Gene detail

Detailed information of XP_065646680.1 in Hydra vulgaris

Genomic Location: NC_088921.1:31540562...31583824
NR annotation: XP_047134373.1, mutS protein homolog 4 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC100208154

ATGTCATCAATCTTTACAAATAGTAATTTTTCAGTTGCTAACTCAACATCAAAACGCCAGAAGATAAGTTCTGATTTCTATACTACATCATCAAATAGTACCAGTCTAGATAGAAGTGCAAAATATTCATTTAATTTAGAAACACCTCATTTGAGTTGGGATCATGACGGTAAAAAAATTACCAAGAAATCTTCAGGAATATGCTCTCTACAAACTCCTTTTCAAGAGAGCAGCTCAAATGGTTCAAAGCACACTCCAAAAACACCTGCTTCTAGAACACCATTAGGAAATAATGCTCAAACCAGCAATGTTGTAGCCATTGTTGAAGGTCGTGGTATGGCAAAGGGAGAGATAGGCATGGCTTGCATTGATCTTAAGGGGGCAGAACTGATTATTTCACAGTTTTCAGACGGTCCTACATATGTTAAAATATTGTGTAAACTACAAATAATTCAACCAGTTGAGATTATAATGCCAAACACTTCCTATGAAAATGGCAAAATGACACAGCTTTTTCAAGTAATAAGTGAACAATTCCCATATGTTACACTGACTACTGTTCAAAGAAAATATTTTAACGAAAGCAAAGGTCTCCAGTACATTAGGCAGCTTTGTGTACCAGAATTTAATACTGTTGAAATGGATGTTCAGTCAAAGTATTATTGTTTAGCAACAGCAGCAGCACTCTTAAAATATGTTGAGTTCATTCAAAATGTGGTTTTTGCTCCTGCTTCCTTAAAAATTACTTACAAAGGAGGTGAAAAAACAGCACTTATAGACATGACTGCTGCACGTCATCTGGAACTAGTTCACAACTTAAGAAATCCAAAAAGCAAGCAATCTTTGTATGGAGTACTGAATTATACAAAAACAGCTGGGGGAGCTCGCTTGTTGAGGTCAAACATTTTGCAACCTCCTTGTGATCTTCAAACGATACAAACAAGATTCGATTGTATTGAGGAACTTGTAGAGAAAGAAGAACTTTTTCTTAATTTACAAGCTATAATTGGCAAGTTTCTTGATGTTGATCATTTGATATCATCTACTGTTCAAATTCCAAAGAAAGAAGGCATAAAAGTATTTGAAAGAAAAATAGCAGAAATAATTTTTTTAAAACACACTATAGAACTTGTTCAAATACTACAAAATGCATTAGCTGATGGCCAAAATAGTTTATTTAAAGCATATTATCAGTCATTAGATGATTCTCGATTTGTAAATCTTTTGGAGCAAATCAAAACTGTCATTCATGATGAAAGTCGTTACCAAAAAGGTGCTCTTAACATGCGCACACAAAAACTGTTTGCTGTTAAGCCAAACGTCAATGGTTTGTTAGATGTTGCACGTCGCACTCACTGTGAGGTAGTTGATGATATAACAGAAATGATTCACCAAGAAGCTACATCAACAGGTCTTATGCTAACACCAAGTTATAACAATACCAGAGGTTTTCACATCACTCTCAACACTAATGGTAACAACAATTTAGTTGATGCTCTTCCTTCACATTTTATAAAAATTGTTCGAGCGAAATCTGTGATCAGTTGCACTACTGAAGATTTGATCAAGTTAAACACAAGATTGGACGAGTCATTAGAAGAAATATACTTTTTGTCAAACATGGTTGTTGGAGAACTAATGAAAAATATCAGAGATCAAATTGGTTGTTTATATAAGCTGGCTGAATGTATATCAACTTTGGATCTGCTTGTTTCTTTAGCTCACGCTTGCACTCTCTCTAATTACATACGGCCAGAGTTTACAGATACTCTTGCCCTAAAACAATCTCGCCATCCAGTTCTTGATCGCATGTCATCCTTGCCTATTATTCCAAATGATGTGTATGCATCTGATGTTTCCAACTTTATATTAATAACAGGACCAAATATGAGTGGTAAATCTACATACCTGCGTCAAATAGCTTTGTTACAAATTATGGCTCAATGCGGTTCTTTTGTCCCAGCTGAGTATGCATCTTTTCGTTTAACAAATCAAATATTTGTTCGCATTGGAAGTGATGATGACATTGAAACAAACTGTTCTACTTTTAAGTTAGAGATGAAGGAGATGAATTATATTCTTCAGAATATCAGGGATGACTCTTTGCTTATTGTTGATGAACTTGGTCGAGGCACCAGTGTTGAAGAAGGCATTGGAATTACTTTTAGTATATGTGAATATTTGCTCTCTAAAAAAGCATTCACATATTTTGCTACTCACTTTCATTCTCTTTGCGATTTGGAAAATCTCTATCCCAATGTGGAAAATTATAACTTTGAAGTTCAGCAAGTTGTTGACCAAACTCAAAGCACTGAAAACATGCAATTTACCCATGTATTAGTGAAGGGAAGAACTACTGTCGAAAACTATGGGCTCAAATTGGCTGAAATGTCAACTTTACCAGTAGAATTAGTTGAAAAAGCAAAAGAAATAGCATTGCAACTTCAGCAGAGAAAAAATGAAAACCAAAAATCTTTGGAATCCTCCAAAAGAGAGAAAGCTGTATTCAGGCTCGTTACTCGACTATTGCAAGCAGCGAAAAATTCTCGCTTAGATGAAGAAACTCTTCGTTTATATTTAGCAGGTTTAAAAAGGCAATTCATTGCAGATATTTCCGAAGAATAA

