Gene detail

Detailed information of XP_065648750.1 in Hydra vulgaris

Genomic Location: NC_088922.1:22955974...22977630
NR annotation: XP_047128431.1, poly(U)-binding-splicing factor PUF60 isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065792678.1

gtttattaactattatcTCCGTAATTGGTTAAACGGGTTTTTGATTGTGCCTTTGATCACTTCCTCAATTTCTGTAAACGTAAAACATACGTGCATCTTTGTAATAGAGTTCAACGCGCTAAGTTAAAAGCTAAACTTTAGTAGTTAATGTTATATTTCAACTTATAAGCAAATGGTTATGGCTAATGATATAAACAACATTGAGACCGACAGTGTAGCTGTTGAGATGGGACAAGCATCAATAGGGGAGCCAAAAAAACGAAAAAGGCGAAATATGTTTGATGTAAAACCAGAAGACATCAAGGTGATTGGAATCCATTGAATtcagcaaattatttttaattgttgtgtTTGCTCccagattaaaaaatattttacaaactactaggtcctatttttaaaattgataggTTTGTGTCCTTTGTCAAAATGTTgacatttaaaactataaagCAGTAGAGCTTAGTAATTATTGCTattgtttttagtattataattaATGGAATATTGCGTAAGCTCGCCCAAAAACACATGTGGAAGATGAATGCTCAACTTTTGGATCTGTTTTAGTTATTTCACTTATAACTGTTTGGCACCTTTTttctaagtttaattttttttatcataatgttgttttgtttttctttgtgtGTCTTTTAAAAGATCATGCTGAAGTTTTAAACAGTGAGTGGTATCATGCTCCTATACCAaAGTTGGATTAGAAATTCAGCCTCCAGAAGGAATGGATCAGCCTAAAGATAATGGTTCTGGAGAATTACTTTTAGGACCAGGAAATGGTGGACTTCATCCACGATTTTCAGAAGCAAAAAAAGCTTTGCCAAAAATTATTCGTGCACAAGAAGAGATGCTAGCCCAAGCCAAGCGGTTTGCAATGGAACAGTCTGTACAACATgtGTTAGCCAAGCAAAAAGTTGTCCAACAGCAAGATGTGAGTGCAGTTCAAAGCTCTGCTCAAAGACAAAGAGCTCTAGCTCTCATGTGCaggacATACATAGGCAGCATAAACTTTCAGCTTAATGAAGAATCTGTCCGCGCTTCATTTCTACCATTTGGACCAATTAAAATGATAGATCTATCATGGGATTCTGCTACAATGAAGCACAAGGGATTTGCATTTGTGGAATATGAAATTCCTGAAGCAGCTCAACTTGCACTTGAACAAATGAACAATGTACTAATGGGTGGAAGaaatataaaggttggTAGGCCAAGTAATGTTCCCCAAGCTGCTCCGTGGATTGAGCAAATACTTCAAGAGGCCAGGCAGTATGCTCGCATATACGTTTCGTCTATACATCCTGATCTGTCTGAAAGTGATATAAAAAGTGTATTTGAAGCATTCGGAGAGATTTTATCTTGTAAACTTGCACCTGATCAACTTACAGGCAAGCACAAAGGTTATGGTTTCATTGAGTATGCAAATCAAAGCTCTGCTAATGATGCAATTGTTGCTATGAATTTGTTTGATCTTGGAGGACAATATATTCGTGTTGGAAGGGCTATAACACCTCCTGATCATGCACTTAAACAAGGGCCTCCACCTGCTGCTTCATTGCTTGCTGCAAATGTCATATCAGCTAGTATTCAAGGACAGGAAGCTGTTTCAGCTCATGGAGcaacCGCTTTGCATATGAATCCAGTAACACCTTCTTTGTCTCCAGATCCTTTTGGGTTGCCGCCTATACCACTACAGATTCCAGGTTTTTCTCCAACAGTATCTAATGGCTCTGTGTATAATATTCAGACAAGTAGTCAGGCTCAGGTATCTTATGGTCAAACAACACTAAGTTATGGTTTATCTACAATGCAGTCTCCTTTTTCTCAGCAACCAGTTTCTTATAGTCAATCTACTTCTAGTTTAAATAACACTTCATATCCGACGCCTGGTAATCAACCAGTTCCGGAGGAGCGTCTAACTAGTCGACAACAGCGCAAAAAACAAGAGCTTCTCGATCACAAACACGCCGGTGAACAAAATCTTGAACGAGAAGAAAAGTTAGAGATATCTGGAAAAGATGCAAGATACATGATGATGCAGAAATTGGCTCGCAGCGGCtcatctcCTGTCctcgttttaaaaaatatggtaaCAAGTGATGAAGTAGACGAGGAATTACAGACAGAAGTAACGGAAGAGTGTAGTCGCTTTGGCGATGTAGTTCGTGTTGTTATATACCAAGAGCGTCAAGGTGAAGAGGACAATGCTGAAGTTATCGTCAAAATATTTGTCGAGTTTTCGAAACATTCGGAAGCAGAATCAGCTCAATCGGCATTAAACGGTCGTTGGTTTGGAGGAAACTCGATTCAAGCTGATATTTACGACGAAGATAAATACAAATCTCAAGATTATACGggttaatttaacaaaaattcgTTTTAATTATGATGCTGTTGTTGCGTGAAATTCAATTTTACTCAGCggcatttaaagttatttttattgcaaatactttttgtacatatttttaataattattatatatatatacacattca

Protein

Uniprot

Uniprot term	Description
Q3UEB3	Poly(U)-binding-splicing factor PUF60 OS=Mus musculus OX=10090 GN=Puf60 PE=1 SV=2
Q9WV25	Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus OX=10116 GN=Puf60 PE=2 SV=2
Q5R469	Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii OX=9601 GN=PUF60 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR051974	Family	Poly(U)-binding-splicing regulator	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034211	Domain	PUF60, RNA recognition motif 2	Interproscan
IPR034209	Domain	PUF60, RNA recognition motif 1	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47330	POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000380	Biological Process	alternative mRNA splicing, via spliceosome	Interproscan
GO:0000381	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006376	Biological Process	mRNA splice site recognition	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12838	PUF60; poly(U)-binding-splicing factor PUF60	-	Spliceosome	ko03041	deepkoala