Gene detail

Detailed information of XP_065648539.1 in Hydra vulgaris

Genomic Location: NC_088922.1:16055875...16076845
NR annotation: XP_047128263.1, SH3 and PX domain-containing protein 2A isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065792467.1

ataaacaaaatgaaatatcaaaaatgataaaatattttattagtaaagtCAATATTACAGATGtcgcaaaaaagaaaaagccaAGCAAGCATTAtATTTATGTCATTAATTTACTTTGGTCAGATGGAACGCAGCAAGTTATTTGTAGACGTTATTGCCAGTTTTTTGACCTTCAGactaactTAATTGATGCTTTCCCAATTGAATCTGGAGAAATTAATCCAAATCAAAGAATTTTACCATTTTTGCCaggAAAGATTTTGTTTGGAAGAAGTAATGTGAAAAATGTTGCACTTAGAAGAAAAGATCTACTTACAGAATACCTTCAGcaaagacatgacaataaaaaaagaacaaacagCACACATCATATCTAATCCAAGTCCTCTAGAACAGTATATTGCtatagaaaattttgaaaaaactgaacgaaatcaggtTGCATTGGCAATTGGTGATGTTGTGGATCTAATAGAGAAGTGCGATAATGGTTGGTGGTTTGTTAGCATTGAAGATGAGCAAGGGTGGGCGCCAGGCTCGTTCTTAGAACCACTTGGTGCTACAAAAGATGTAATGGAAGAATCCATTTATGGCATGGaGGAAAAGTTTATTTGCATAAAGGCTTATAAAGCAGAACAACCTGACGAGTTGTCATTGACATTGGGAGATGTTGTTTTTGTGTTAGGAAAGTGTTCAGATGGTTGGTGGAATGTTAGGTTGAAACGTGATGCAGAAAAAGATTATGACGGTTTTGTGCCTGCTATTCACCTAAACAAGGTTCCTAAAGTAGCAGAAGCAGGAGTTGTTCGCCAATCTAGGACAGGTTTACAATCTAGAGGTATTGTTCCTCCACCAAGAAGAAACTCCTATAAgataaaAGTAAATGTATCAACTGATAAAACTCTTGTTGATGAGAAGagtaaaacaaattgtttgacAAATGTGAACCAAGTTGAAGTATCAGAGTCGCTATATGTTGCATCTACTAATATTAGAGCGTTTGGCGAAAAGAAGATAGATATATTTGAAGGTGCACCTGTTGTGGTTCAAGACAAGTTACCAAATGGATGGTGGTACATTGAAGTTGGTGGTGTAGAAGGCTGGGTGCATTCTAAAATGATTACTcgaacaagtttaaaaaagaccAAAAAAGATCAAGCAACAAAAGAGTATTATATAACATCAGCAAGTTTTAATTCAACGGATAAAGCTTGTTTATCATTCTTAGAAAATCAGGTTGTTgaagtaattgaaaaaaaggaTAGCGGTTGGTGGTTAATTAGAACTAAAACTCAAGAGGGTTGGGCACCAtctagttatttaaataaaatacattccAATTGTAATGAGATTAAAGATACATCTAAAGCAATTTCTATAAAGCCCGATTTAGAAACCGGGAAATCTTTAAAGGGAGATTTAGAGACCGGAAAACTTTTTAAGGGAGATTTAAAACCACacaaaaataatcataacaTTTTGCCACGACCTCTGCCACGACCCATACCACGACCAAAACTCAATTCTAAATCGTCTTCTAAAACATCGACTGATAACATCGACGATGCTTCTCGATGctataataaacaaactaaCAATAACCTTGTATTGGCGGGAAAACCTGCTATACCAAAAAAACCATTGACTAAGGTATCTAAAACCGGACCAATATCAAGTTCCAATACATCGATATATACTGAGCTTGAGGTTTTCACTGCTCCTACTTGCCCAAATGATCCAAATTATAAAGAATTACAATTACAGTCCATTCCAACAAAAAGTCCAATTAAAACAGCAGAAGAAGATTATATTGATATCGAAAAGTATCAATCTAAATATGAAGGAATAAGAAATCCTCCAGTTTCGAAATACACAAAACTTAATGTAGCTAGTACTTCTCCGCGTCCTACTAGTCATATATTTAAAGAACCAAAATTGAAACCAGATTTTTGCTCTCCGCTGATAAAATCAAATGAAGAAATCTACATAGCGATTGAGAATTATGAAGATACtgataaaagtataataaatttaaagatggGCCAGCGAGTgcgtgttttaaaaaaagataatggaGGTTGGTGGTATGCCGAAGTTGATAATGCTTTAGGCTGGGTACCctctaactttttaaaattgtgtaattaaagaatatttaataaattatttaagtatatgaaaactatatttttatagaatttggttttttagtaacttttttaattatttaactgtatgtttttatttttggtggCATACCGAAGTTGAAAATGTTTTAGGCTGGGTACcatctaactttttaaaattatgtaattaaaaattattttataaattattttactgcataaaaactgtatttttgtataatttagtttttagtaatttttttaatgatttaaa

Protein

Uniprot

Uniprot term	Description
O77774	Neutrophil cytosol factor 1 OS=Bos taurus OX=9913 GN=NCF1 PE=2 SV=1
A1X283	SH3 and PX domain-containing protein 2B OS=Homo sapiens OX=9606 GN=SH3PXD2B PE=1 SV=3
Q1LYG0	SH3 and PX domain-containing protein 2A OS=Danio rerio OX=7955 GN=sh3pxd2a PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF07653	SH3_2	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452	Domain	SH3 domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR051228	Family	NADPH Oxidase and PX Domain-Containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15706	SH3 MULTIPLE DOMAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016176	Molecular Function	superoxide-generating NADPH oxidase activator activity	Interproscan
GO:0042554	Biological Process	superoxide anion generation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24032	SH3PXD2; SH3 and PX domain-containing protein 2	-	Membrane trafficking	ko04131	deepkoala