAAGGTGGAGAAACACTGAAATATATGCACACAGAAACTGGAATAAacatagaaataaaaagaaatgttcCGGATTCATCCCCTTTTCGTACATTTAATTTAAGAGGTACTGATGAACAAATCTCTAAAGCTGAAACGTTTATTAGAGAAAAAGTTGGAGATCAGtcTCTTACAGCTAAACCTGCTTCTGAAACTGATGATCAAAAtGCCAATCAAGGAAGCAGATGGGGTCCTCCACAACACAATAGCCAATGGGCAACACAAGCCACTCAGCAATGGGACGGTCAAGCTGTTTGGACTCAACCTCAGCAAGACCAATGGGGCCAGCAAGGGGCATGGAATCAACAACAACCTGTAACTTGGAACCAACCAACAGCTAATGGTGTGTGGGCTCCACAGCAACAATGGCAACAACCTAATGCCCAGTGGCCAGCTCAACAACAACCATGGGGACAACAACAAACACCTGGTACTCCTGCTAATACAAACCCAACCGGAACAGCTAATCCAGctggAAATCAAGCTGCTGCTATGGCAGATTACCAAGCTAAGATGGCAGAATATTATAAATCCTTTGGTCAACAACCGCCCACTCAATAACGCTTACATAgagATAACAACATATTGATGTCGTTACATTGCAATTATTATACTGTTCTATTCTATGCTTGTCGCTTATGTTAATATGCATGTCATCAAATACGCTTGCATTTAAACTGATTTGATTGCTGTGAACATTTTCCTACATAAAACTattattgaattaaaagaagatattaATGGAAATATATAACTCTACTACAAAGATTAAATGACTGTAGCCCAATTTTGTATAGTCTTtgttattcttagttttttaagGTGTCATTAACAAGAAAGATAAAACTAGTTTTGGC

Protein

Uniprot

Uniprot term	Description
Q96I24	Far upstream element-binding protein 3 OS=Homo sapiens OX=9606 GN=FUBP3 PE=1 SV=2
Q96AE4	Far upstream element-binding protein 1 OS=Homo sapiens OX=9606 GN=FUBP1 PE=1 SV=3
Q32PX7	Far upstream element-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Fubp1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013	KH_1	KH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR004088	Domain	K Homology domain, type 1	Interproscan
IPR004087	Domain	K Homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13210	FUBP; far upstream element-binding protein	-	Spliceosome	ko03041	deepkoala