Transcript

rna-XM_065790608.1

acttttcttttcagagaaaattttataataatgtcatcaatctttacaaatagtaatttttcAGTTGCTAACTCAACATCAAAACGCCAGAAGATAAGTTCTGATTTCTATACTACATCATCAAATAGTACCAGTCTAGATAGAAGTGCAAAATATTcatttaattTAGAAACACCTCATTTGAGTTGGGATCATGACGGTAAAAAAATTACCAAGAAATCTTCAGGAATATGctctCTACAAACTCCTTTTCAAGAGAGCAGCTCAAATGGTTCAAAGCACACTCCAAAAACACCTGCTTCTAGAACACCATTAGGAAATAATGCTCAAACCAGCAATGTTGTAGccatTGTTGAAGGTCGTGGTATGGCAAAGGGAGAGATAGGCATGGCTTGCATTGATCTTAAGGGGGCAGAACTGATTATTTCACAGTTTTCAGACGGTCCTAcatatgttaaaatattgtgTAAACTACAAATAATTCAACCAGTTGAGattataaTGCCAAACACTTCCTATGAAAATGGCAAAATGACACAGCTTTTTCAAGTAATAAGTGAACAATTCCCATATGTTACACTGACTACTgttcaaagaaaatattttaacgaAAGCAAAgGTCTCCAGTACATTAGGCAGCTTTGTGTACCAGAATTTAATACTGTTGAAATGGATGTTCAGTCAAAgtattattgtttagcaacaGCAGCAgCACTCTTAAAATATGTTGAGTTCATTCAAAATGTGGTTTTTGCTCCTGCTTCCTTAAAAATTACTTACAAAGGAGGTGAAAAAACAGCACTTATAGACATGACTGCTGCACGTCATCTGGAACTAGTTCACAACTTAAGAAATCCAAAAAGCAAGCAATCTTTGTATGGAGTACTGAATTATACAAAAACAGCTGGGGGAGCTCGCTTGTTGAGGTCAAACATTTTGCAACCTCCTTGTGATCTTCAAACGATACAAACAAGATTCGATTGTATTGAGGAACTTGTAGAGAAAGAAgaactttttcttaatttacaAGCTAtaattggCAAGTTTCTTGATGTTGATCATTTGATATCATCTACTGTTCAAATTCCAAAGAAAGAAGGCATAAAagtatttgaaagaaaaatagcagaaataatttttttaaaacacactATAGAACTTGTTCAAATACTACAAAATGCATTAGCTGATGgccaaaatagtttatttaaagcatATTATCAGTCATTAGATGATTCTCGATTTGTAAATCTTTTGGAGCAAATCAAAACTGTCATTCATGATGAAAGTCGTTACCAAAAAGGTGCTCTTAACATGCGCACACAAAAACTGTTTGCTGTTAAGCCAAACGTCAATGGTTTGTTAGATGTTGCACGTCGCACTCACTGTGAGGTAGTTGATGATATAAcagaaaTGATTCACCAAGAAGCTACATCAACAGGTCTTATGCTAACACCAAGTTATAACAATACCAGAGGTTTTCACATCACTCTCAACACTAATGGTAACAACAATTTAGTTGATGCTCTTCCttcacattttataaaaattgttcgAGCGAAATCTGTGATCAGTTGCACTACTGAAGATTTgATCAAGTTAAACAcaaGATTGGACGAGTCATTAGaagaaatatactttttgtcAAACAtGGTTGTTGGAGAACtaatgaaaaatatcagagaTCAAATTGGTTGTTTATATAAGCTGGCTGAATGTATATCAACTTTGGATCTGCTTGTTTCTTTAGCTCACGCTTGCACTCTCTCTAATTACATACGGCCAGAGTTTACAGATACTCTTGCCCTAAAACAATCTCGCCATCCAGTTCTTGATCGCATGTCATCCTTGCCTATTATTCCAAATGATGTGtatgcATCTGATGTTTCCAACTTTATATTAATAACAGGACCAAATATGagtgGTAAATCTACATACCTGCGTCAAATAGCTTTGTTACAAATTATGGCTCAATGCGGTTCTTTTGTCCCAGCTGAGTATGCATCTTTTCGTTtaacaaatcaaatatttgttcgCATTGGAAGTGATGATGACATTGAAACAAACTGTTCTACTTTTAAGTTAGAGATGAAGGAGATGAATTATATTCTTCAGAATATCAGGGATGACTCTTTGCTTATTGTTGATGAACTTGGTCgagGCACCAGTGTTGAAGAAGGCATTGGAATTACTTTTAGTATATGTGAATATTTGCTctctaaaaaaGCATTCACATATTTTGCTACTCACTTTCATTCTCTTTGCGATTTGGAAAATCTCTATCCCAATGTGGAAAattataacTTTGAAGTTCAGCAAGTTGTTGACCAAACTCAAAGCACTGAAAACATGCAATTTACCCATGTATTAGTGAAGGGAAGAACTACTGTCGAAAACTATgggCTCAAATTGGCTGAAATGTCAACTTTACCAGTAGAATTAGttgaaaaagcaaaagaaataGCATTGCAACTTCAGCAgagaaaaaatgaaaaccAAAAATCTTTGGAATCCTCCAAAAGAGAGAAAGCTGTATTCAGGCTCGTTACTCGACTATTGCAAGCAGCGAAAAATTCTCGCTTAGATGAAGAAACTCTTCGTTTATATTTAGCAGGTTTAAAAAGGCAATTCATTGCAGATATTTCCGAAGAATAAGCTTCATGTAAGGTGTAATACACTCACAATTATGACGTAATACTCACAGTTACAACTTTTACAACATTTATAGTTACGTCAGCATTTTTTGACTCTTTTTCATACGTGATTCCGCTcactaatatttaaagtttaaatgtcgaataaattattataattattgcttttatatcttataaatCTTCCTTTTAAACTCCGTAaaactgaaattattttatttaaaattaccttaaattca

Protein

Uniprot

Uniprot term	Description
O15457	MutS protein homolog 4 OS=Homo sapiens OX=9606 GN=MSH4 PE=1 SV=2
Q99MT2	MutS protein homolog 4 OS=Mus musculus OX=10090 GN=Msh4 PE=2 SV=1
F4JP48	DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana OX=3702 GN=MSH4 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05188	MutS_II	MutS domain II	Domain	Interproscan
PF00488	MutS_V	MutS domain V	Domain	Interproscan
PF05192	MutS_III	MutS domain III	Domain	Interproscan
PF05190	MutS_IV	MutS family domain IV	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036187	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR011184	Family	DNA mismatch repair Msh2-type	Interproscan
IPR007860	Domain	DNA mismatch repair protein MutS, connector domain	Interproscan
IPR036678	Homologous_superfamily	MutS, connector domain superfamily	Interproscan
IPR000432	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007696	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR045076	Family	DNA mismatch repair MutS family	Interproscan
IPR007861	Domain	DNA mismatch repair protein MutS, clamp	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0007131	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08740	MSH4; DNA mismatch repair protein MSH4	-	Chromosome and associated proteins	ko03036	deepkoala