Gene detail

Detailed information of XP_065648427.1 in Hydra vulgaris

Genomic Location: NC_088922.1:12070811...12096612
NR annotation: XP_047128179.1, WD repeat-containing protein 1-A isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065792355.1

GGAAGTAGTaatgaattaacttttttttttaaagttcggcggattttaaattacttttcacGGTCGACTGATATAGTgggagttattttttttttatgtttacagcTACTTGCTCATAAAAACTTGGGTCAATAAGAAAGCTCTTCTGAAGATTAGCTATAATGTCTGAAGATGGTTCATATACCCTACtaaatatttttgctgGTACGCCAAGAACTACACGTGGTCGACCTATCCACCTTTCTGCTGATCctaaaggaaaaaattttttgtattgtcaAGGGAATAGTATTATAATTCGTGATGTAGAAAATCCTAGTAATTCAGATGTGTACACCCAGCATGCTAAAGACACTACAAGTGCTGCTTATTCTCCAAGTGGATTTTATATATGCTCTGCAgatgTTACTGGCAAAGTGAGAATTTGGGACACAGTAAACAAAGACCATATTCTTAAGTATGAATACCCTGCTCTTGGTGGTCCAATTAAAGATATTGCTTGGACTGAAGACAGCAAAAGAATTGGTGTTTGTGGTGAAGGAAGGGAAAAAGCGGCCCATGTTTTTATGTGGGATACTGGTACATCAGTTGGTGAATTAACAGGGCCCTTGAAAGCTTGCAATAATATAAGCATTAAACAAACACGACCATACAGACTTGTTGTATCGTCTGAAGATTATTCTACATGCTTTTATGAAGGGCCCCCTTTTAAATTGAAGTCACAATTTCGAGAGCACACTAGTTTCGCAAATTGCGTTCGTTTTTCACCAGATGGTAATATGTTTGTTAGCGCTGGTTCAGATGGAAggtgctTTGTGCATGATGGGAAAACAGGTGATCTCATAGGAGAAATGTGTAGTGCTCAGCAAAAAGTACACAATGGAGGAATTTATGGGaTTTCTTGGAGCCCTGATAGTAAAATGTTGATGACGTGTTCAGCTGATAAAACTGTGAAAATATGGAACATGGACGATCTTTCAAGTAAAGAAGTTGTctCATTTGAAATGGGAAAAACCATTGATGACATGCAGGTTGGATGTTTGTGGGTTGGAGACAATATAATCAGTGTTTCACTTAGTGGAAACATTAATTATCTTGATATGAAAGACCCTTCAAAGCCTAAGAGAGTTGTAaagGGTCACAACAAAGCTATTGTGGCATCTTGTTTAAATGAAGATAGAACTTTATTGTTCACTGCAAGCTTTGAGGGACTAACCTGCTATTGGGATTTAGCTACAGGTGTTGCAGAGTATGTCCAAGGTGAGGCTCACAAAAATCAAGTGATGCACATGGAGTGTAAAAATGATACGATTGTCACATGTGGTATGGATGATACTGTTCGTTTCATAACAGTTTCTGAAAAGAAATacagcAGTAGCGTTGTTACTTTAAGTTCTCAACCACGAGGATGTGCAATTGGAAATCTTGGATTGAGTATTGTAGTTTGCGTAAACTCTatcATTGTCATTCAAGATGGAAAAGTTGCTCAAAAATATTCGTCACTTTCTTTTGATCCTACTTGTGTAGCAATAAACTGCGATCTTGCTAAAGTAGCAGTTGGTACTGAGGAGtcAAAAGTTGTTATATACGACTTAATAGGAAATGAGTTAAAACAACATTCTGATTTTCCAACTAATGGCAATGTGACTTGTATTCAATTTTCTCCTGACAATAAGTTTCTCGCGATAAGCACTGGAAAGAAACAAGTCAAAGTTGTTTTAACATCTGATTTTAAGACCGAGAAGGGTAACTGGGCTTCGCACTCTGGAAAAGTCAATTCTATTGATTGGACTCCGAACTCACATTTCTTGGCATCAGCGGGTATTGACGGAGCAGTTTATGTTTGGGATGTTGTTAAAGGTGATGTGAGTGCGTCTTTAAGaggtgcCCACTCTCAGTCTGTGGACGTCACCTCTGTTCGGTGGTCGGATAATAATACACTGTTAACATGTGGACGACAAGATTGTTGCGTTCGTAAATGGAATATAAAACATTAGTTCTGTTGCACCATCGTAAAAAAAGGAATTCTCACTAAATCTGTCATTTTTTGTTTCTGTCGGTTTTCAAAAATCTGTatcacaatttaattttatataattttgtatagtttttcgtatttctaattattaaactttttttttaatttaaa

Protein

Uniprot

Uniprot term	Description
Q6DIF4	WD repeat-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=wdr1 PE=2 SV=1
Q9VU68	Actin-interacting protein 1 OS=Drosophila melanogaster OX=7227 GN=flr PE=2 SV=1
Q9W7F2	WD repeat-containing protein 1-A OS=Xenopus laevis OX=8355 GN=wdr1-a PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19856	WD-REPEATCONTAINING PROTEIN WDR1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0030042	Biological Process	actin filament depolymerization	Interproscan
GO:0030864	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0040011	Biological Process	locomotion	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24736	WDR1, AIP1; WD repeat-containing protein 1 (actin-interacting protein 1)	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala