Detailed information of XP_065648963.1 in Hydra vulgaris

Genomic Location: NC_088922.1:28884242...29065900
NR annotation: XP_047128607.1, E3 ubiquitin-protein ligase listerin [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
E1C231E3 ubiquitin-protein ligase listerin OS=Gallus gallus OX=9031 GN=LTN1 PE=3 SV=1
O94822E3 ubiquitin-protein ligase listerin OS=Homo sapiens OX=9606 GN=LTN1 PE=1 SV=6
Q6A009E3 ubiquitin-protein ligase listerin OS=Mus musculus OX=10090 GN=Ltn1 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
----------

 InterPro
InterPro termTypeDescriptionSource
IPR039804DomainListerin, zinc finger, RING-typeInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR011016DomainZinc finger, RING-CH-typeInterproscan
IPR039795FamilyE3 ubiquitin-protein ligase listerinInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12389ZINC FINGER PROTEIN 294Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0043023Molecular Functionribosomal large subunit bindingInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0072344Biological Processrescue of stalled ribosomeInterproscan
GO:1990112Cellular ComponentRQC complexInterproscan
GO:1990116Biological Processribosome-associated ubiquitin-dependent protein catabolic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K22377LTN1; E3 ubiquitin-protein ligase listerinEC:2.3.2.27
Ubiquitin systemko04121deepkoala

TOP