Gene detail

Detailed information of XP_065648154.1 in Hydra vulgaris

Genomic Location: NC_088922.1:3509163...3545513
NR annotation: XP_047127988.1, protein SON [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065792082.1

AGAGTTAACAACTTTATTATAACTGTGGAACTATAGTGTGGACCAGTGTAATTTGGTTTGTATACTCAAAAGTTGTTTGTGAGAATGAAAATCCATCAAGTTGGATAAAGAATGGTTTTGTCTTTTGAGTGAATCAAAATATGGgatttgcaattaaaaaatagtataaaacgACAGATTAGTATGGAAAAAAACTCTGATGATTGGACAGAGTCTTCAGATTCCAACTGTTCAATAACTGATAAAGTGTTAGAGATTTTAGATGAAGAAGAAAAacgaattaaaataaagaaaagaagATCTGAATCCAGTGAAATTGAATCTAATGAAAGATCTGAGCAGAGAAAAAAATCATCTCCTGTTGGTAAAAGTCGATCAAATAGTAGATCCAGAAAAAATGAGCAAAActctaaaaatttagaaagaatCAGATCCAGGTCTAGATCAAGGTATAATAGAAGTCGTTCAAGTTCTAAAAGTCGTTCACGTAGTTATTCAAATGAAAGATATCAAGTCTCAAGATCTAGAAACTATTCTAGAGGTAGAAAAAGAAGTAGAAGTCGATCTAGACGTCGCAGAAAGTCAAGAAGTTATTCCAGACATCGCAAGCGATCTCGATCTTACTCTActgatagaaaatataaaaataaacgtAATAAAAGTCGTTCTCGTAGCCGTAGTCACTCCAgaaattattatagaaaaagaagCCGATCTCGTAGCAGATCTCGTACCAGTTCTAAAAGTAGATCATATGaaagattaaaagaaaagtCAAGTTTCGATAAATGTTCTGGAGTTGCCTTAGttgatagtaataaaaataaatctatagAAACAGGTAGtccttcaaaaatattagaaaaaacaacagAATCAACACTAATAAATGACAATGAATTATTAAGCAGATCAGAAGGTTCTGTAGCTAAGaaaagtattgaaataaaacttcaaaGTCGTGTTCTCGGTGAGAAAAGTGTTAAATCAGCTGATCCTAAATCTTCTTTGTATGGTAAATGGGAAAAGTATGAACAACCTGTTAAAAATCcagaaattaataaacttacTAATCTTTGTCGTGAAATATCTGCAAAAGAAGGCTACGAAGATTCTGaagataaaatagaaaataatagtgTTAGTCATCCTTTTCAAGTTGCACCACCATCAGTTTATCCAATGTTTTATAAAGGGAAACCTACGAATCCTGCTCAAGCTATTATGGCTGGATCATTATATTCAATAGCCGGTCCTGTAGATCCACCCAAAACTGGCCCACTTGAAAACTATTTTCCAGTTTCCTCTGGTAGCGAACATCATAAGTTAGAAGGTCATGGACAGGAAAAATTACTTGTATATGAACCAGTTGAACCTGAAGagcatataaATGTTAGTGCTGTTATTGCACGTCGACTCGGTGCACAGCAAATATTAAATTCTAACCCAGATGATTTTTCAGCAAAAGCAGTTCTTGCTGAATGTGACTTGAAGCTTAAAAAATGGAGTGATCAGAATAAAAAGCCTGGCAAATTTACTGGAACTCAACTGGGAACACGGATGAATAAACATGAAATTGTTGGAGCTGTTGAAACCTGGGTCAGAAaggATTTTTTCCATAACCTTCAACCAGTTACTGGGGGTGTTGGAATGCGCATGATGCAAAAAATGGGATGGCAGCAAGGGCGTCCTCTTGGTAAGAAGCAGGAAGGATTCCTGGCACCAAttgcagttgatataaaagttggAAGAGGAGGTTTGTATAGTGCGGATGAGCAACCTCAGTTCAATGTTTGGAATGGAAAATTGGTACCAAAAAGGCGTCCTCCAGCTCCTGTTGCAAATATAAATGGGAAGCATCCTGTATCTGCACTTGCCGAACTTTGTGTGAAAAGGAAATTAGGTATTCCTGATTATACTTGCGTTTTTGAACATGGCCTTgcacaaaacaaaaattttttgatgaaagtAACTGTTGCAAACGTTGATTACCAAGCTTCCGTGGCTTCACCTAATAAAAAGCACGCCAAGGCAAATGCTGCAATCGTTGCTTTAAGAGCGATGGGTGAAACTGTtgagtagatttttttttgcatgtgtatatatttgtaaataatttatattattgattctaaagatttttataagttatttatattccgctattaagtttttttaaa

Protein

Uniprot

Uniprot term	Description
Q9QX47	Protein SON OS=Mus musculus OX=10090 GN=Son PE=1 SV=2
P18583	Protein SON OS=Homo sapiens OX=9606 GN=SON PE=1 SV=4
Q9VHB0	Protein Son OS=Drosophila melanogaster OX=7227 GN=Son PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01585	G-patch	G-patch domain	Family	Interproscan
PF00035	dsrm	Double-stranded RNA binding motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000467	Domain	G-patch domain	Interproscan
IPR014720	Domain	Double-stranded RNA-binding domain	Interproscan
IPR032922	Family	Protein SON	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46528	PROTEIN SON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0043484	Biological Process	regulation of RNA splicing	Interproscan
GO:0048024	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan
GO:0051726	Biological Process	regulation of cell cycle	Interproscan