Gene detail

Detailed information of XP_065648414.1 in Hydra vulgaris

Genomic Location: NC_088922.1:11668395...11678288
NR annotation: XP_002166224.1, ELAV-like protein 3 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065792342.1

tttatatacttGGCCACTTCTTTTTGAGCTGAACCATTATCTTTTCCATTACATTCTATAtccatttataattaaaattgctACTTAAATATCgaattattagtattaataatgTAGTTAtcgatttttagttttttaaaaatattatgcttaattcatttttaaaatccattttttttctaacactACCATCTTTGTTGATATATCCCAGACTTCTTATTAAATTAACTCTCACTCGctgatgttactttttttaaattagcgtAGCGTGTCACATTTTCATTTCGTTTCAGATAACTTCTCTTTAAGTTACATGAACCATATCTGTTTAGGCAGTTTTTCATTTTCAGTGTTTCACTAGATATTCATAATGGACAACAGAGATGGTATTGGAGCAACTGGATTGAAAACTAAGATTATAGTGAATTACATACCGCAAAGTATGAATGATGATGAATTTAGACAGTTATTTGGTCAATGTGGAGCTCTACAAGAATGTAAAATAATTCGAGATAAACAAACGAACTATAGTTTTGGATACGGTtttgttgattatttaaaaCCAGAGTATGCAAGTTTAGCTATTTCAAAGTTGAATGgatttcaaatacaaaataaaagtattaaagttgcATATTCAAAACCGCCAGGGTGTAGTAAAAATGCCAATCTCTATGTTACTGGATTAGGAAAACATacaaatgaaaaatctttagaagAGTTATTTGGAGTTTATGGTGaaattattcaaacaaaattactAAGAGGAGCTGACGGTACTTCTAAAGAAATtggatttgttttatttaaagaaaagccACATGCTGataatgctataaaaaatttgcaaggGTATTCCGATGGTAATGGAATGAATTTACAGATAAAGTATGCTAAAGATCAAAATGAAAATCAGAAGCAATTGCCAAAGTTCAATGGCTTTTATCAGACCAATATGCAAAGGATGTCTCAAAGTTCATTAATGGCAGAAAGTTACCCATATAATGTTGCTCCATACAGTGCTGGTGTTATGGGACGTGGAATGGATTATGGAGGAGGCTATGATAGTGCCATGGGTATCGGAAAAGCTATTCGTGGTCGAGGTGTTGGTACACGATTTAATCCACTTGCAAGACCTTTAAATAGTGACATTGGTTTAGAGCAATATGACCCTTTTACAGAGTCGATAgtattgtttgtttataatattgGTCCTAATGCACAGGACAGTGACTTGTATGGTTTATTTTGTAGGTTTGGTAGGATTAACAAAGTAAATGTTATAGCAGGTAAAGGATACGGTTTTGTACATATGCCTGTACTCAATGAGGCACAAGCAGCAGTTAATGCTTTGAACGGAATGTTTTATAATGGTAAAAATCTTCAAGTTTCTGTTAAGGCCAGCAAGTAATAATTCATCTTAAGGTAATCATTAAATTTCATTTCTGAAACatcaaaagttttaatgatatccttaaaaaaattttattttaatgaaaagctTCTGGATGGttgttaactattttttgtCGAGTCTGTTGCAATCATGTGTTTCAGTTAAATGACGAAGTGAAAAACCTCTGGCACTAGTTTTAGTCGTACCATTTTCAGATAAATGCCAATgcatttgaaaatgtttttcatttgcATTTGTGGTACCGTTAACAATTTGAGTGCTTTTCTGGTAATTTCGGtccagttttttttgttttgttttgtttttttttttaattttcaacgAATGGTTTTATTTACTGagcaaatttcttttttttttcctttaggttttttgaattaacttagttttttttttgttttgttttttgtttttatttaatttttattttgcatttattgatcaatcaatattaacaaataatcacttttttttttgtttttgttttttcttttctttttttttttggttttgttaaattaatttctctcaattttagtttaagttaatttttttttgatatatttttttttttgttgtttttgtttgttatttattttttgctttgtttttttttttgttttttttttgtttttgttatggttacttgattttgtttttattgatatggtaagttttgttt

Protein

Uniprot

Uniprot term	Description
A0A0R4IEW8	ELAV-like protein 4 OS=Danio rerio OX=7955 GN=elavl4 PE=1 SV=2
Q61701	ELAV-like protein 4 OS=Mus musculus OX=10090 GN=Elavl4 PE=1 SV=1
O09032	ELAV-like protein 4 OS=Rattus norvegicus OX=10116 GN=Elavl4 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002343	Family	Paraneoplastic encephalomyelitis antigen	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan