Gene detail

Detailed information of XP_065649392.1 in Hydra vulgaris

Genomic Location: NC_088922.1:43491827...43529172
NR annotation: XP_047128917.1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC100210288

ATGAACTTATCATTTGACTGTTTTGCTTATAAAAAGAAACCATCAGTACTTTCCAATAGTGGCGTCCATAGTTTTGGTAATTTTAATGACAATGATGAGGAAAAGATGGAAAAGTCAGACCAAAAAAAGAGAAAATGCATTATAGAAAGTGAAAGTGATGAAGAAGAGAAAAAGCAATATAAGCGAAATAGAGTAGTTCTTTCTGACAGTGACGGCGATAAAGATAATCCAACAGACCTCTGTAAAGTCCAGTCACCTTTTAAGCATAAAGATGACATATTAAATTATGAAAGTAGCCACGATGAAAGTGATTTGGACTGTAATACAAATGATATAATAAGAAAACAGATGTTATTTGATTTTATAACTACATGTACACTAGAAGATCTTGTTCTTATTCCTGGATTTTCTTTAAAAAAAGCTGAAAAAGTTAAAGGCTTGCTTCCTTTTCATGACTATAATAATATGATTGAAAAACTTAATGAGTTGAGAGGTTTTTCAATAAACACGTTTTTAAGCGAATGTAGTAATCTTTTGGATGAACAAAAAAATTTTCAATCACTAATTGCACAATGTGAAGCAATGAGCAGACAAACTGAATCAGAGGTATTCTTACATTGCAACGATGTCACAAAGTTACCTATTCAAAAGCCTTCCTTAGTCAATGAAAAAGTCTCCTTGAAAAGCTATCAGTTAGTAGGATTAAATTGGTTGGTAATGCTGCATAGAAATAACTTAAATGGAATTCTTGCTGATCAGATGGGATTAGGGAAGACAGTTCAAACTTTAGCTTTTATAGGATATTTATTGGAAACTGGTCATAAAGGAACTACTTTGATTGTATGTCCATGCTCTACAATGGATAATTGGGTTCGTGAATTTGAAAAATGGCTGCCTAATGTATCGTTCACTCAATATACTGGTTCACAGAGTGAAAGAGCGCTAATACGACAACATATAAAAAATGACACTCAAGAAAGTTCTGTCATTATATCAACCATCAATCATGTACTGGGTACCAAGTATGATCGAAATTTTTTCAGGAGTATAAATTTACAATATTTAATTCTTGACGAAGCTCATATGATAAAAAACGTGAAAACAGAGCGTTTTAAACACTTAAGCAAGCTAAAGGCTCCTCGAAAGATTTTGTTGACTGGTACACCCTTTCAAAATGATGTTATTGAGCTGATCTCTTTGCTGACATTTTTAATGCCAAACCTTTTTGAAGAATTTTCAAGCAGTTTTTACAAAGAAAGATTAAAGTTTCTGTTTGCTTCTTGTTACAAAACTGGTGACAATATTGAAGATGACCATATTGGAAGACTGAAAAAAATTTTAAAACCTTTTGTTTTGCGCCGACTTAAACAAGATGTTTTAAAAGAAATGCCGAACAAAATTGATAGTACAGTTATTTGTGAGTTAACAGCTAGTCAAAAACAAATTTATTTATCTTTTGCAAAACGTTTTTCTGACAATACAACAGATCAAAAAATGGGTTTATCTCTTTTAATGTTGTTGCGTAAAACAACAAACCACCCACTGCTTGTAAGAGTCAAGTATAGTGATTCAAGTATTTTAAAGATGGCAGAAGATTATGTTTCTAGTCCTATGAACAATGAATGCGATAAGGATTTAGTTTATGAAGACATGTCAGTTATGTCTGACTTTGAGCTGCATAAACTTTGCAGCACGCAACCTATCCTAAAAAAATACAAATTATGTGATGATGATATACTGGATAGTGGAAAAATTAAACAACTGGACAAGCTTTTGCCAGAACTTAAAGAAAAAAATGATCGTGTATTGTTATTCAGTCAATTTGTAATTGTTCTTGACATTCTTGAAGAATATTTAAAGATACGAAAGATAAAATATTTGCGGTTAGATGGTAGCACTAAAGGAAATGAAAGACAAGAACTAATAGACAAGTTTAATCACAACGAAGAAATATTTATATTTTTACTCTCTACACGAGCTGGCGGACTGGGAATTAATTTAACTACAGCTAACACTGTTGTGCTCCACGATATTGACTTTAATCCTTACAACGATAAGCAAGCTGAAGATAGGTGTCATCGGCTTGGTCAAACTAGGCAAGTAACTGTGTATAAATTTATTGGCAAAGATACTGTCGAAGAAAATATTTTGACATGTGGTGAAAGAAAACTCCAGCTTGAAAAAGAGTTGGTCGGAAATACAGAAATCGATTTAGAAAGAGATTTGTCGGACGATGCATTTAACATCTTACGCGACAATATTAAAAAAATCGAAGCTCTGCAAAGAAATGCTGAGTCTAAACTTTAG

Transcript

rna-XM_065793320.1

atcAGTTGtagttttcaatttataaatatgaactaaaaaagaagtcatatttaactgattaaaaaaaaaacacttagtTTGCAAGAACATTAAAGTAGTTGTAATGAACTTATCATTTGACTGTTTTGCTTATAAAAAGAAACCATCAGTACTTTCCAATAGTGGCGTCCATAGTTTTGGTAATTTTAATGACAATGATGAGGAAAAGATGGAAAAGTCAGAccaaaaaaagagaaaatgcATTATAGAAAGTGAAAGTGATGAAGAAGAGAAAAAGCAATATAAGCGAAATAGAGTAGTTCTTTCTGACAGTGACGGCGATAAAGATAATCCAACAGACCTCTGTAAAGTCCAGTCACCTTTTAAGCATAAAGATGACATATTAAATTATGaAAGTAGCCACGATGAAAGTGATTTGGACTGTAATACAAATGATATAATAAGAAAACAGatgttatttgattttataactACATGTACACTAGAAGATCTTGTTCTTATTCCtggattttctttaaaaaaagctgaaaaagtTAAAGGCTTGCTTCCTTTTCATGACTATAATAATATGATTGAAAAACTTAATGAGTTGAGAGGTTTTTCAATAAACACGtttttaagcgaatgtagtaatcttttggatgaacaaaaaaattttcaatcacTAATTGCACAATGTGAAGCAATGAGCAGACAAACTGAATCAGAGgTATTCTTACATTGCAACGATGTCACAAAGTTACCTATTCAAAAGCCTTCCTTAGTCAatgaaaaagtcTCCTTGAAAAGCTATCAGTTAGTAGGATTAAATTGGTTGGTAATGCTGCATAGAAATAACTTAAATGGAATTCTTGCTGATCAGATGGGATTAGGGAAGACAGTTCAAACTTTAGCTTTTATAGGATATTTATTGGAAACTGGTCATAAAGGAACTACTTTGATTGTATGTCCATGCTCTACAATggataattggGTTCGTGAATTTGAAAAATGGCTGCCTAATGTATCGTTCACTCAATATACTGgttcACAGAGTGAAAGAGCGCTAATACgacaacatataaaaaatgacacTCAAGAAAGTTCTGTCATTATATCAACCATCAATCATGTACTGGGTACCAAGTATGATCGAAATTTTTTCAGGagtataaatttacaatatttaattctTGACGAAGCTCATATGATAAAAAACGTGAAAACAGAGCGTTTTAAACACTTAAGCAAGCTaaagGCTCCTCGAAAGATTTTGTTGACTGGTACACCCTTTCAAAATGATGTTATTGAGCTGATCTCTTTGCTGACATTTTTAATGCCAAACCTTTTTGAAGAATTTTCAAGCAGTTTTTACAAAGAAAGATTAAAGTTTCTGTTTGCTTCTTGTTACAAAACTGGTGACAATATTGAAGATGACCATATTGGaagactgaaaaaaattttaaaaccttttgtttTGCGCCGACTTAAACAAGATgttttaaaagaaatgccGAACAAAATTGATAGTACAGTTATTTGTGAGTTAACAGCtagtcaaaaacaaatttatttatcttttgcaaAACGTTTTTCTGACAATACAAcagatcaaaAAATGGGTTTATCTCTTTTAATGTTGTTGCGTAAAACAACAAACCACCCACTGCTTGTAAGAGTCAAGTATAGTGATTCAAGTATTTTAAAGATGGCAGAAGATTATGTTTCTagtCCTATGAACAATGAATGCGATAAGGATTTAGTTTATGAAGACATGTCAGTTATGTCTGACTTTGAGCTGCATAAACTTTGCAGCACGCAACCTAtcctaaaaaaatacaaattatgtGATGATGATATACTGGATAGTGGAAAAATTAAACAACTGGACAAGCTTTTGCCAGAacttaaagaaaaaAATGATCGTGTATTGTTATTCAGTCAATTTGTAATTGTTCTTGACATTCTTGAAGAATATTTAAAGATAcgaaagataaaatatttgcgGTTAGATGGTAGCACTAAAGGAAATGaaagacaaGAACTAATAGACAAGTTTAATCACAAcgaagaaatatttatatttttactctCTACACGAGCtgGCGGACTGGGAATTAATTTAACTACAGCTAACACTGTTGTGCTCCACGATATTGACTTTAATCCTTACAACGATAAGCAAGCTGAAGATAGGTGTCATCGGCTTGGTCAaactagGCAAGTAACTGTGTATAAATTTATTGGCAAAGATACTGtcgaagaaaatattttgacatgTGGTGAAAGAAAACTCCAGCTTGAAAAAGAGTTGGTCGGAAATACAGAAATCGATTTAGAAAGAGATTTGTCGGacgatgcatttaacatcttacgcgacaatattaaaaaaatcgaaGCTCTGCAAAGAAATGCTGAGTCTAAACTTTAGCTTTTTGACTCATCAAGTTTAGCTTTTTGGTTTATCAAGTTTAGGCGAGACAAATTAATTTGCAAGAAACCATCGGTTTTGAGTTTTACTGTTCAGATTTATATGTACTTAGGCATCTAATACATGTGCGCAAAACTTAGATAAAGATTAATGGAACCCATACCAGATTTAGACAAAGCATACTAAGAAACTgagtttgttcttttttttaaaaaatgtttaaaaaaaagttaaataaaaa

Protein

Uniprot

Uniprot term	Description
Q5FWR0	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Xenopus tropicalis OX=8364 GN=smarcad1 PE=2 SV=1
D3Z9Z9	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Rattus norvegicus OX=10116 GN=Smarcad1 PE=1 SV=1
E1B7X9	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Bos taurus OX=9913 GN=SMARCAD1 PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10799	SNF2/RAD54 HELICASE FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14439	SMARCAD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1	EC:5.6.2.-	Chromosome and associated proteins	ko03036	deepkoala